Affinage

TMCC3

Transmembrane and coiled-coil domain protein 3 · UniProt Q9ULS5

Length
477 aa
Mass
53.8 kDa
Annotated
2026-06-10
14 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge faithfulness: 5/6 claims corpus-supported (83%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TMCC3 is an endoplasmic reticulum transmembrane protein that shapes the tubular ER network by localizing specifically to ER tubule three-way junctions (PMID:31696206). It self-assembles into oligomers and is anchored in the ER through its transmembrane domains, while its N-terminal coiled-coil domain directs the protein to three-way junctions (PMID:27697108, PMID:31696206). TMCC3 binds atlastin GTPases through its C-terminal transmembrane segments, and TMCC3 loss reduces three-way junctions and expands ER sheets—a phenotype partially rescued by atlastin-2 overexpression, establishing that TMCC3 supports atlastin activity in promoting the reticular ER (PMID:31696206). Junction localization is negatively regulated by phosphorylation-dependent binding of 14-3-3γ to the TMCC3 N-terminus, which displaces TMCC3 from three-way junctions and remodels the ER network (PMID:36549645). Beyond ER morphogenesis, TMCC3 directly binds AKT via its N-terminal 1–153 residue domain and positively regulates AKT activation, and this interaction drives breast cancer stem cell self-renewal and metastasis (PMID:33742122). TMCC3 transcription is directly activated by PPARγ through a responsive element in its 5' region, accounting for elevated expression in fatty liver (PMID:39326649).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2016 Medium

    Establishing where TMCC3 resides and how it is organized was the first step in defining its cellular role, showing it is an ER-anchored protein that oligomerizes and engages 14-3-3 proteins.

    Evidence Deletion-mutant expression, confocal immunostaining, and immunoprecipitation/mass spectrometry of recombinant TMCC3

    PMID:27697108

    Open questions at the time
    • The functional consequence of oligomerization was not defined
    • The specific 14-3-3 isoform and the regulatory role of the interaction were not resolved
  2. 2019 High

    This work resolved the molecular function of TMCC3 in ER architecture, demonstrating that it concentrates at three-way junctions via its coiled-coil domain and supports atlastin-driven formation of the tubular ER network.

    Evidence Domain-truncation mapping, fluorescence microscopy, RNAi knockdown with defined ER-morphology phenotype, and atlastin-2 overexpression rescue in U2OS cells

    PMID:31696206

    Open questions at the time
    • The biochemical mechanism by which TMCC3 enhances atlastin GTPase activity was not determined
    • Whether junction targeting is dynamically regulated was not addressed
  3. 2021 High

    An unexpected signaling function was uncovered, showing TMCC3 directly binds and activates AKT to drive breast cancer stem cell self-renewal and metastasis—linking the ER protein to oncogenic signaling.

    Evidence Cell-free binding assay, reciprocal Co-IP with domain mapping, siRNA/overexpression, mammosphere and ALDH assays, and xenograft/metastasis models

    PMID:33742122

    Open questions at the time
    • How an ER membrane protein engages cytosolic AKT mechanistically was not resolved
    • Whether AKT activation is connected to TMCC3's ER junction role is unknown
  4. 2022 High

    The regulatory logic of TMCC3 junction localization was defined, showing phosphorylation-dependent 14-3-3γ binding to the N-terminus displaces TMCC3 from three-way junctions and remodels the ER network.

    Evidence Reciprocal Co-IP, serine-to-alanine site-directed mutagenesis, overexpression, and knockdown/rescue with ER-morphology readout

    PMID:36549645

    Open questions at the time
    • The kinase that phosphorylates the 14-3-3 binding motif was not identified
    • The physiological signal triggering 14-3-3γ-mediated remodeling was not defined
  5. 2024 Medium

    Transcriptional control of TMCC3 was established, identifying PPARγ as a direct activator of Tmcc3 isoforms and linking its upregulation to fatty liver.

    Evidence Reporter assays, EMSA, identification of exon-1 variants, and liver-specific PPARγ knockout in ob/ob mice

    PMID:39326649

    Open questions at the time
    • The functional role of elevated TMCC3 in hepatic lipid metabolism was not established
    • Whether the ER or AKT functions mediate the fatty-liver phenotype is unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TMCC3's distinct activities—ER three-way junction organization, atlastin support, and direct AKT activation—are mechanistically integrated within one protein remains unresolved.
  • No structural model connecting the coiled-coil, AKT-binding, and transmembrane regions
  • Whether ER architecture and AKT signaling functions are coupled is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2 GO:0060089 molecular transducer activity 1
Localization
GO:0005783 endoplasmic reticulum 2
Pathway
R-HSA-162582 Signal Transduction 1 R-HSA-1852241 Organelle biogenesis and maintenance 1

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 TMCC3 protein self-assembles into oligomers and localizes to the endoplasmic reticulum through its transmembrane domains. TMCC3 associates with 14-3-3 proteins as identified by immunoprecipitation and mass spectrometry. Recombinant protein expression with deletion mutants, immunostaining, confocal microscopy, immunoprecipitation, mass spectrometry BMB reports Medium 27697108
2019 TMCC3 localizes specifically at three-way junctions of the peripheral ER tubular network. Its N-terminal coiled-coil domain is required for three-way junction localization. TMCC3 binds to atlastins through its C-terminal transmembrane domains, but the coiled-coil domain is required for localization independently of atlastin binding. TMCC3 knockdown reduces the number of three-way junctions and expands ER sheets, diminishing the tubular ER network; this phenotype is partially rescued by atlastin-2 overexpression, indicating TMCC3 supports atlastin activity. Transfection of TEX28 family members in U2OS cells, fluorescence microscopy, domain truncation mutants, knockdown (RNAi), overexpression rescue experiments The Biochemical journal High 31696206
2021 TMCC3 directly interacts with AKT through its N-terminal 1–153 amino acid domain, as demonstrated by cell-free biochemical assay and co-immunoprecipitation with domain mapping. TMCC3 positively regulates AKT activation: TMCC3 silencing reduces AKT activation while overexpression enhances it. The AKT-interacting domain of TMCC3 is required for TMCC3-induced AKT activation, breast cancer stem cell self-renewal, and metastasis. Cell-free biochemical binding assay, co-immunoprecipitation, domain truncation/mapping, siRNA knockdown, overexpression, in vitro mammosphere and ALDH assays, in vivo xenograft and metastasis models Oncogene High 33742122
2022 14-3-3γ binds to the N-terminus of TMCC3 via deduced phospho-serine binding motifs and negatively regulates TMCC3 localization to ER three-way junctions. Overexpression of 14-3-3γ reduces TMCC3 at three-way junctions and decreases junction number. A TMCC3 serine-to-alanine mutant in the 14-3-3 binding motif shows reduced 14-3-3γ binding and is more resistant to 14-3-3γ-driven displacement from three-way junctions. The phosphorylation-dependent 14-3-3γ binding thus underlies remodeling of the reticular ER network. Co-immunoprecipitation, overexpression, site-directed mutagenesis (serine-to-alanine), fluorescence microscopy, TMCC3 knockdown rescue assays The Journal of biological chemistry High 36549645
2024 PPARγ directly and positively regulates Tmcc3 gene transcription through a PPARγ-responsive element in the 5'-region of Tmcc3-1b and -1c isoforms, as shown by reporter assays and EMSA. Liver-specific PPARγ knockout ameliorates elevated TMCC3-1B expression in ob/ob fatty liver mice. Reporter assay, electrophoretic mobility shift assay (EMSA), liver-specific knockout mouse model, identification of three Tmcc3 exon-1 variants Molecular and cellular endocrinology Medium 39326649

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2018 Proteomics Profiling of CLL Versus Healthy B-cells Identifies Putative Therapeutic Targets and a Subtype-independent Signature of Spliceosome Dysregulation. Molecular & cellular proteomics : MCP 51 29367434
2023 NamiRNA-enhancer network of miR-492 activates the NR2C1-TGF-β/Smad3 pathway to promote epithelial-mesenchymal transition of pancreatic cancer. Carcinogenesis 22 36591938
2006 Identification of novel genes regulated in the developing human ventral mesencephalon. Experimental neurology 20 16473350
2019 Identification of gene and microRNA changes in response to smoking in human airway epithelium by bioinformatics analyses. Medicine 16 31568004
2021 Transmembrane and coiled-coil domain family 3 (TMCC3) regulates breast cancer stem cell and AKT activation. Oncogene 13 33742122
2016 Expression and characterization of transmembrane and coiled-coil domain family 3. BMB reports 9 27697108
2019 TMCC3 localizes at the three-way junctions for the proper tubular network of the endoplasmic reticulum. The Biochemical journal 8 31696206
2022 The 14-3-3γ isoform binds to and regulates the localization of endoplasmic reticulum (ER) membrane protein TMCC3 for the reticular network of the ER. The Journal of biological chemistry 4 36549645
2024 Transmembrane and coiled-coil domain family 3 gene is a novel target of hepatic peroxisome proliferator-activated receptor γ in fatty liver disease. Molecular and cellular endocrinology 3 39326649
2025 TRP-related gene signatures predict survival and the immune microenvironment in rectal cancer: a comprehensive bioinformatics study. Frontiers in immunology 2 40963625
2023 Negative regulation of angiogenesis and the MAPK pathway may be a shared biological pathway between IS and epilepsy. PloS one 2 37792772
2025 Causal Effects of the Plasma Proteome on Vascular Dementia Risk: A Mendelian Randomization Study with Experimental Validation. Cellular and molecular neurobiology 1 40622612
2022 Silencing CAMK2D Promotes the Proliferation of Spermatogonia in the Testis of Experimental Varicocele Rats. Evidence-based complementary and alternative medicine : eCAM 1 35911132
2026 Integrating plasma proteomes with genome-wide association data for causal protein identification in hepatocellular carcinoma: A bidirectional Mendelian randomization study. Medicine 0 41578465

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