Affinage

TENT5A

Terminal nucleotidyltransferase 5A · UniProt Q96IP4

Length
442 aa
Mass
49.7 kDa
Annotated
2026-04-28
19 papers in source corpus 8 papers cited in narrative 8 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TENT5A is a non-canonical cytoplasmic poly(A) polymerase that stabilizes target mRNAs by extending their poly(A) tails, thereby controlling the expression of secreted and structural proteins critical for osteogenesis, myogenesis, erythroid differentiation, and immune responses to mRNA vaccines (PMID:33882302, PMID:35137485, PMID:32528962, PMID:40240603). It associates with the endoplasmic reticulum and preferentially polyadenylates mRNAs encoding ER-targeted proteins, including COL1A1, COL1A2, MYC, and myogenin, with its catalytic poly(A) polymerase activity (dependent on an intact PAP/OAS1 domain) being essential for these functions (PMID:33882302, PMID:40240603, PMID:41616089, PMID:35137485). TENT5A physically interacts with Smad1/Smad4 to positively regulate BMP signaling during embryonic development and with RPL35 to negatively regulate mTOR signaling via effects on ribosome biogenesis (PMID:30291163, PMID:39570560). Loss-of-function mutations in TENT5A cause bone fragility and skeletal hypomineralization due to collagen defects, as demonstrated in knockout mice and in patient-derived cells carrying a homozygous p.Ile324Met variant (PMID:33882302, PMID:41908159).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2018 Medium

    Before TENT5A's enzymatic function was characterized, its developmental role was unclear; co-immunoprecipitation in Xenopus showed that Fam46a physically interacts with Smad1/Smad4 and positively regulates BMP signaling, establishing TENT5A as a modulator of a major developmental signaling pathway.

    Evidence Co-immunoprecipitation and morpholino knockdown epistasis in Xenopus embryos

    PMID:30291163

    Open questions at the time
    • Interaction demonstrated only in Xenopus; mammalian confirmation of Smad binding is lacking
    • Whether the poly(A) polymerase activity is required for BMP pathway modulation is unknown
    • Downstream mRNA targets through which BMP signaling is affected are not identified
  2. 2020 Medium

    The biochemical identity of TENT5A as an active non-canonical poly(A) polymerase was confirmed by site-directed mutagenesis of catalytic residues, and its subcellular behavior—ER-associated in the cytosol, nucleocytoplasmic shuttling, cell-cycle-dependent proteasomal degradation—was defined, establishing it as a regulated, short-lived enzyme.

    Evidence Site-directed mutagenesis, subcellular fractionation, poly-ubiquitination assays, and overexpression in K562 erythroid cells

    PMID:32528962

    Open questions at the time
    • Single-lab study; independent confirmation of nucleocytoplasmic shuttling not yet available
    • Endogenous mRNA substrates were not identified in this system
    • Structural basis of catalytic activity not resolved
  3. 2021 High

    The key physiological question—what mRNAs does TENT5A polyadenylate and what happens without it—was answered by nanopore sequencing and a knockout mouse, revealing that TENT5A polyadenylates collagen and other secreted-protein mRNAs during osteoblast differentiation, and that its loss causes bone fragility and hypomineralization.

    Evidence Nanopore direct RNA sequencing, Tent5a knockout mouse phenotyping, in vitro osteoblast differentiation

    PMID:33882302

    Open questions at the time
    • Whether TENT5A directly binds its osteoblast mRNA substrates or requires cofactors for target selection is not established
    • Mechanism by which poly(A) tail extension increases mRNA stability in this context is not defined
  4. 2022 Medium

    Extending TENT5A's functional scope beyond bone, knockdown experiments showed it is required for myoblast proliferation, migration, and type I muscle fiber maturation, acting at least in part by maintaining myogenin mRNA levels.

    Evidence siRNA/shRNA knockdown in C2C12 myoblasts with proliferation, migration, apoptosis, and in vivo muscle fiber assays

    PMID:35137485

    Open questions at the time
    • Direct polyadenylation of myogenin mRNA by TENT5A was not demonstrated
    • Single-lab study without knockout validation
    • Contribution to muscle physiology in vivo in a genetic model is not tested
  5. 2024 Medium

    A non-polyadenylation interaction was uncovered: TENT5A binds RPL35 and negatively regulates the mTOR pathway through effects on ribosome biogenesis, while its own transcription is directly activated by EGR1, providing mechanistic context for its tumor-suppressive function in hepatocellular carcinoma.

    Evidence ChIP, dual-luciferase reporter, Co-IP/mass spectrometry, GST pull-down, and Gly122 mutagenesis

    PMID:39570560

    Open questions at the time
    • Whether ribosome biogenesis regulation requires TENT5A's poly(A) polymerase activity or represents a separate function is unknown
    • Single-lab study; RPL35 interaction not validated in non-cancer cell types
    • Mechanism linking RPL35 binding to mTOR suppression is not fully delineated
  6. 2025 High

    TENT5A's role was extended to innate immunity: it re-adenylates mRNA vaccine transcripts in macrophages (extending poly(A) tails up to ~200 nt), preferentially acting on ER-targeted mRNAs due to spatial proximity, and its loss reduces vaccine-induced antibody responses.

    Evidence Nanopore direct RNA sequencing of individual vaccine mRNA molecules, TENT5A knockout mouse immunization

    PMID:40240603

    Open questions at the time
    • Whether TENT5A re-adenylates endogenous innate immune mRNAs beyond vaccine transcripts is not established
    • Mechanism of TENT5A induction by mRNA vaccines is not defined
  7. 2026 Medium

    TENT5A was shown to directly bind MYC mRNA via its PAP/OAS1 domain and extend its poly(A) tail, stabilizing MYC to drive stemness and chemoresistance in osteosarcoma, revealing a pathological gain-of-function role.

    Evidence Biochemical binding assays, poly(A) tail measurements, orthotopic xenografts, patient-derived organoids, multi-omics

    PMID:41616089

    Open questions at the time
    • Whether MYC mRNA is a physiological target outside osteosarcoma is unknown
    • Selectivity mechanism for MYC mRNA binding versus other transcripts is not defined
  8. 2026 Medium

    Human genetic validation came from patient-derived fibroblasts carrying a homozygous TENT5A p.Ile324Met variant, which showed shortened poly(A) tails on COL1A1/COL1A2, reduced collagen expression, and impaired mineralization, confirming TENT5A's role in human bone disease.

    Evidence Nanopore direct RNA sequencing of poly(A) tails, RNA-seq, mineralization assays in patient-derived fibroblasts

    PMID:41908159

    Open questions at the time
    • Single patient/family; broader genotype-phenotype spectrum not established
    • Whether the Ile324Met variant affects catalytic activity, substrate binding, or protein stability is not determined

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis of TENT5A substrate selectivity—how it distinguishes among the hundreds of ER-proximal mRNAs—and whether its poly(A) polymerase and RPL35-mediated ribosome/mTOR functions are mechanistically separable remain unresolved.
  • No crystal or cryo-EM structure of TENT5A or TENT5A–RNA complex is available
  • RNA-binding specificity determinants beyond the PAP/OAS1 domain are not mapped
  • Relationship between poly(A) polymerase activity and RPL35/mTOR regulation is not dissected

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140098 catalytic activity, acting on RNA 5 GO:0003723 RNA binding 1
Localization
GO:0005783 endoplasmic reticulum 2 GO:0005634 nucleus 1 GO:0005829 cytosol 1
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-162582 Signal Transduction 2 R-HSA-168256 Immune System 1

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 TENT5A is a cytoplasmic poly(A) polymerase that is induced during osteoblast differentiation and polyadenylates mRNAs encoding Col1α1, Col1α2, and other secreted proteins involved in osteogenesis, increasing their expression. Tent5a knockout mice display bone fragility and skeletal hypomineralization resulting from quantitative and qualitative collagen defects. Direct RNA sequencing (nanopore), Tent5a knockout mouse model, in vitro osteoblast differentiation assays Cell reports High 33882302
2025 TENT5A poly(A) polymerase, induced by mRNA vaccines, re-adenylates therapeutic mRNA poly(A) tails (extending them up to 200 nt) in macrophages, stabilizing target mRNAs. Re-adenylation is preferentially observed for mRNAs encoding ER-targeted proteins due to spatial proximity to ER-resident TENT5A. TENT5A deficiency reduces specific immunoglobulin production after mRNA vaccination in mice. Nanopore direct RNA sequencing of individual vaccine mRNA molecules, TENT5A knockout mouse immunization experiments, macrophage cell models Nature High 40240603
2020 FAM46A (TENT5A) is a nucleocytoplasmic shuttle protein that is Tyr-phosphorylated only in the cytosol, where it associates closely with ER, while in the nucleus it localizes proximal to chromatin regions of active transcription. It is a cell cycle-dependent poly-ubiquitinated short-lived protein degraded by the proteasome. Its non-canonical poly(A) polymerase activity (confirmed by site-directed mutagenesis) is essential for enhanced hemin-induced hemoglobinization in K562 cells. Site-directed mutagenesis of catalytic residues, subcellular fractionation, immunofluorescence, poly-ubiquitination assays, overexpression in K562 cells Frontiers in cell and developmental biology Medium 32528962
2018 Xenopus Fam46a physically interacts with Smad1/Smad4 and positively regulates BMP signaling, which is required for pre-placodal ectoderm (PPE) formation. Fam46a knockdown induces eye formation abnormalities and body color defects, and reduces PPE gene expression while increasing neural crest formation. Co-immunoprecipitation (Smad1/Smad4 interaction), Fam46a knockdown (morpholino), in situ hybridization, epistasis in Xenopus embryos Development (Cambridge, England) Medium 30291163
2022 Tent5a knockdown in C2C12 myoblasts inhibits cell proliferation, migration, and maturation of type I muscle fibers both in vitro and in vivo, mechanistically by decreasing myogenin expression, indicating TENT5A maintains myogenin mRNA stability. Tent5a knockdown (siRNA/shRNA), CCK-8 proliferation assay, wound-healing assay, TUNEL apoptosis assay, immunofluorescence, qPCR, in vivo muscle fiber analysis Cell proliferation Medium 35137485
2024 TENT5A is transcriptionally activated by EGR1 (which directly binds the TENT5A promoter) and interacts with RPL35 (identified by Co-IP, GST pull-down, and MS), negatively regulating the mTOR pathway via ribosome biogenesis. The Gly122 residue is critical for TENT5A's tumor-suppressive function in hepatocellular carcinoma. Chromatin immunoprecipitation, dual-luciferase reporter assay, Co-IP combined with mass spectrometry, GST pull-down, site-directed mutagenesis (Gly122), gain/loss-of-function experiments Cellular oncology (Dordrecht, Netherlands) Medium 39570560
2026 TENT5A directly binds MYC mRNA via its PAP/OAS1 domain, extends its poly(A) tail, and stabilizes the transcript, thereby reinforcing MYC-driven stemness and chemoresistance in osteosarcoma. Pharmacologic inhibition of TENT5A disrupts MYC mRNA stabilization and shortens poly(A) tails. Biochemical binding assays, poly(A) tail length measurements, gain/loss-of-function assays, orthotopic xenografts, patient-derived organoids, multi-omics and single-cell transcriptomics Cancer research Medium 41616089
2026 Patient-derived fibroblasts with a homozygous TENT5A variant (p.Ile324Met) show significantly shortened poly(A) tails on COL1A1 and COL1A2 transcripts (detected by Nanopore direct RNA sequencing), reduced collagen mRNA expression, impaired mineralization, and selective downregulation of ECM and osteogenic genes, confirming TENT5A's role in stabilizing collagen mRNAs via polyadenylation in human osteoblasts. Nanopore direct RNA sequencing of poly(A) tails in patient-derived fibroblasts, RNA-seq, qPCR, matrix mineralization assays JBMR plus Medium 41908159

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2018 FAM46A mutations are responsible for autosomal recessive osteogenesis imperfecta. Journal of medical genetics 55 29358272
2021 Cytoplasmic polyadenylation by TENT5A is required for proper bone formation. Cell reports 38 33882302
2002 Identification and characterization of C6orf37, a novel candidate human retinal disease gene on chromosome 6q14. Biochemical and biophysical research communications 35 12054608
2007 Genetic analysis of FAM46A in Spanish families with autosomal recessive retinitis pigmentosa: characterisation of novel VNTRs. Annals of human genetics 32 17803723
2016 Exome sequencing identifies a nonsense mutation in Fam46a associated with bone abnormalities in a new mouse model for skeletal dysplasia. Mammalian genome : official journal of the International Mammalian Genome Society 31 26803617
2015 Association of the FAM46A gene VNTRs and BAG6 rs3117582 SNP with non small cell lung cancer (NSCLC) in Croatian and Norwegian populations. PloS one 24 25884493
2025 Re-adenylation by TENT5A enhances efficacy of SARS-CoV-2 mRNA vaccines. Nature 20 40240603
2018 Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus. Development (Cambridge, England) 20 30291163
2014 Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6. Journal of orthopaedic research : official publication of the Orthopaedic Research Society 20 25231575
2022 Tent5a modulates muscle fiber formation in adolescent idiopathic scoliosis via maintenance of myogenin expression. Cell proliferation 17 35137485
2014 Association of variable number of tandem repeats in the coding region of the FAM46A gene, FAM46A rs11040 SNP and BAG6 rs3117582 SNP with susceptibility to tuberculosis. PloS one 15 24625963
2009 Family-with-sequence-similarity-46, member A (Fam46a) gene is expressed in developing tooth buds. Archives of oral biology 14 19740458
2006 Identification of a novel VNTR polymorphism in C6orf37 and its association with colorectal cancer risk in Chinese population. Clinica chimica acta; international journal of clinical chemistry 10 16545789
2020 Overexpression of FAM46A, a Non-canonical Poly(A) Polymerase, Promotes Hemin-Induced Hemoglobinization in K562 Cells. Frontiers in cell and developmental biology 8 32528962
2024 TENT5A mediates the cancer-inhibiting effects of EGR1 by suppressing the protein stability of RPL35 in hepatocellular carcinoma. Cellular oncology (Dordrecht, Netherlands) 3 39570560
2025 TENT5A Increases Glioma Malignancy and Promotes its Progression. Recent patents on anti-cancer drug discovery 2 38204269
2023 A Genetic Variant of FAM46A is Associated With the Development of Adolescent Idiopathic Scoliosis in the Chinese Population. Spine 2 37141460
2026 TENT5A Maintains MYC mRNA Stability to Enhance Osteosarcoma Stemness. Cancer research 0 41616089
2026 Impaired bone matrix turnover with selective small bone fragility in a child with TENT5A-associated osteogenesis imperfecta. JBMR plus 0 41908159