Affinage

TBC1D22A

TBC1 domain family member 22A · UniProt Q8WUA7

Length
517 aa
Mass
59.1 kDa
Annotated
2026-06-10
17 papers in source corpus 2 papers cited in narrative 3 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TBC1D22A is a putative Rab33 GTPase-activating protein (RabGAP), annotated by virtue of its TBC domain, that functions at the Golgi through interaction with the scaffolding protein ACBD3 (GCP60) (PMID:23572552). It binds ACBD3 at the same site used by the lipid kinase PI4KB, and these interactions are mutually exclusive, positioning TBC1D22A as a competitive regulator of PI4KB recruitment to the Golgi (PMID:23572552). This competition is differentially modulated by viral 3A replication proteins, with enteroviral and kobuviral 3A proteins distinctly affecting TBC1D22A displacement from ACBD3, implicating it in the membrane remodeling co-opted during picornaviral replication (PMID:23572552). Unlike its paralog TBC1D22B, which inhibits ER-to-Golgi transport in a GAP-dependent manner, TBC1D22A does not share this trafficking-inhibitory activity, indicating functional divergence between the paralogs (PMID:40878439). Beyond these ACBD3-centered and paralog-comparison findings, the catalytic GAP activity of TBC1D22A on Rab substrates and its broader cellular roles have not been directly characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2013 Medium

    Establishing what TBC1D22A physically associates with answered whether it operates at the Golgi: it was identified as an ACBD3-interacting factor that competes with PI4KB for the same binding site, defining a competitive recruitment mechanism.

    Evidence Affinity purification-mass spectrometry, fine-scale domain mapping, and competition pulldown in mammalian cells

    PMID:23572552

    Open questions at the time
    • Functional consequence of PI4KB displacement on Golgi PI4P levels not demonstrated
    • Direct binding shown by AP-MS/pulldown but not by reconstitution with purified components
    • Rab GAP substrate not identified
  2. 2013 Medium

    Characterizing how the ACBD3 interaction is regulated answered whether viral factors hijack it: enteroviral versus kobuviral 3A proteins differentially displace TBC1D22A, linking the competition to virus-specific Golgi remodeling.

    Evidence Mammalian two-hybrid assay and affinity purification with viral 3A proteins

    PMID:23572552

    Open questions at the time
    • RabGAP activity remains an annotation based on the TBC domain, not enzymatically demonstrated
    • Physiological role of TBC1D22A in uninfected cells not established
    • Whether displacement alters viral replication outcomes not tested directly
  3. 2025 Medium

    Comparing the paralogs answered whether TBC1D22A regulates secretory trafficking like TBC1D22B: it does not inhibit ER-to-Golgi transport, revealing functional divergence despite shared domain architecture.

    Evidence RUSH trafficking assay with overexpression of TBC1D22A versus TBC1D22B

    PMID:40878439

    Open questions at the time
    • Negative result for TBC1D22A does not define its actual trafficking substrate or pathway
    • Whether endogenous TBC1D22A has any GAP-dependent transport role untested
    • Single-lab overexpression assay; loss-of-function consequences unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct catalytic substrate and cellular function of TBC1D22A remain undefined: whether it acts as a bona fide Rab33 GAP and what process its ACBD3 competition with PI4KB ultimately controls is unresolved.
  • No enzymatic demonstration of GAP activity on any Rab
  • No loss-of-function phenotype reported
  • No structural model of the TBC1D22A-ACBD3 interface

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 1
Localization
GO:0005794 Golgi apparatus 2
Partners

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 TBC1D22A and TBC1D22B were identified as ACBD3 (GCP60)-interacting factors by affinity purification-mass spectrometry. Fine-scale mapping revealed that the binding domains on ACBD3 for TBC1D22A/B and PI4KB are identical, and affinity purification confirmed that PI4KB and TBC1D22A/B interactions with ACBD3 are mutually exclusive, suggesting a competitive regulatory mechanism for PI4KB recruitment to the Golgi. Affinity purification-mass spectrometry, fine-scale domain mapping, affinity purification competition assay mBio Medium 23572552
2013 TBC1D22A is annotated as a putative Rab33 GTPase-activating protein (RabGAP) based on its TBC domain, and its competition with PI4KB for ACBD3 binding is differentially affected by enteroviral versus kobuviral 3A replication proteins, indicating that distinct viral mechanisms modulate TBC1D22A displacement from ACBD3. Mammalian two-hybrid assay, affinity purification mBio Medium 23572552
2025 In functional assays using the Retention Using Selective Hooks (RUSH) system, TBC1D22B (the paralog) inhibited ER-to-Golgi transport in a GAP-dependent manner, and this effect was NOT replicated by its paralog TBC1D22A, indicating TBC1D22A does not share this specific trafficking function with TBC1D22B. RUSH trafficking assay, overexpression of TBC1D22A vs TBC1D22B Advanced science (Weinheim, Baden-Wurttemberg, Germany) Medium 40878439

Source papers

Stage 0 corpus · 17 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Gene deletions and amplifications in human hepatocellular carcinomas: correlation with hepatocyte growth regulation. The American journal of pathology 66 22326833
2013 ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. mBio 57 23572552
2018 DNA methylation analyses of the candidate genes identified by a methylome-wide association study revealed common epigenetic alterations in schizophrenia and bipolar disorder. Psychiatry and clinical neurosciences 26 29430824
2021 New insights into genetics underlying of plumage color. Animal genetics 19 34855995
2022 A functional genomics approach in Tanzanian population identifies distinct genetic regulators of cytokine production compared to European population. American journal of human genetics 15 35167808
2021 Genetic and metabolic profiling of individuals with Phelan-McDermid syndrome presenting with seizures. Clinical genetics 15 34664257
2018 Four-Generation Pedigree of Monozygotic Female Twins Reveals Genetic Factors in Twinning Process by Whole-Genome Sequencing. Twin research and human genetics : the official journal of the International Society for Twin Studies 12 30064533
2013 A new locus on chromosome 22q13.31 linked to recessive genetic epilepsy with febrile seizures plus (GEFS+) in a Tunisian consanguineous family. BMC genetics 11 24067191
2013 Genome-wide linkage and regional association study of obesity-related phenotypes: the GenSalt study. Obesity (Silver Spring, Md.) 10 23526746
2025 Genotype-Phenotype Associations in Phelan-McDermid Syndrome: Insights into Novel Genes Beyond SHANK3. International journal of molecular sciences 4 40429797
2025 TBC1D22B Regulates ER-to-Golgi Trafficking via RAB1B Inactivation and Promotes Oncogenic Programs in Breast Cancer. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 3 40878439
2025 Analysis of epigenetic biomarkers for diagnosis and assessment of severity in rheumatoid arthritis: a cross-sectional study. Arthritis research & therapy 2 40781639
2011 HIV associated dementia and HIV encephalitis II: Genes on chromosome 22 expressed in individually microdissected Globus pallidus neurons (Preliminary analysis). Bioinformation 2 21738310
2024 Network Pharmacology Approaches Used to Identify Therapeutic Molecules for Chronic Venous Disease Based on Potential miRNA Biomarkers. Journal of xenobiotics 1 39449424
2026 Interactive effects of telomere length and genetic variants on Alzheimer disease risk across multiple ancestral populations. Alzheimer's research & therapy 0 41857676
2026 Chromosome 22q13 terminal deletion size is associated with relevant clinical features in a sample of 63 Italian patients with Phelan-McDermid syndrome. Journal of neurodevelopmental disorders 0 42192297
2025 Interactive Effects of Telomere Length and Genetic Variants on Alzheimer Disease Risk Across Multiple Ancestral Populations. medRxiv : the preprint server for health sciences 0 41445639

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