Affinage

SRPRB

Signal recognition particle receptor subunit beta · UniProt Q9Y5M8

Length
271 aa
Mass
29.7 kDa
Annotated
2026-06-10
41 papers in source corpus 13 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SRPRB (SR beta) is the integral ER membrane GTPase subunit of the heterodimeric signal recognition particle (SRP) receptor, which mediates cotranslational targeting of secretory and membrane proteins to the ER (PMID:3021779, PMID:8247130, PMID:8299417). SRPRB anchors the peripherally associated SR alpha subunit to the ER membrane through a tight interaction with the amino-terminal membrane-binding domain of SR alpha, and is required for SR alpha membrane assembly and protein stability (PMID:7844142, PMID:7797564, PMID:37643813). As a member of the GTPase superfamily, SRPRB binds GTP specifically, and together with SR alpha stimulates GTP binding and hydrolysis by SRP54 in a three-GTPase cascade that drives protein targeting (PMID:8247130, PMID:8299417, PMID:7844142). A 1.7 Å crystal structure of SRPRB-GTP bound to the SR alpha interaction domain showed that the binding interface overlaps the switch 1 region, establishing eukaryotic SR as a conditional heterodimer whose dimerization is governed by the SRPRB GTP/GDP switch cycle (PMID:12654246). Beyond targeting, the GTP-binding activity of SRPRB is required to recruit the oligosaccharyltransferase (OST) complex and assemble an N-glycosylation-competent translocon, coordinating ER translation with N-glycosylation (PMID:36921042). In the heart, cardiac-specific overexpression of Srprb exacerbates ventricular remodeling and arrhythmia by activating ER stress and TLR4/CaMKII/NF-κB signaling (PMID:41568549).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 1986 High

    Established that the SRP receptor is not a single protein but a tight, stoichiometric heterodimer, defining SR beta/SRPRB as an obligate partner of SR alpha at the ER membrane.

    Evidence SRP-Sepharose affinity chromatography, reciprocal immunoprecipitation, and sucrose gradient fractionation of liver microsomes

    PMID:3021779

    Open questions at the time
    • Did not define which subunit carries enzymatic/GTPase activity
    • Membrane topology of each subunit unresolved
  2. 1993 High

    Identified SR beta as a GTP-binding protein and placed it within a three-GTPase cascade, answering how the receptor regulates SRP54 during targeting.

    Evidence In vitro GTP-binding and GTPase assays with purified SRP and SRP receptor components

    PMID:8247130 PMID:8299417

    Open questions at the time
    • Structural basis of GTP-dependent regulation not resolved
    • Order and kinetics of the GTPase switches not fully defined
  3. 1995 High

    Resolved the membrane architecture of the receptor by cloning SR beta as an integral transmembrane GTPase that anchors the peripheral SR alpha, defining the basis of receptor assembly.

    Evidence cDNA cloning and domain analysis, UV cross-linking GTP-binding assay, proteolytic protection topology, and biochemical fractionation; deletion mutagenesis localizing the SR alpha membrane-binding domain

    PMID:7797564 PMID:7844142

    Open questions at the time
    • Atomic-level interface between SR alpha and SR beta not yet defined
    • Regulatory role of the GTP/GDP cycle in dimerization not established
  4. 2003 High

    Provided the structural mechanism for receptor dimerization, showing SR is a conditional heterodimer controlled by the SR beta nucleotide state.

    Evidence 1.7 Å X-ray crystal structure of SR beta-GTP bound to the SR alpha interaction domain with supporting biochemical binding assays

    PMID:12654246

    Open questions at the time
    • Did not capture the full assembled receptor with membrane context
    • GDP-bound and apo states not structurally compared in same study
  5. 2023 High

    Extended SRPRB function beyond targeting by showing its GTP-binding activity recruits the OST complex to build an N-glycosylation-competent translocon.

    Evidence Guanine analog chemical probes, GTP-binding site mutagenesis, co-IP of SR beta with OST complex, N-glycosylation assays, and CRISPR/Cas9 knockout cells

    PMID:36921042

    Open questions at the time
    • Direct physical contacts between SRPRB and specific OST subunits not mapped
    • Whether OST recruitment is concurrent with or sequential to targeting unresolved
  6. 2023 High

    Defined SRPRB as a determinant of SR alpha protein stability and tested the requirement of the receptor for ER mRNA localization.

    Evidence CRISPR/Cas9 SRPRB knockout plus siRNA double-knockout, cell fractionation, and 4SU-seq deep sequencing of ER-associated mRNAs

    PMID:37643813

    Open questions at the time
    • Mechanism of SR alpha destabilization upon SRPRB loss not defined
    • Viability of double-knockout implies redundant targeting pathways not identified
  7. 2026 Medium

    Linked SRPRB dosage to cardiac pathology, showing overexpression drives arrhythmia and remodeling through ER stress and TLR4/CaMKII/NF-κB signaling.

    Evidence AAV cardiac-specific overexpression/knockdown in pressure-overload mice with echocardiography, ECG, in vivo electrophysiology, and pathway inhibitor experiments in primary cardiomyocytes and fibroblasts

    PMID:41568549

    Open questions at the time
    • How a canonical SRP receptor subunit engages TLR4/CaMKII/NF-κB is mechanistically unexplained
    • Whether the phenotype depends on SRPRB GTPase/targeting function not tested
  8. 2026 Low

    Associated SRPRB with cancer cell proliferation and migration phenotypes in TNBC, implicating WNT signaling.

    Evidence siRNA/shRNA knockdown with proliferation, migration, invasion, apoptosis assays and Western blot of WNT pathway proteins

    PMID:41875940

    Open questions at the time
    • WNT pathway link inferred from protein levels without epistasis or rescue
    • Single-lab knockdown without orthogonal validation or in vivo support

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unclear how the canonical ER-membrane SRP-receptor GTPase function of SRPRB mechanistically connects to its reported roles in cell proliferation, cardiac remodeling, and WNT/NF-κB signaling.
  • No experiments distinguish targeting-dependent from targeting-independent disease functions
  • Cytoplasmic localization reports conflict with established integral ER membrane topology
  • Direct effectors connecting SRPRB to NF-κB or WNT not identified

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003924 GTPase activity 3 GO:0060089 molecular transducer activity 2
Localization
GO:0005783 endoplasmic reticulum 3
Pathway
R-HSA-392499 Metabolism of proteins 3 R-HSA-9609507 Protein localization 2
Complex memberships
SRP receptor (SR alpha/SR beta heterodimer)

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1986 The SRP receptor is a heterodimer composed of a 69-kD alpha subunit (SR alpha) and a 30-kD beta subunit (SR beta/SRPRB). SR beta forms a tight complex with SR alpha in detergent solution, stable to high salt, and both subunits are present in the ER membrane in equimolar amounts and co-fractionate in constant stoichiometry. SRP-Sepharose affinity chromatography, immunoprecipitation with subunit-specific antibodies, sucrose gradient fractionation of rough and smooth liver microsomes The Journal of cell biology High 3021779
1993 SR beta (SRPRB) binds GTP specifically. The SR alpha/SR beta receptor complex stimulates GTP binding to and GTP hydrolysis by SRP54, proposing a cascade of three directly interacting GTPases (SRP54, SR alpha, SR beta) that regulates protein targeting to the ER. GTP binding and GTPase assays in vitro with purified SRP and SRP receptor components; GTP hydrolysis measurements Nature High 8247130 8299417
1995 SR beta (SRPRB) is an integral transmembrane protein and a member of the GTPase superfamily, distantly related to ARF and Sar1, that anchors SR alpha to the ER membrane. UV cross-linking confirmed SR beta binds GTP specifically. SR alpha is peripherally associated with the ER membrane and requires SR beta for membrane attachment. SR alpha is required for the interaction of SRP with the SR complex. Molecular cloning and cDNA sequencing of SR beta; UV cross-linking GTP-binding assay; proteolytic digestion experiments to determine membrane topology; biochemical fractionation The Journal of cell biology High 7844142
1995 The amino-terminal 140 residues of SR alpha constitute a membrane-binding domain that forms a protease-resistant folding unit and is the major site of tight binding with SR beta (SRPRB), indicating SR beta plays a role in the membrane assembly of SR alpha. SR alpha is not integrated into the ER membrane but is peripherally associated. Deletion mutagenesis of SR alpha, cell-free translation, microsome binding assays, alkaline carbonate extraction supplemented with 1 M NaSCN, proteolytic protection assay The Journal of biological chemistry High 7797564
1989 Assembly of SR alpha onto the ER membrane occurs via a two-step mechanism (targeting to ER, then anchoring on the cytoplasmic face) that is distinct from SRP-dependent targeting. Both anchoring and translocation activity could be reconstituted in vitro, demonstrating functional ER membrane assembly of SR alpha that restores translocation activity. Cell-free reconstitution assay for SR alpha membrane assembly; N-ethylmaleimide-inactivated ER microsomes used to assess anchoring and translocation activity independently The Journal of cell biology Medium 2537835
2003 Crystal structure of SR beta (SRPRB)-GTP in complex with the interaction domain of SR alpha at 1.7 Å resolution revealed that the binding interface overlaps largely with the switch 1 region of SR beta. Biochemical data showed that eukaryotic SR is a conditional (not obligate) heterodimer, and that the GTP/GDP switch cycle of SR beta functions as a regulatory switch for receptor dimerization. X-ray crystallography at 1.7 Å; supporting biochemical binding assays to test conditional heterodimer formation Cell High 12654246
2023 SR beta (SRPRB) is required for assembly of the N-glycosylation-competent translocon at the ER. Guanine analog chemical probes or mutation of the SR beta GTP-binding site caused an N-glycosylation-deficient phenotype without altering the SR alpha/SR beta association, but both approaches reduced the association of SR beta with the oligosaccharyltransferase (OST) complex, revealing a previously unrecognized function of SR beta in coordinating ER translation with N-glycosylation. High-throughput screening of guanine analog chemical probes; GTP-binding site mutagenesis; co-immunoprecipitation of SR beta with OST complex; N-glycosylation functional assays; CRISPR/Cas9 SRPRB knockout cell lines Science advances High 36921042
2023 CRISPR/Cas9-mediated knockout of SRPRB caused profound destabilization of SRA (SR alpha), demonstrating that SR beta is required for SR alpha protein stability. SR double-knockout (SRPRB KO + siRNA SRPRA) cells were viable and showed that steady-state mRNA localization to the ER is largely SR-independent. CRISPR/Cas9 SRPRB knockout; siRNA silencing; cell fractionation; deep sequencing of ER-associated and cytosolic mRNAs; 4-thiouridine pulse-labeling/4SU-seq RNA (New York, N.Y.) High 37643813
2006 Ectopic expression of APMCF1 (SRPRB) in HHCC hepatocellular carcinoma cells (which lack endogenous APMCF1) inhibited cell growth and induced G1 cell cycle arrest associated with up-regulation of p21 and down-regulation of TIMP3, as assessed by cell cycle gene chip analysis. Conversely, RNAi-mediated knockdown of APMCF1 in HepG2 cells promoted cell growth. Liposome-mediated transfection for overexpression; RNAi knockdown; cell cycle gene chip analysis; growth assays Molecular biology reports Low 17080297
2009 APMCF1 (SRPRB) protein is localized to the cytoplasm of COS-7 cells when expressed as an EGFP fusion protein. Transient transfection of pEGFP-APMCF1 fusion construct in COS-7 cells; fluorescence microscopy Journal of experimental & clinical cancer research : CR Low 19664239
2026 Cardiac-specific overexpression of Srprb in pressure-overload heart failure mice exacerbated ventricular remodeling, structural/electrical abnormalities, and ventricular arrhythmia incidence, while Srprb knockdown improved these parameters. Mechanistically, Srprb promoted arrhythmia vulnerability by activating endoplasmic reticulum stress and the TLR4/CaMKII/NF-κB signaling pathway. In vitro, Srprb modulation regulated angiotensin II-induced cardiomyocyte hypertrophy and TGF-β-induced fibroblast fibrosis. Adeno-associated virus-mediated cardiac-specific overexpression/knockdown in mice; aortic banding pressure-overload model; echocardiography; ECG; in vivo electrophysiology; adenovirus transfection of primary neonatal cardiomyocytes and fibroblasts; pathway inhibitor experiments; molecular and pathological analyses Journal of the American Heart Association Medium 41568549
2026 Knockdown of SRPRB in TNBC cell lines significantly inhibited proliferation, migration, and invasion, induced cell apoptosis, and suppressed the WNT signaling pathway as measured by expression of key WNT pathway regulatory proteins. siRNA/shRNA knockdown; CCK-8 and colony formation assays; Transwell and wound healing assays; flow cytometry; Hoechst staining; Western blot for WNT pathway proteins Gene Low 41875940

Source papers

Stage 0 corpus · 41 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1993 GTP binding and hydrolysis by the signal recognition particle during initiation of protein translocation. Nature 159 8247130
1986 The signal recognition particle receptor is a complex that contains two distinct polypeptide chains. The Journal of cell biology 156 3021779
1995 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. The Journal of cell biology 99 7844142
2003 Structural basis for the function of the beta subunit of the eukaryotic signal recognition particle receptor. Cell 80 12654246
1997 The NG domain of the prokaryotic signal recognition particle receptor, FtsY, is fully functional when fused to an unrelated integral membrane polypeptide. Proceedings of the National Academy of Sciences of the United States of America 69 9177162
1989 Evidence for a two-step mechanism involved in assembly of functional signal recognition particle receptor. The Journal of cell biology 62 2537835
2008 A cleavable N-terminal membrane anchor is involved in membrane binding of the Escherichia coli SRP receptor. Journal of molecular biology 49 18281057
1995 An amino-terminal domain containing hydrophobic and hydrophilic sequences binds the signal recognition particle receptor alpha subunit to the beta subunit on the endoplasmic reticulum membrane. The Journal of biological chemistry 44 7797564
2020 Aspirin modified strontium-doped β-tricalcium phosphate can accelerate the healing of femoral metaphyseal defects in ovariectomized rats. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 27 33125972
2004 Molecular hierarchy in neurons differentiated from mouse ES cells containing a single human chromosome 21. Biochemical and biophysical research communications 22 14733910
2020 Comprehensive Transcriptome Profiling of Dairy Goat Mammary Gland Identifies Genes and Networks Crucial for Lactation and Fatty Acid Metabolism. Frontiers in genetics 17 33101357
2010 Dyssynchronous systolic expansion of carotid artery in patients with marfan syndrome. Journal of the American Society of Echocardiography : official publication of the American Society of Echocardiography 15 20880668
2022 Monoamine oxidase A and organic cation transporter 3 coordinate intracellular β1AR signaling to calibrate cardiac contractile function. Basic research in cardiology 11 35842861
2006 Introduction of G1 phase arrest in Human Hepatocellular carcinoma cells (HHCC) by APMCF1 gene transfection through the down-regulation of TIMP3 and up-regulation of the CDK inhibitors p21. Molecular biology reports 11 17080297
2023 Accelerating bone regeneration in cranial defects using an injectable organic-inorganic composite hydrogel. Journal of materials chemistry. B 10 37066627
2003 Isolation of a novel member of small G protein superfamily and its expression in colon cancer. World journal of gastroenterology 10 12918107
1993 A GTPase cycle in initiation of protein translocation across the endoplasmic reticulum membrane. Ciba Foundation symposium 10 8299417
2023 Examining SRP pathway function in mRNA localization to the endoplasmic reticulum. RNA (New York, N.Y.) 9 37643813
2011 Proteomic analysis of amniotic fluid of pregnant rats with spina bifida aperta. Journal of proteomics 9 22108047
2019 iTRAQ-Based Quantitative Proteomics Analysis of HeLa Cells Infected With Chlamydia muridarum TC0668 Mutant and Wild-Type Strains. Frontiers in microbiology 8 31787950
2017 ICP-DRC-MS analysis of serum essential and toxic element levels in postmenopausal prediabetic women in relation to glycemic control markers. Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements (GMS) 8 28941826
2017 Local bone-marrow exposure: how to interpret the data on stable chromosome aberrations in circulating lymphocytes? (some comments on the use of FISH method for dose reconstruction for Techa riverside Residents). Radiation and environmental biophysics 7 28889186
2009 Subcellular localization of APMCF1 and its biological significance of expression pattern in normal and malignant human tissues. Journal of experimental & clinical cancer research : CR 6 19664239
2023 Immunogenic landscape and risk score prediction based on unfolded protein response (UPR)-related molecular subtypes in hepatocellular carcinoma. Frontiers in immunology 5 37457742
2023 Signal recognition particle receptor-β (SR-β) coordinates cotranslational N-glycosylation. Science advances 4 36921042
2022 An Unfolded Protein Response-Related mRNA Signature Predicting the Survival and Therapeutic Effect of Hepatocellular Carcinoma. Combinatorial chemistry & high throughput screening 4 35125080
2001 [Apoptosis-related genes cloned by improved subtractive hybridization]. Zhonghua zhong liu za zhi [Chinese journal of oncology] 3 11783083
2024 Selenomethionine Suppress the Progression of Poorly Differentiated Thyroid Cancer via LncRNA NONMMUT014201/miR-6963-5p/Srprb Pathway. Combinatorial chemistry & high throughput screening 2 38173060
2024 Exploring the ceRNA network involving AGAP2-AS1 as a novel biomarker for preeclampsia. Scientific reports 2 39521940
2021 CRISPR-Cas9 Editing of Human Histone Deubiquitinase Gene USP16 in Human Monocytic Leukemia Cell Line THP-1. Frontiers in cell and developmental biology 2 34136489
2017 Computational modeling of radiobiological effects in bone metastases for different radionuclides. International journal of radiation biology 2 28276897
2017 A single-nucleotide polymorphism in transferrin is associated with soluble transferrin receptor in Chinese adolescents. Asia Pacific journal of clinical nutrition 2 28917245
2025 Expression of the genes QPRT, RAB26, and SRPRB in cancer tissue from patients with triple-negative breast cancer as a biomarker for diagnosis, pharmacotherapy strategy, and survival: Evidence from bioinformatic database analysis. International journal of clinical pharmacology and therapeutics 1 40888212
2025 Physical activity and risk behaviors among adolescents: the mediating roles of diet, sleep, mental health, and substance use. Frontiers in public health 1 41112640
2025 Multi-omics analysis reveals shared diagnostic and therapeutic targets in endometriosis and recurrent implantation failure. Scientific reports 1 41462508
2017 Radiation resistant PIDECα cell using photon intermediate direct energy conversion and a 210Po source. Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine 1 29197822
2026 Signal Recognition Granule Receptor Beta Subunit Promotes Arrhythmogenic Remodeling in the Heart Failure Mice. Journal of the American Heart Association 0 41568549
2026 Influence of Sr2+ doping and phase composition on the physicochemical properties and cytocompatibility of biphasic calcium phosphate for bone graft applications. Biomedizinische Technik. Biomedical engineering 0 41762723
2026 Single-cell and multi-omics analysis identifies mitophagy-related biomarkers and therapeutic targets in ischemic stroke. Scientific reports 0 41792398
2026 SRPRB can regulate proliferation and migration in Triple-Negative breast cancer cells. Gene 0 41875940
2026 New proteomic signature in circulating extracellular vesicles from tumor-draining and peripheral veins of patients with lung adenocarcinoma. Cancer cell international 0 41923119

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