Affinage

SPATA33

Spermatogenesis-associated protein 33 · UniProt Q96N06

Length
139 aa
Mass
15.5 kDa
Annotated
2026-06-10
15 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/4 claims corpus-supported (75%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SPATA33 is a testis-enriched protein that organizes mitochondrial function and turnover in the male germline, acting as a molecular adaptor at the outer mitochondrial membrane (PMID:33087875, PMID:34446558). It tethers cargo to the autophagy machinery as a selective mitophagy receptor: its C-terminus binds the outer mitochondrial membrane protein VDAC2 while its N-terminus binds the autophagy component ATG16L1, and upon starvation SPATA33 is recruited to autophagosomes, with loss of SPATA33 inhibiting autophagy and overexpression promoting autophagosome formation and mitochondrial sequestration (PMID:33087875, PMID:33818286). Independently of its mitophagy role, SPATA33 docks the sperm-specific calcineurin (PPP3CC/PPP3R2) onto mitochondria through a PQIIIT/PxIxIT motif, and Spata33-null mice display an inflexible sperm midpiece and reduced motility that phenocopies calcineurin-subunit knockouts, establishing SPATA33 as required for sperm midpiece flexibility and male fertility (PMID:34446558). SPATA33 is predominantly expressed in testis, enriched in spermatogonia, spermatocytes, and round spermatids, with expression rising during the first wave of spermatogenesis (PMID:23844118).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2013 Medium

    Before any function was known, the question was where and when SPATA33 acts; expression and localization profiling placed it in the male germline during meiotic stages of spermatogenesis.

    Evidence RT-PCR, Western blot, IHC, and GFP-tagged localization in GC-1 and TM4 cells

    PMID:23844118

    Open questions at the time
    • No molecular function or binding partner identified
    • Nuclear/cytosolic distribution not reconciled with later mitochondrial localization
  2. 2020 High

    The central mechanistic question of what SPATA33 does molecularly was answered by identifying it as a mitophagy receptor that bridges mitochondrial cargo to the autophagosome via separable VDAC2- and ATG16L1-binding domains.

    Evidence Knockout and overexpression cell/mouse studies, reciprocal Co-IP, domain mapping, autophagy flux assays

    PMID:33087875

    Open questions at the time
    • Structural basis of dual cargo/machinery bridging not resolved
    • Trigger and regulation of receptor engagement beyond starvation unknown
  3. 2021 High

    A second axis emerged showing SPATA33 also recruits sperm calcineurin to mitochondria via a PxIxIT motif, linking the protein directly to sperm midpiece flexibility and motility.

    Evidence In silico PxIxIT screening, Spata33 knockout mice, sperm motility assays, IP, immunofluorescence

    PMID:34446558

    Open questions at the time
    • How the calcineurin-docking and mitophagy-receptor roles are coordinated in vivo is unclear
    • Downstream calcineurin substrates at the midpiece not defined
  4. 2021 Medium

    Follow-up work consolidated the receptor model by confirming that SPATA33 directly mediates the VDAC2-ATG16L1 interaction during germline mitophagy.

    Evidence Co-IP, domain interaction mapping, autophagy receptor functional assays (same-lab follow-up)

    PMID:33818286

    Open questions at the time
    • Single-lab corroboration without independent replication
    • No quantitative affinity or reconstitution of the bridged complex
  5. 2022 Medium

    A distinct cellular role was probed in Sertoli cells, where SPATA33 was found to bind CTNNA3 and modulate cell adhesion, migration, cell cycle, and F-actin organization.

    Evidence CRISPR-Cas9 knockout in TM4 cells, Co-IP, wound scratch assay, flow cytometry, phalloidin staining

    PMID:35536443

    Open questions at the time
    • Single lab, single study without reciprocal validation in vivo
    • Relationship between adhesion role and mitochondrial roles unestablished

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SPATA33's mitophagy-receptor function, calcineurin-docking function, and adhesion-modulating function are integrated within spermatogenesis remains unresolved.
  • No structural model of SPATA33
  • No reconciliation of distinct partner interactions into a unified mechanism
  • Human relevance and disease association not addressed

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3
Localization
GO:0005739 mitochondrion 2 GO:0005829 cytosol 1
Pathway
R-HSA-9612973 Autophagy 2 R-HSA-1474165 Reproduction 1

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 SPATA33 interacts with sperm calcineurin (PPP3CC/PPP3R2) via a PQIIIT sequence (PxIxIT consensus motif) and is required to localize calcineurin to the mitochondria in spermatozoa. Spata33 knockout mice exhibit reduced sperm motility due to an inflexible midpiece, phenocopying Ppp3cc and Ppp3r2 knockouts. Immunoprecipitation further showed that sperm calcineurin interacts with the outer mitochondrial membrane protein VDAC2, with SPATA33 bridging this interaction. In silico PxIxIT motif screening, gene knockout mouse generation, sperm motility assays, immunoprecipitation, immunofluorescence localization Proceedings of the National Academy of Sciences of the United States of America High 34446558
2020 SPATA33 functions as a mitophagy receptor in male germline cells. SPATA33 protein localizes to mitochondria via its C-terminal binding to the outer mitochondrial membrane protein VDAC2, and upon starvation is recruited to autophagosomes via its N-terminal binding to the autophagy machinery component ATG16L1. Spata33 knockout inhibited autophagy, while overexpression promoted autophagosome formation and mitochondrial sequestration, conferring cargo selectivity for mitochondrial degradation. Knockout mouse/cell studies, co-immunoprecipitation, subcellular fractionation/localization, overexpression assays, autophagy flux assays Cell death and differentiation High 33087875
2021 SPATA33 directly mediates the interaction between the outer mitochondrial membrane protein VDAC2 and the autophagy machinery component ATG16L1 during mitophagy, acting as a selective autophagy receptor that bridges cargo (mitochondria) to the autophagosome machinery in germline cells. Co-immunoprecipitation, domain interaction mapping, autophagy receptor functional assays Autophagy Medium 33818286
2013 SPATA33 (C16orf55) is predominantly expressed in mouse testis, enriched in spermatocytes, spermatogonia, and round spermatids. Expression is distributed in both nucleus and cytosol of germ cells. Expression increases during the first wave of spermatogenesis, indicating association with the meiotic process. RT-PCR, Western blot, immunohistochemistry, GFP-tagged subcellular localization in GC-1 and TM4 cells PloS one Medium 23844118
2022 SPATA33 interacts with CTNNA3 (alpha-catenin 3) via co-immunoprecipitation in TM4 Sertoli cells. This interaction inhibits formation of the CDH1-CTNNB1-CTNNA3 cell adhesion complex by competing with CTNNB1 for CTNNA3 binding. Spata33 knockout in TM4 cells impaired cell migration (wound scratch assay), decreased G1 phase cell fraction, and disrupted F-actin formation. CRISPR-Cas9 knockout in TM4 cells, co-immunoprecipitation, cell wound scratch assay, flow cytometry, phalloidin staining Cell and tissue research Medium 35536443

Source papers

Stage 0 corpus · 15 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2022 Genetic landscape of a large cohort of Primary Ovarian Insufficiency: New genes and pathways and implications for personalized medicine. EBioMedicine 69 36099812
2021 SPATA33 localizes calcineurin to the mitochondria and regulates sperm motility in mice. Proceedings of the National Academy of Sciences of the United States of America 43 34446558
2023 Tethering ATG16L1 or LC3 induces targeted autophagic degradation of protein aggregates and mitochondria. Autophagy 35 37424101
2020 SPATA33 is an autophagy mediator for cargo selectivity in germline mitophagy. Cell death and differentiation 33 33087875
2020 Functional annotation of melanoma risk loci identifies novel susceptibility genes. Carcinogenesis 25 31630191
2013 A novel testis-enriched gene Spata33 is expressed during spermatogenesis. PloS one 14 23844118
2023 DNA methylation patterns at birth predict health outcomes in young adults born very low birthweight. Clinical epigenetics 12 36959629
2022 Further Insights on RNA Expression and Sperm Motility. Genes 11 35886074
2021 SPATA33 functions as a mitophagy receptor in mammalian germline. Autophagy 10 33818286
2022 Sequencing of the ZMYND15 gene in a cohort of infertile Chinese men reveals novel mutations in patients with teratozoospermia. Journal of medical genetics 7 35973810
2022 Novel genetic associations with five aesthetic facial traits: A genome-wide association study in the Chinese population. Frontiers in genetics 4 36035146
2018 Gene alterations and expression spectrum of SPATA33 in nonobstructive azoospermic Iranian men. Molecular reproduction and development 4 30098056
2025 Deciphering the molecular clock: exploring molecular mechanisms and genetic influences on skin ageing. Biogerontology 2 40751759
2022 SPATA33 affects the formation of cell adhesion complex by interacting with CTNNA3 in TM4 cells. Cell and tissue research 2 35536443
2024 Divergent transcriptomic profiles in depressed individuals with hyper- and hypophagia implicating inflammatory status. Journal of psychiatric research 1 39316935

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