Affinage

SLC35E1

Solute carrier family 35 member E1 · UniProt Q96K37

Length
410 aa
Mass
44.8 kDa
Annotated
2026-06-10
5 papers in source corpus 1 papers cited in narrative 2 extracted findings
Cross-family judge faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SLC35E1 is an orphan transporter that participates in herpes simplex virus 1 (HSV-1) nuclear egress as a host factor required for efficient de-envelopment of perinuclear enveloped virions (PMID:35475666). It physically associates with the HSV-1 nuclear egress complex (NEC), binding the viral proteins UL34 and UL31 (PMID:35475666). Loss of SLC35E1 reduces HSV-1 replication and produces a de-envelopment defect characterized by aberrant membranous invaginations containing perinuclear enveloped virions, accumulation of virions in the perinuclear space, and mislocalization of the NEC (PMID:35475666). Beyond its role at the nuclear envelope during HSV-1 egress, no endogenous transport substrate or cellular function for SLC35E1 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2022 Medium

    Establishing that the orphan transporter SLC35E1 is a physical partner of the HSV-1 nuclear egress machinery linked this previously uncharacterized protein to a defined viral process.

    Evidence Tandem affinity purification coupled with mass spectrometry in HSV-1-infected cells, detecting interaction with NEC components UL34 and UL31

    PMID:35475666

    Open questions at the time
    • Interaction mapped by affinity-MS without reciprocal validation or defined binding interface
    • Whether the association is direct or bridged by other factors is unresolved
    • No structural model of the SLC35E1–NEC contact
  2. 2022 Medium

    Determining the functional consequence of SLC35E1 loss showed it is required for efficient de-envelopment, not merely a passive interactor of the NEC.

    Evidence CRISPR/Cas9 knockout with viral replication assays, emerin-based fluorescence reporter of NEC localization, and imaging of perinuclear virion accumulation

    PMID:35475666

    Open questions at the time
    • Mechanism by which SLC35E1 promotes de-envelopment is unknown
    • Whether transporter activity is required for the egress function was not tested
    • Single-lab finding without independent replication

Open questions

Synthesis pass · forward-looking unresolved questions
  • The endogenous transport substrate and the native (non-viral) cellular function of SLC35E1 remain undefined.
  • No transported molecule identified
  • No physiological role characterized outside HSV-1 infection
  • Subcellular localization in uninfected cells not established in the corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005215 transporter activity 2
Localization
GO:0005635 nuclear envelope 1
Partners

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 SLC35E1 (an orphan transporter) was identified as a cellular protein that physically interacts with the HSV-1 nuclear egress complex (NEC) components UL34 and UL31, as detected by tandem affinity purification coupled with mass spectrometry in HSV-1-infected cells. Tandem affinity purification coupled with mass spectrometry-based proteomics (interactome screen in HSV-1-infected cells) Journal of virology Medium 35475666
2022 CRISPR/Cas9 knockout of SLC35E1 reduced HSV-1 replication, induced aberrant membranous invaginations containing perinuclear enveloped virions adjacent to the nuclear membrane, caused accumulation of perinuclear enveloped virions in the perinuclear space, and caused mislocalization of the nuclear egress complex — phenotypes consistent with a defect in HSV-1 de-envelopment, establishing SLC35E1 as a cellular protein required for efficient HSV-1 de-envelopment during nuclear egress. CRISPR/Cas9 knockout combined with fluorescence microscopy (emerin mislocalization as reporter), viral replication assay, and electron/fluorescence imaging of perinuclear virion accumulation Journal of virology Medium 35475666

Source papers

Stage 0 corpus · 5 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 Microarray-based prediction of tumor response to neoadjuvant radiochemotherapy of patients with locally advanced rectal cancer. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 99 18166477
2019 Exome-Wide Rare Variant Analysis From the DiscovEHR Study Identifies Novel Candidate Predisposition Genes for Endometrial Cancer. Frontiers in oncology 18 31338326
2024 Recognizing SARS-CoV-2 infection of nasopharyngeal tissue at the single-cell level by machine learning method. Molecular immunology 12 39700903
2022 Role of the Orphan Transporter SLC35E1 in the Nuclear Egress of Herpes Simplex Virus 1. Journal of virology 5 35475666
2021 Identification of a Signature Comprising 5 Soluble Carrier Family Genes to Predict the Recurrence of Papillary Thyroid Carcinoma. Technology in cancer research & treatment 5 34590520

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