Affinage

SFI1

Protein SFI1 homolog · UniProt A8K8P3

Length
1242 aa
Mass
147.7 kDa
Annotated
2026-06-10
22 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SFI1 is a conserved centrin-binding scaffold that builds and partitions the cellular structures that organize spindle poles and centrioles, acting through arrays of internal tryptophan-anchored repeats that bind centrin (PMID:25031431, PMID:26779587). In budding yeast Sfi1 is an essential gene required for mitotic spindle assembly and G2-M progression (PMID:10455233), where it templates spindle pole body (SPB) duplication: its N-terminus, together with the first Cdc31 (centrin) binding sites, directly recruits the SPB components Spc29 and Spc42 to nucleate daughter SPB assembly at the distal end of the bridge (PMID:33523111), while its C-terminal region, anchored to the nuclear envelope by Kar1, governs bridge splitting and timely SPB separation (PMID:26076691, PMID:17392514). SPB duplication is licensed once per cycle by Cdk1 phosphorylation of Sfi1, which is opposed by Cdc14 dephosphorylation; phosphorylation of the N-terminus and of centrin (Cdc31 S15) is inhibitory and times daughter SPB biogenesis and array disassembly to the cell cycle (PMID:33523111, PMID:25340401, PMID:25736294). The structural Sfi1–centrin interaction is mediated by repeat tryptophans whose mutation mispartitions Sfi1 between daughter poles and abolishes assembly of the deficient pole (PMID:25031431), and is disrupted by CK2 phosphorylation of centrin (PMID:24918055). In human cells SFI1 localizes to the distal centriole lumen as part of a ring network with centrin-2, C2CD3, CEP135 and NA14 that scaffolds centriolar architecture [PMID:36125182, PMID:bio_10.1101_2025.06.17.660204]; there it is required not for centriole duplication itself but for distal Centrin recruitment, CEP164 distribution, CP110 removal and ciliogenesis (PMID:36125182), while during S phase it recruits the deubiquitylase USP9X to the centrosome to stabilize the duplication factor STIL (PMID:31197030). A divergent role is seen in the protist Spirostomum, where a reconstituted centrin–Sfi1 repeat complex undergoes calcium-dependent compaction underlying ATP-independent myoneme contractility (PMID:42213749).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 1999 Medium

    Established that SFI1 is an essential gene whose loss blocks mitosis, framing it as a core component of spindle/pole biogenesis rather than a dispensable factor.

    Evidence Conditional galactose-regulated yeast allele with nuclear staining and microscopy showing G2 arrest and absent spindle

    PMID:10455233

    Open questions at the time
    • Molecular function and binding partners undefined
    • No distinction between roles in duplication versus separation
  2. 2007 Medium

    Separated SFI1's duplication-initiation role from a distinct requirement in SPB bridge splitting, showing the C-terminal region governs separation of duplicated poles.

    Evidence mad1 synthetic-lethal genetic screen with C-terminal alleles plus light and electron microscopy showing unseparated duplicated SPBs

    PMID:17392514

    Open questions at the time
    • Molecular partner anchoring the C-terminus not identified
    • Regulation of the splitting step unknown
  3. 2014 High

    Defined the cell-cycle licensing logic of SPB duplication by showing Cdk1 phosphorylation of Sfi1 restricts duplication to once per cycle, opposed by Cdc14.

    Evidence Non-phosphorylatable phosphosite mutagenesis with yeast genetics and epistasis to Cdc14

    PMID:25340401

    Open questions at the time
    • Direct demonstration of Cdc14 dephosphorylating Sfi1 not shown
    • Which phosphosites control which step not fully resolved
  4. 2014 Medium

    Showed that conserved repeat tryptophans control equal partitioning of Sfi1 to daughter SPBs, linking repeat architecture to balanced pole inheritance.

    Evidence Live imaging and Trp-to-Arg mutagenesis (sfi1-M46) with light/electron microscopy in fission yeast

    PMID:25031431

    Open questions at the time
    • Mechanism of symmetric partitioning unresolved
    • Single-organism evidence
  5. 2014 Medium

    Identified CK2 phosphorylation of centrin as a switch that abolishes centrin–Sfi1 binding, revealing a second kinase input on the complex.

    Evidence In vitro CK2 kinase assay, ITC binding, and phosphomimetic centrin mutagenesis

    PMID:24918055

    Open questions at the time
    • In vivo relevance of CK2 regulation not established
    • Cellular context of phosphorylation unknown
  6. 2015 High

    Mapped how Sfi1 is anchored and stabilized within the SPB bridge, showing Kar1 tethers the Sfi1 C-terminus to the nuclear envelope to ensure timely SPB separation.

    Evidence PALM super-resolution localization, direct binding assays, and kar1Δ CDC31-16 suppressor genetics in budding yeast

    PMID:26076691

    Open questions at the time
    • No mammalian counterpart to Kar1 tethering established
    • Structure of the assembled bridge not resolved
  7. 2015 Medium

    Demonstrated that centrin phosphorylation regulates Sfi1–centrin array stability, with Cdc31 S15 phosphorylation driving Sfi1 dissociation at mitotic onset.

    Evidence Cdc31 phosphosite mutagenesis with fluorescence microscopy and cell-cycle analysis in fission yeast

    PMID:25736294

    Open questions at the time
    • Single method set from one lab
    • Kinase responsible in vivo not pinpointed
  8. 2016 Medium

    Defined the structural basis of the centrin–Sfi1 repeat interaction and showed human centrin lacks the centrin–centrin contacts seen in yeast Cdc31.

    Evidence Site-directed mutagenesis of Sfi1 repeat tryptophans and centrin residues with thermal denaturation/CD and complex purification

    PMID:26779587

    Open questions at the time
    • High-resolution structure of full complex not determined
    • In vitro stability not linked to in-cell function
  9. 2019 High

    Connected human SFI1 to centriole duplication through a recruitment axis, showing it brings USP9X to the centrosome to deubiquitylate and stabilize STIL.

    Evidence Reciprocal Co-IP, centrosome localization, in vitro deubiquitylation assay, and USP9X patient cell analysis with siRNA

    PMID:31197030

    Open questions at the time
    • Direct SFI1–USP9X interaction interface not mapped
    • Whether SFI1 itself is a USP9X substrate unclear
  10. 2022 High

    Placed human SFI1 at the distal centriole with a dedicated Centrin pool and showed its function is in centriolar architecture and ciliogenesis rather than duplication.

    Evidence Expansion microscopy, siRNA depletion, immunofluorescence, and functional ciliogenesis assays

    PMID:36125182

    Open questions at the time
    • How SFI1 controls CP110 removal and CEP164 distribution mechanistically unresolved
    • Relationship between distal pool and the USP9X/STIL role unclear
  11. 2025 Medium

    Embedded human SFI1 in a defined distal-centriole luminal ring network, clarifying its scaffolding partners and dependence on C2CD3.

    Evidence U-ExM, iterative U-ExM, cryo-electron tomography, siRNA depletion and Co-IP (preprint)

    PMID:bio_10.1101_2025.06.17.660204

    Open questions at the time
    • Preprint; SFI1-specific data limited within larger study
    • Stoichiometry and assembly order of the ring not defined
  12. 2026 Medium

    Revealed an actomyosin-independent contractile function for a centrin–Sfi1 complex, broadening the protein's mechanistic repertoire beyond pole/centriole scaffolding.

    Evidence Immunofluorescence, immunogold EM, and in vitro reconstitution with calcium-dependent compaction assay in Spirostomum

    PMID:42213749

    Open questions at the time
    • Relevance of contractile mechanism to mammalian SFI1 unknown
    • Structural basis of calcium-driven compaction not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the mammalian distal-centriole scaffolding role, the USP9X–STIL duplication axis, and the cell-cycle phospho-licensing logic established in yeast are integrated into a single regulatory model remains open.
  • No structure of the human luminal ring complex
  • Cdk1/Cdc14 licensing not demonstrated for mammalian SFI1
  • Mechanistic link between distal Centrin pool and ciliogenesis effectors unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 4 GO:0008092 cytoskeletal protein binding 3 GO:0060090 molecular adaptor activity 2
Localization
GO:0005815 microtubule organizing center 3 GO:0005635 nuclear envelope 1 GO:0005929 cilium 1
Pathway
R-HSA-1640170 Cell Cycle 3 R-HSA-1852241 Organelle biogenesis and maintenance 2
Complex memberships
centrin–Sfi1 complexdistal centriole luminal ring (C2CD3/SFI1/centrin-2/CEP135/NA14)spindle pole body half-bridge/bridge

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 Human SFI1 localizes to the distal end of centrioles where it associates with a pool of Centrin, as demonstrated by expansion microscopy. Both proteins are recruited early during procentriole assembly. Depletion of SFI1 results in loss of the distal Centrin pool without altering centriole duplication, but SFI1/Centrin complex is essential for centriolar architecture, CEP164 distribution, and CP110 removal during ciliogenesis. Expansion microscopy, siRNA depletion, immunofluorescence, functional ciliogenesis assays The EMBO journal High 36125182
2019 Mammalian SFI1 localizes to the centrosome during S phase and interacts with the deubiquitylase USP9X, recruiting it to the centrosome to deubiquitylate and stabilize STIL, a critical regulator of centriole duplication. Loss of USP9X results in reduced STIL levels, linking SFI1 to centriole duplication via a SFI1–USP9X–STIL axis. Co-immunoprecipitation, centrosome localization assays, deubiquitylation assay, patient cell analysis (USP9X loss-of-function), siRNA knockdown The Journal of cell biology High 31197030
2021 The N-terminus of budding yeast Sfi1 (N-Sfi1), including the first three Cdc31 binding sites, directly interacts with SPB components Spc29 and Spc42 to trigger daughter SPB assembly at the distal end of the bridge. Cdc31 binding to N-Sfi1 promotes Spc29 recruitment and is essential for satellite formation. Phosphorylation of N-Sfi1 has an inhibitory effect and delays daughter SPB biogenesis until G1. Binding assays, yeast genetics, fluorescence microscopy, phosphomutant analysis The Journal of cell biology High 33523111
2015 Kar1 directly binds the C-terminal region of budding yeast Sfi1 (Sfi1-CT) and anchors the SPB bridge to the nuclear envelope. PALM localization shows Kar1 resides in the bridge center. In kar1Δ cells (viable via CDC31-16), the bridge adopts an arched configuration, indicating Kar1 tethers Sfi1 to the nuclear envelope. Cdc31, Kar1, and Sfi1-CT together provide cross-links that stabilize the bridge and ensure timely SPB separation. Photo-activated localization microscopy (PALM), direct binding assays, yeast genetics (kar1Δ + CDC31-16 suppressor), binding free energy calculations The Journal of cell biology High 26076691
2014 Budding yeast Sfi1 is a substrate of Cdk1; phosphorylation of Sfi1 at Cdk1 consensus sites restricts SPB duplication to once per cell cycle. Mutating phosphorylation sites to non-phosphorylatable residues causes defects in SPB separation and inappropriate SPB reduplication during mitosis. The phosphatase Cdc14 has the converse role of activating SPB duplication licensing, likely via dephosphorylation of Sfi1. Phosphosite mutagenesis (non-phosphorylatable substitutions), yeast genetics, fluorescence microscopy, cell biology assays PLoS genetics High 25340401
2015 In fission yeast, Cdc31 (centrin) phosphorylation on serine 15 at a Cdk1 consensus site is required for dissociation of a significant pool of Sfi1 from the SPB bridge and timely segregation of SPBs at mitotic onset, demonstrating that the Cdc31 N-terminus modulates the stability of Sfi1–Cdc31 arrays. Phosphosite mutagenesis of Cdc31, fluorescence microscopy, cell cycle analysis in fission yeast Journal of cell science Medium 25736294
2014 In fission yeast, Sfi1 is gradually recruited to SPBs throughout the cell cycle rather than abruptly at duplication initiation. The conserved tryptophan residues in Sfi1 internal repeats are required for proper Sfi1 partitioning between daughter SPBs; a Trp-to-Arg mutant (sfi1-M46) causes preferential association of Sfi1 with one daughter SPB, resulting in failure of new SPB assembly in the SPB that receives insufficient Sfi1. Fluorescence microscopy (live imaging), tryptophan mutagenesis (Trp-to-Arg), light and electron microscopy Molecular biology of the cell Medium 25031431
2007 Novel C-terminal domain alleles of budding yeast Sfi1 reveal a role for the C-terminal region in SPB splitting/bridge separation. These sfi1 mutants have duplicated but unseparated SPBs (<0.3 µm apart), indicating Sfi1 is required for the step of bridge splitting following SPB duplication, distinct from its known role in duplication initiation. Genetic screen (mad1 synthetic lethal), light and electron microscopy, allele characterization Molecular biology of the cell Medium 17392514
1999 Yeast SFI1 is an essential gene required for cell cycle progression through G2-M transition. Conditional sfi1 mutants arrest as doublets with a single nucleus and no mitotic spindle, indicating SFI1 is required for mitotic spindle assembly. Conditional (galactose-regulated) allele, cell biology, nuclear staining, microscopy Yeast (Chichester, England) Medium 10455233
2014 CK2 phosphorylates human centrin 1 at T138 and human centrin 2 at T138 and S158. This phosphorylation abolishes centrin 1 binding to Sfi1 and reduces centrin 1 binding to XPC. For centrin 2, CK2 phosphorylation at T138 and S158 abolishes binding to SFI1 (as assessed by phosphomimetic T138D-S158D mutation). In vitro kinase assay (CK2 phosphorylation), isothermal titration calorimetry, phosphomimetic mutagenesis FEBS open bio Medium 24918055
2016 Mutagenesis of centrin residues and Sfi1 repeat tryptophans defines the structural basis of centrin–Sfi1 interaction: replacing W with F in Sfi1 repeats yields a functional repeat, while W-to-A mutations in adjacent repeats reduce complex thermal stability. Human centrin 1 variants (E105K, F113L) reduce complex stability with Sfi1, while A109T does not. Unlike yeast Cdc31, wild-type human centrin 1 does not display centrin–centrin interactions within Sfi1 complexes. Site-directed mutagenesis, thermal denaturation/CD spectroscopy, complex purification Biochimica et biophysica acta Medium 26779587
2025 C2CD3 depletion destabilizes the luminal ring network at the distal centriole composed of C2CD3/SFI1/centrin-2/CEP135/NA14, placing SFI1 within a defined architectural complex at the distal centriole lumen that scaffolds the distal end and contributes to appendage organization. Ultrastructure Expansion Microscopy (U-ExM), iterative U-ExM, cryo-electron tomography, siRNA depletion, Co-IP bioRxivpreprint Medium bio_10.1101_2025.06.17.660204
2026 Centrin and an Sfi1 homolog co-localize in the myoneme of Spirostomum by immunofluorescence and immunogold EM. A reconstituted Spirostomum centrin–Sfi1 repeat complex undergoes calcium-dependent compaction and self-association in vitro, supporting a molecular basis for myoneme contractility without actomyosin or ATP. Immunofluorescence, immunogold electron microscopy, in vitro reconstitution, calcium-dependent compaction assay Proceedings of the National Academy of Sciences of the United States of America Medium 42213749

Source papers

Stage 0 corpus · 22 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Regulation of spindle pole body assembly and cytokinesis by the centrin-binding protein Sfi1 in fission yeast. Molecular biology of the cell 33 25031431
2014 Licensing of yeast centrosome duplication requires phosphoregulation of sfi1. PLoS genetics 33 25340401
2022 Human SFI1 and Centrin form a complex critical for centriole architecture and ciliogenesis. The EMBO journal 27 36125182
2015 Cell cycle control of spindle pole body duplication and splitting by Sfi1 and Cdc31 in fission yeast. Journal of cell science 27 25736294
2007 Novel sfi1 alleles uncover additional functions for Sfi1p in bipolar spindle assembly and function. Molecular biology of the cell 26 17392514
2015 The insecticidal spider toxin SFI1 is a knottin peptide that blocks the pore of insect voltage-gated sodium channels via a large β-hairpin loop. The FEBS journal 22 25559770
2019 SFI1 promotes centriole duplication by recruiting USP9X to stabilize the microcephaly protein STIL. The Journal of cell biology 18 31197030
2015 Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope. The Journal of cell biology 17 26076691
2013 Sfr13, a member of a large family of asymmetrically localized Sfi1-repeat proteins, is important for basal body separation and stability in Tetrahymena thermophila. Journal of cell science 16 23426847
2014 CK2 phosphorylation of human centrins 1 and 2 regulates their binding to the DNA repair protein XPC, the centrosomal protein Sfi1 and the phototransduction protein transducin β. FEBS open bio 15 24918055
1999 Deletion of SFI1, a novel suppressor of partial Ras-cAMP pathway deficiency in the yeast Saccharomyces cerevisiae, causes G(2) arrest. Yeast (Chichester, England) 14 10455233
2022 Conformational Plasticity of Centrin 1 from Toxoplasma gondii in Binding to the Centrosomal Protein SFI1. Biomolecules 8 36009009
2021 The N-terminus of Sfi1 and yeast centrin Cdc31 provide the assembly site for a new spindle pole body. The Journal of cell biology 8 33523111
2016 New insights into the interaction of centrin with Sfi1. Biochimica et biophysica acta 8 26779587
2023 An Sfi1-like centrin-interacting centriolar plaque protein affects nuclear microtubule homeostasis. PLoS pathogens 7 37130129
2024 Fishnet mesh of centrin-Sfi1 drives ultrafast calcium-activated contraction of the giant cell Spirostomum ambiguum. bioRxiv : the preprint server for biology 4 39574644
2023 Long non-coding RNA in coronary artery disease: the role of PDXDC1-AS1 and SFI1-AS1. Functional & integrative genomics 4 37394483
2016 Sfr1, a Tetrahymena thermophila Sfi1 Repeat Protein, Modulates the Production of Cortical Row Basal Bodies. mSphere 4 27904881
2013 The E144 residue of Scherffelia dubia centrin discriminates between the DNA repair protein XPC and the centrosomal protein Sfi1. FEBS open bio 4 24371720
2025 Spatiotemporal control of cortical centrin patterning by regionalized Sfi1 family scaffolding proteins in Stentor coeruleus. bioRxiv : the preprint server for biology 2 40832266
2016 A chirality change in XPC- and Sfi1-derived peptides affects their affinity for centrin. Peptides 1 26923803
2026 A centrin-Sfi1 myoneme fishnet powers ultrafast calcium-triggered contraction in the giant ciliate Spirostomum ambiguum. Proceedings of the National Academy of Sciences of the United States of America 0 42213749

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