Affinage

RTKN

Rhotekin · UniProt Q9BST9

Length
563 aa
Mass
62.7 kDa
Annotated
2026-06-10
100 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RTKN (Rhotekin) functions as a growth-promoting effector that drives proliferation and suppresses apoptosis across multiple cell contexts, behaving as an oncogene in hepatocellular carcinoma where its overexpression promotes proliferation and blocks apoptosis while its silencing imposes G2/M arrest through NF-κB signaling (PMID:27922690). A recurrent theme is post-transcriptional repression of RTKN by microRNAs that bind its 3'UTR: miR-145 represses RTKN to limit breast cancer cell growth (PMID:19360360), let-7a downregulates RTKN to restrain colon cancer growth and metastasis, with RTKN re-expression rescuing this inhibition (PMID:27498032), and miR-152 targets the RTKN 3'UTR to reverse RTKN-driven HCC growth (PMID:27922690). In kidney ischemia-reperfusion injury, RTKN is de-repressed when the lncRNA MEG3 sequesters miR-145-5p, and the resulting RTKN upregulation activates Wnt/β-catenin signaling to promote mitophagy and apoptosis (PMID:33602903). Beyond these miRNA-regulated proliferative and survival roles, the direct molecular activity, structure, and physical effectors of RTKN have not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2009 Medium

    Establishing that RTKN is a direct target of a growth-suppressive microRNA connected its expression level to a proliferative phenotype.

    Evidence Luciferase 3'UTR reporter, siRNA knockdown, Western blot and RT-PCR in MCF-7 breast cancer cells

    PMID:19360360

    Open questions at the time
    • molecular activity of RTKN downstream of miR-145 not defined
    • no direct binding partners or effectors identified
    • single cell line and single lab
  2. 2016 Medium

    Gain- and loss-of-function defined RTKN as an oncogene acting through NF-κB and cell-cycle control, and identified a second repressive microRNA.

    Evidence Overexpression/knockdown in HepG2/Hep3B cells, flow cytometry for apoptosis and cell cycle, miR-152 3'UTR reporter assay

    PMID:27922690

    Open questions at the time
    • mechanism linking RTKN to NF-κB activation not resolved
    • no biochemical demonstration of how RTKN engages the pathway
  3. 2016 Medium

    A rescue experiment placed RTKN epistatically downstream of let-7a, showing RTKN is the functionally relevant target driving growth and metastasis.

    Evidence let-7a mimic transfection with RTKN re-introduction, growth and metastasis assays in HCT-116 and SW620 colon cancer cells

    PMID:27498032

    Open questions at the time
    • metastasis-promoting mechanism of RTKN not defined
    • downstream signaling in colon cancer not mapped
  4. 2021 Medium

    Embedding RTKN in a MEG3/miR-145-5p axis showed it activates Wnt/β-catenin signaling to drive mitophagy and apoptosis in a non-cancer injury context.

    Evidence RNA pulldown and reporter assays, siRNA knockdown, Wnt/β-catenin pathway readouts, in vivo kidney ischemia-reperfusion mouse model in HK-2 cells

    PMID:33602903

    Open questions at the time
    • direct mechanism by which RTKN activates Wnt/β-catenin not established
    • molecular link to mitophagy machinery unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • The intrinsic molecular activity of RTKN and its direct protein partners remain undefined in this corpus, leaving open how it transduces signals to NF-κB and Wnt/β-catenin.
  • no biochemical activity or direct binding partners characterized
  • no structural data
  • context-dependence (oncogenic vs injury-promoting) not mechanistically reconciled

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
No controlled-vocabulary terms were assigned to this entry.

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 RTKN is a direct target of miR-145: the miR-145 binding site was experimentally confirmed in the RTKN 3'UTR using reporter constructs, and overexpression of miR-145 reduced RTKN protein and mRNA levels in MCF-7 cells. siRNA-mediated knockdown of RTKN phenocopied miR-145 overexpression by inhibiting MCF-7 cell growth. Luciferase reporter assay (3'UTR), siRNA knockdown, Western blot, RT-PCR International journal of oncology Medium 19360360
2016 RTKN functions as an oncogene in hepatocellular carcinoma: overexpression promotes proliferation and inhibits apoptosis, while silencing has the opposite effect. The growth-promoting effect of RTKN operates through NF-κB signaling and G2/M phase arrest when inhibited. RTKN is a direct target of miR-152, which reverses RTKN-driven HCC cell growth. Overexpression and siRNA knockdown in HepG2/Hep3B cells, flow cytometry (apoptosis/cell cycle), luciferase reporter assay for miR-152 targeting of RTKN 3'UTR Oncology reports Medium 27922690
2016 RTKN is a direct target of let-7a in colon cancer: let-7a overexpression inhibits colon cancer cell growth and metastasis by directly downregulating RTKN, and re-introduction of RTKN into let-7a-overexpressing cells rescues the inhibitory phenotype. let-7a mimic transfection, RTKN rescue experiment, cell growth and metastasis assays in HCT-116 and SW620 cells Biochemical and biophysical research communications Medium 27498032
2021 RTKN acts downstream of miR-145-5p and upstream of the Wnt/β-catenin pathway in kidney ischemia-reperfusion injury: the lncRNA MEG3 sequesters miR-145-5p to upregulate RTKN, which in turn activates Wnt/β-catenin signaling and promotes mitophagy and apoptosis in HK-2 cells. c-MYC transcriptionally activates MEG3, forming a positive feedback loop. RNA pulldown/luciferase reporter for MEG3-miR-145-5p interaction; luciferase reporter and Western blot for miR-145-5p targeting of RTKN 3'UTR; siRNA knockdown of MEG3/RTKN; Wnt/β-catenin pathway readouts; in vivo IRI mouse model Cell death & disease Medium 33602903

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 Cytochrome b5 augments the 17,20-lyase activity of human P450c17 without direct electron transfer. The Journal of biological chemistry 447 9452426
1995 Coxsackieviruses B1, B3, and B5 use decay accelerating factor as a receptor for cell attachment. Journal of virology 230 7538177
1984 Biosynthesis and biological activity of leukotriene B5. Prostaglandins 175 6326200
1986 Synthesis, bacterial expression, and mutagenesis of the gene coding for mammalian cytochrome b5. Proceedings of the National Academy of Sciences of the United States of America 164 3540940
2009 miR-145 inhibits breast cancer cell growth through RTKN. International journal of oncology 145 19360360
2005 Regulation of 17,20 lyase activity by cytochrome b5 and by serine phosphorylation of P450c17. The Journal of biological chemistry 130 15687493
2008 Recessive congenital methaemoglobinaemia: cytochrome b(5) reductase deficiency. British journal of haematology 119 18318771
1985 Chemical characterization of protein-protein interactions between cytochrome P-450 and cytochrome b5. The Journal of biological chemistry 109 3920211
1985 Myoglobin: cytochrome b5 interactions and the kinetic mechanism of metmyoglobin reductase. The Journal of biological chemistry 105 4066692
1997 DT-diaphorase and cytochrome B5 reductase in human lung and breast tumours. British journal of cancer 103 9328153
2022 TaCol-B5 modifies spike architecture and enhances grain yield in wheat. Science (New York, N.Y.) 100 35389775
1977 Redox properties of microsomal reduced nicotinamide adenine dinucleotide-cytochrome b5 reductase and cytochrome b5. Biochemistry 88 19038
1997 Role of cytochrome b5 reductase on the antioxidant function of coenzyme Q in the plasma membrane. Molecular aspects of medicine 84 9266501
1994 The cytochrome b5-fold: an adaptable module. Biochimie 82 7893819
1997 Dissociation of heme from myoglobin and cytochrome b5: comparison of behavior in solution and the gas phase. Biochemistry 81 9033391
2013 Substrate-modulated cytochrome P450 17A1 and cytochrome b5 interactions revealed by NMR. The Journal of biological chemistry 80 23620596
2017 Cytochrome b5 Reductase 3 Modulates Soluble Guanylate Cyclase Redox State and cGMP Signaling. Circulation research 79 28584062
2004 Colocalization of P450c17 and cytochrome b5 in androgen-synthesizing tissues of the human. Biology of reproduction 79 14985252
1985 B5, a new B cell-restricted activation antigen. Journal of immunology (Baltimore, Md. : 1950) 79 2579134
2022 PI3K drives the de novo synthesis of coenzyme A from vitamin B5. Nature 78 35896750
2004 NADH cytochrome b5 reductase and cytochrome b5 catalyze the microsomal reduction of xenobiotic hydroxylamines and amidoximes in humans. The Journal of pharmacology and experimental therapeutics 77 15302896
1998 Superoxide, neuroleptics and the ubiquinone and cytochrome b5 reductases in brain and lymphocytes from normals and schizophrenic patients. Molecular psychiatry 74 9672898
2003 The role of cytochrome b5 fusion desaturases in the synthesis of polyunsaturated fatty acids. Prostaglandins, leukotrienes, and essential fatty acids 70 12538077
2021 c-MYC-induced long noncoding RNA MEG3 aggravates kidney ischemia-reperfusion injury through activating mitophagy by upregulation of RTKN to trigger the Wnt/β-catenin pathway. Cell death & disease 67 33602903
2008 Cytochrome b5, not superoxide anion radical, is a major reductant of indoleamine 2,3-dioxygenase in human cells. The Journal of biological chemistry 67 18299324
1977 Cytochrome b5 and cytochrome b5 reductase-phospholipid vesicles. Intervesicle protein transfer and oreintation factors in protein-protein interactions. The Journal of biological chemistry 66 885870
2012 Human cytochrome b5 reductase: structure, function, and potential applications. Critical reviews in biotechnology 65 23113554
2008 Metabolism of quetiapine by CYP3A4 and CYP3A5 in presence or absence of cytochrome B5. Drug metabolism and disposition: the biological fate of chemicals 54 19022943
1995 Molecular dynamics simulation of cytochrome b5: implications for protein-protein recognition. Biochemistry 53 7626638
1994 A splicing mutation in the cytochrome b5 gene from a patient with congenital methemoglobinemia and pseudohermaphrodism. Human genetics 53 8168836
2023 Vitamin B5 supports MYC oncogenic metabolism and tumor progression in breast cancer. Nature metabolism 52 37946084
2022 Cytochrome b5 reductases: Redox regulators of cell homeostasis. The Journal of biological chemistry 52 36441026
2014 Mitochondrial DNA haplogroup B5 confers genetic susceptibility to Alzheimer's disease in Han Chinese. Neurobiology of aging 52 25457022
1993 NADH-cytochrome b5 reductase and cytochrome b5 isoforms as models for the study of post-translational targeting to the endoplasmic reticulum. FEBS letters 52 8513896
2008 P450 reductase and cytochrome b5 interactions with cytochrome P450: effects on house fly CYP6A1 catalysis. Insect biochemistry and molecular biology 51 18930820
2007 Isolation and algae-lysing characteristics of the algicidal bacterium B5. Journal of environmental sciences (China) 51 18232228
2001 Probing the differences between rat liver outer mitochondrial membrane cytochrome b5 and microsomal cytochromes b5. Biochemistry 51 11583146
1983 Calorimetric and fluorescence characterization of interactions between cytochrome b5 and phosphatidylcholine bilayers. Biochemistry 50 6849876
1982 Purification and properties of soluble NADH-cytochrome b5 reductase of rabbit erythrocytes. Journal of biochemistry 50 7096301
2004 Organisation of the pantothenate (vitamin B5) biosynthesis pathway in higher plants. The Plant journal : for cell and molecular biology 49 14675432
1992 Expression of cytochrome b5 in yeast and characterization of mutants of the membrane-anchoring domain. The Journal of biological chemistry 48 1618763
2013 Evidence that cytochrome b5 and cytochrome b5 reductase can act as sole electron donors to the hepatic cytochrome P450 system. Molecular pharmacology 46 23530090
2003 Distinct roles of endoplasmic reticulum cytochrome b5 and fused cytochrome b5-like domain for rat Delta6-desaturase activity. Journal of lipid research 46 14563830
1995 Baculovirus expression of human P450 2E1 and cytochrome b5: spectral and catalytic properties and effect of b5 on the stoichiometry of P450 2E1-catalyzed reactions. Archives of biochemistry and biophysics 45 7893169
1995 A cytochrome-b5-containing fusion protein similar to plant acyl lipid desaturases. European journal of biochemistry 43 7588718
1984 Covalent cross-linking of the active sites of vesicle-bound cytochrome b5 and NADH-cytochrome b5 reductase. The Journal of biological chemistry 43 6699018
2006 Toxicity mediated by soluble oligomers of beta-amyloid(1-42) on cholinergic SN56.B5.G4 cells. Journal of neurochemistry 42 16945109
2013 The IL-33/ST2 pathway controls coxsackievirus B5-induced experimental pancreatitis. Journal of immunology (Baltimore, Md. : 1950) 41 23733876
2006 Interaction between vaccinia virus extracellular virus envelope A33 and B5 glycoproteins. Journal of virology 41 16912323
1999 Defining folding and unfolding reactions of apocytochrome b5 using equilibrium and kinetic fluorescence measurements. Biochemistry 40 10413531
1988 Two transcripts encode rat cytochrome b5 reductase. Proceedings of the National Academy of Sciences of the United States of America 40 3174630
1993 Thermodynamics of apocytochrome b5 unfolding. Protein science : a publication of the Protein Society 39 8401233
1980 Plasma membranes from intestinal microvilli and erythrocytes contain cytochromes b5 and P-420. Biochimica et biophysica acta 39 7407143
1989 Electrostatic and steric control of electron self-exchange in cytochromes c, c551, and b5. Biophysical journal 37 2550090
2016 NADH:Cytochrome b5 Reductase and Cytochrome b5 Can Act as Sole Electron Donors to Human Cytochrome P450 1A1-Mediated Oxidation and DNA Adduct Formation by Benzo[a]pyrene. Chemical research in toxicology 36 27404282
2014 Catalytically relevant electrostatic interactions of cytochrome P450c17 (CYP17A1) and cytochrome b5. The Journal of biological chemistry 36 25315771
1994 Recombinant human erythrocyte cytochrome b5. Biochemistry 36 7918357
2018 RETRACTED: Long non-coding RNA HULC interacts with miR-613 to regulate colon cancer growth and metastasis through targeting RTKN. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 35 30551459
1989 Phosphorylation of cytochrome P450: regulation by cytochrome b5. Archives of biochemistry and biophysics 34 2543294
2022 Vitamin B5 rewires Th17 cell metabolism via impeding PKM2 nuclear translocation. Cell reports 33 36450257
2016 Age-dependent Increases in Adrenal Cytochrome b5 and Serum 5-Androstenediol-3-sulfate. The Journal of clinical endocrinology and metabolism 33 27623070
2016 MicroRNA-152 inhibits tumor cell growth by directly targeting RTKN in hepatocellular carcinoma. Oncology reports 33 27922690
2010 Cytochrome b5 and NADH cytochrome b5 reductase: genotype-phenotype correlations for hydroxylamine reduction. Pharmacogenetics and genomics 33 19997042
2013 Serpin B5 is a CEA-interacting biomarker for colorectal cancer. International journal of cancer 32 24114705
2011 Cytochrome b₅ reductase-cytochrome b₅ as an active P450 redox enzyme system in Phanerochaete chrysosporium: atypical properties and in vivo evidence of electron transfer capability to CYP63A2. Archives of biochemistry and biophysics 32 21376009
2022 Immunostimulatory effects of vitamin B5 improve anticancer immunotherapy. Oncoimmunology 31 35096488
2009 Genetic diversity of msp3alpha and msp1_b5 markers of Plasmodium vivax in French Guiana. Malaria journal 31 19284592
2017 Quinoxaline derivatives as new inhibitors of coxsackievirus B5. European journal of medicinal chemistry 30 29339251
2012 Protein B5 is required on extracellular enveloped vaccinia virus for repulsion of superinfecting virions. The Journal of general virology 30 22622330
2012 Cytochrome b5: novel roles in steroidogenesis. Molecular and cellular endocrinology 30 23228600
2008 Role of NADPH-cytochrome P450 reductase and cytochrome-b5/NADH-b5 reductase in variability of CYP3A activity in human liver microsomes. Drug metabolism and disposition: the biological fate of chemicals 30 18838505
1999 Structure, interaction and electron transfer between cytochrome b5, its E44A and/or E56A mutants and cytochrome c. Journal of molecular biology 30 9878411
1995 Electron transfer from cytochrome b5 to cytochrome c. Journal of bioenergetics and biomembranes 30 8847346
2016 Let-7a inhibits tumor cell growth and metastasis by directly targeting RTKN in human colon cancer. Biochemical and biophysical research communications 29 27498032
2015 Mechanistic Scrutiny Identifies a Kinetic Role for Cytochrome b5 Regulation of Human Cytochrome P450c17 (CYP17A1, P450 17A1). PloS one 28 26587646
2002 Adrenocortical cytochrome b5 expression during fetal development of the rhesus macaque. Endocrinology 28 11897703
1994 Tobacco cytochrome b5: cDNA isolation, expression analysis and in vitro protein targeting. Plant molecular biology 28 8049375
2023 Vitamin B5 and succinyl-CoA improve ineffective erythropoiesis in SF3B1-mutated myelodysplasia. Science translational medicine 27 36857430
2023 The vitamin B5/coenzyme A axis: A target for immunomodulation? European journal of immunology 27 37482959
1992 Gene-dose-dependent expression of soluble mammalian cytochrome b5 in Escherichia coli. Applied microbiology and biotechnology 27 1369012
1990 Direct electrochemistry of protein-protein complexes involving cytochrome c, cytochrome b5, and plastocyanin. Biochemistry 26 2159330
2014 Regulation of cytochrome b5 expression by miR-223 in human liver: effects on cytochrome P450 activities. Pharmaceutical research 25 24078287
2014 Cytochrome b5 modulates multiple reactions in steroidogenesis by diverse mechanisms. The Journal of steroid biochemistry and molecular biology 25 25446886
2006 Reductive detoxification of arylhydroxylamine carcinogens by human NADH cytochrome b5 reductase and cytochrome b5. Chemical research in toxicology 25 17040106
1998 Electrostatic interaction between NADH-cytochrome b5 reductase and cytochrome b5 studied by site-directed mutagenesis. Biochimica et biophysica acta 25 9602031
2024 Development of a vitamin B5 hyperproducer in Escherichia coli by multiple metabolic engineering. Metabolic engineering 24 38942195
2012 Cytochrome b5 and cytokeratin 17 are biomarkers in bronchoalveolar fluid signifying onset of acute lung injury. PloS one 24 22792238
2006 Dihydroceramide:sphinganine C-4-hydroxylation requires Des2 hydroxylase and the membrane form of cytochrome b5. The Biochemical journal 24 16571104
1994 Fractionation of liver microsomes with polyethylene glycol and purification of NADH-cytochrome b5 oxidoreductase and cytochrome b5. Archives of biochemistry and biophysics 24 7986089
2014 The N-reductive system composed of mitochondrial amidoxime reducing component (mARC), cytochrome b5 (CYB5B) and cytochrome b5 reductase (CYB5R) is regulated by fasting and high fat diet in mice. PloS one 23 25144769
2005 High level expression of peptides and proteins using cytochrome b5 as a fusion host. Protein expression and purification 23 15802225
1993 Differential expression of the mRNAs for the soluble and membrane-bound forms of rabbit cytochrome b5. Biochimica et biophysica acta 23 8439576
2022 Microbial production of vitamin B5: current status and prospects. Critical reviews in biotechnology 20 36210178
2019 Vitamin B5 inhibit RANKL induced osteoclastogenesis and ovariectomy induced osteoporosis by scavenging ROS generation. American journal of translational research 20 31497217
2015 Vitamin B5 and N-Acetylcysteine in Nonalcoholic Steatohepatitis: A Preclinical Study in a Dietary Mouse Model. Digestive diseases and sciences 20 26403427
2004 A relationship between heme binding and protein stability in cytochrome b5. Biochemistry 20 15379561
1998 The influence of mutation at Glu44 and Glu56 of cytochrome b5 on the protein's stabilization and interaction between cytochrome c and cytochrome b5. Biochemistry 20 9760250
1994 Expression of a biologically active plant cytochrome b5 in Escherichia coli. The Biochemical journal 20 7945268
2023 Metabolic Engineering of Saccharomyces cerevisiae for Vitamin B5 Production. Journal of agricultural and food chemistry 19 37154424
2013 Giardia intestinalis incorporates heme into cytosolic cytochrome b₅. Eukaryotic cell 19 24297440

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