| 1993 |
Rabphilin-3A (RPH3A) was identified as a novel protein that selectively interacts with the GTP-bound form of Rab3A but not the GDP-bound form, establishing it as a GTP-state-dependent effector of Rab3A. |
Biochemical pulldown/complex formation assay using GTPγS-bound vs. GDP-bound Rab3A with purified and recombinant rabphilin-3A; cDNA cloning and expression in COS7 cells |
Molecular and cellular biology |
High |
8384302
|
| 1993 |
Rabphilin-3A has two functionally distinct domains: an N-terminal domain (residues 1–280) that binds GTP-Rab3A and a C-terminal domain (residues 281–704) containing two C2 domains that bind phospholipid and Ca2+ in a cooperative manner. |
In vitro binding assays using recombinant full-length, N-terminal, and C-terminal fragments of rabphilin-3A with GTP-Rab3A, phospholipid, and 45Ca2+ |
The Journal of biological chemistry |
High |
8262955
|
| 1993 |
Rabphilin-3A and its N-terminal fragment inhibit Rab3A GAP-stimulated GTPase activity of Rab3A, thereby potentially keeping Rab3A in the GTP-bound active form. |
In vitro GTPase assay measuring basal and GAP-stimulated GTP hydrolysis of Rab3A in the presence of rabphilin-3A or its fragments |
The Journal of biological chemistry |
High |
8226731
|
| 1994 |
Rabphilin-3A is localized on synaptic vesicles in presynaptic terminals, as determined by immunogold electron microscopy of neuromuscular junctions and subcellular fractionation showing enrichment in purified synaptic vesicle fractions. |
Immunogold electron microscopy and subcellular fractionation of rat brain |
Biochemical and biophysical research communications |
High |
8060298
|
| 1994 |
Synaptic targeting of rabphilin-3A depends on Rab3A/3C: in rab3A-deficient mice, rabphilin-3A is decreased at synapses of neurons expressing primarily rab3A and accumulates in perikarya, while neurons expressing rab3C retain normal synaptic rabphilin-3A; rabphilin-3A binds rab3C in vitro. |
Immunofluorescence and Western blot in rab3A knockout mice; in vitro binding assay with rab3C |
Neuron |
High |
7946335
|
| 1994 |
Rabphilin-3A is associated with synaptic vesicles via a vesicle-resident protein in a manner independent of Rab3A; removal of Rab3A or addition of exogenous Rab3A did not affect rabphilin-3A binding to vesicles, but trypsin treatment abolished binding. |
Reconstitution binding assay using salt-stripped synaptic vesicles, Rab GDI extraction of endogenous Rab3A, trypsin treatment |
The Journal of biological chemistry |
Medium |
7806490
|
| 1994 |
Rabphilin-3A is phosphorylated by cyclic AMP-dependent protein kinase (PKA) at its N-terminal region (~0.8 mol phosphate/mol protein), identifying it as a PKA substrate involved in neurotransmitter release regulation. |
In vitro phosphorylation assay with purified recombinant rabphilin-3A and PKA |
Biochemical and biophysical research communications |
High |
7945346
|
| 1994 |
CaMKII phosphorylates rabphilin-3A at Ser34, Thr205, Thr209, and Thr537 (two mol phosphate maximally incorporated), identifying additional regulatory phosphorylation sites. |
In vitro phosphorylation assay with CaMKII purified from rat brain and recombinant rabphilin-3A; phosphorylation site identification |
Biochemical and biophysical research communications |
Medium |
7811264
|
| 1994 |
Rabphilin-3A binds beta-adducin through its C-terminal C2 domain-containing region in the presence of Ca2+ and phosphatidylserine, identifying beta-adducin as a calcium/phospholipid-dependent binding partner. |
Purification and amino acid sequence analysis of co-purified 115 kDa protein; overlay assay and biochemical characterization |
Biochemical and biophysical research communications |
Medium |
7999065
|
| 1994 |
GTP cyclohydrolase I (Mr ~30 kDa) co-immunoprecipitates with rabphilin-3A from PC12 cell lysates and is phosphorylated upon high KCl stimulation, identifying it as a rabphilin-3A-interacting protein in neuroendocrine cells. |
Co-immunoprecipitation from PC12 cell lysate followed by SDS-PAGE and amino acid sequence analysis |
Biochemical and biophysical research communications |
Low |
7802677
|
| 1994 |
Rabphilin-3A has GDP/GTP exchange activity for Rab3A, potentially keeping Rab3A in the GTP-bound form by re-converting GDP-Rab3A produced by GAP activity. |
In vitro GDP/GTP exchange assay with purified Rab3A and rabphilin-3A |
FEBS letters |
Medium |
7926025
|
| 1995 |
Rabphilin-3A is phosphorylated by CaMKII at residues 234 and 274 and by cAMP-dependent protein kinase (PKA) at residue 234, placing the middle region between the Rab3A-binding domain and C2 domains as a convergent regulatory phosphorylation site. |
In vitro phosphorylation assays with CaMKII and PKA; tryptic peptide mapping to identify phosphorylation sites |
The Journal of neuroscience |
High |
7891174
|
| 1996 |
Rabphilin-3A dissociates from synaptic vesicles after exocytosis in a manner requiring Ca2+ and membrane fusion; it interacts with GTP-Rab3A via an N-terminal Zn2+-finger motif, and this interaction is essential for rabphilin binding to synaptic vesicles, showing that Rab3 reversibly recruits rabphilin to vesicles analogously to Ras recruiting Raf. |
Exocytosis-coupled dissociation assay from synaptic vesicles; Zn2+-finger domain mutational analysis; in vitro binding |
The EMBO journal |
High |
8617225
|
| 1996 |
Alpha-actinin interacts with the N-terminal region of rabphilin-3A (the same region that binds GTP-Rab3A), and this interaction stimulates alpha-actinin's ability to cross-link actin filaments into bundles; GTPγS-Rab3A inhibits the rabphilin-3A/alpha-actinin interaction. |
Yeast two-hybrid screen from human brain cDNA library; direct binding assays; actin cross-linking assay |
The Journal of biological chemistry |
High |
8943213
|
| 1996 |
Rabphilin-3A is involved in Ca2+-dependent exocytosis from PC12 cells: reduction of endogenous rabphilin-3A inhibits high K+-induced growth hormone release, and N-terminal, C-terminal, or C2B fragments (but not C2A fragment alone) inhibit release when overexpressed. |
Growth hormone co-expression assay in PC12 cells; antisense knockdown; overexpression of domain fragments |
Biochemical and biophysical research communications |
Medium |
8605005
|
| 1996 |
The Cys-rich region in the N-terminal domain binds two Zn2+ ions and is necessary but not sufficient for efficient Rab3A binding; a minimal Rab3A-binding domain spans residues 45–170; C2 domains are required for efficient membrane attachment in PC12 cells; Rab3A binding targets rabphilin to the correct membrane compartment. |
Deletion and mutagenesis analysis; Rab3A binding assays; GFP-rabphilin subcellular localization in PC12 cells; zinc binding characterization |
Molecular and cellular biology |
Medium |
8756657
|
| 1998 |
Presynaptic microinjection of rabphilin-3A into squid giant synapse reversibly inhibits neurotransmitter release; the N-terminal Rab3A-binding/phosphorylation region and the two C2 domains each independently inhibit release; the N-terminal domain also perturbs endocytosis (altering endosome, coated vesicle, and plasma membrane areas). |
Presynaptic microinjection of recombinant rabphilin-3A and domain fragments into squid giant synapse; electrophysiology; electron microscopy |
The Journal of general physiology |
High |
9450942
|
| 1998 |
Rabphilin phosphorylation at Ser234 is selectively increased by PKA and Ca2+ influx in mossy fiber CA3 synaptosomes but not in CA1 synaptosomes, correlating with the region-specific PKA-dependent LTP in mossy fibers. |
Phosphorylation assay in isolated CA1 and CA3 synaptosomes with forskolin treatment and K+-depolarization; region-specific fractionation of hippocampus |
The Journal of neuroscience |
Medium |
9425005
|
| 1999 |
Crystal structure of activated Rab3A/GTP/Mg2+ bound to the effector domain of rabphilin-3A solved at 2.6 Å resolution; rabphilin-3A contacts Rab3A at two interfaces: switch I/II regions (nucleotide-state sensitive) and a deep pocket (RabCDR) containing the SGAWFF element of rabphilin-3A that confers Rab effector specificity. |
X-ray crystallography at 2.6 Å resolution; biochemical binding data |
Cell |
High |
10025402
|
| 1999 |
NMR solution structure of the C2B domain of rabphilin-3A reveals a Janus-faced architecture: a Ca2+-binding top surface (similar to other C2 domains) and a Ca2+-independent bottom surface bearing a conserved alpha-helix, suggesting Ca2+-independent protein interactions from the bottom surface. |
NMR spectroscopy structure determination |
Nature cell biology |
High |
10559882
|
| 2001 |
High-affinity Rab3 binding is dispensable for rabphilin's stimulatory effect on Ca2+-regulated secretion in HIT-T15 cells; mutations V61A and L83A abolish Rab3 binding but do not impair secretory potentiation; however, mutant R60A retains Rab3 binding but loses stimulatory activity, suggesting secretory potentiation depends on an unknown factor binding to the Rab3-binding domain. |
Point mutagenesis of Rab3-binding domain; secretion assay in HIT-T15 cells; in vitro Rab3 binding assay |
Journal of cell science |
Medium |
10504306
|
| 2001 |
Rabphilin promotes receptor-mediated endocytosis through interaction with Rabaptin-5; this activity is negatively regulated by Rab3. The Rabphilin V61A mutant (unable to bind Rab3) enhances transferrin endocytosis and binds Rabaptin-5, whereas L83A (also Rab3-binding defective) does not interact with Rabaptin-5 and does not enhance endocytosis. |
Transferrin endocytosis assay; co-immunoprecipitation of Rabaptin-5; Rab3-binding mutant analysis in HIT-T15 cells |
Journal of cell science |
Medium |
11309205
|
| 2001 |
In C. elegans, rabphilin mutants show synergistic genetic interactions with hypomorphic SNARE (syntaxin, SNAP-25, synaptobrevin) mutants, causing severe behavioral defects not seen in rab3-SNARE double mutants, establishing a Rab3-independent function of rabphilin in potentiating SNARE function. |
C. elegans genetic epistasis; behavioral assays (locomotion, mechanosensation); pharmacological assays |
The Journal of neuroscience |
High |
11717359
|
| 2001 |
Phosphorylation of rabphilin on Ser234 and Ser274 is dynamically regulated in nerve terminals; soluble rabphilin (not vesicle-bound) is the primary phosphorylation target; phospho-rabphilin shows reduced membrane affinity; phosphorylation requires external Ca2+ and Rab3A; PKA and CaMKII differentially phosphorylate the two sites. |
Phospho-specific antibodies against Ser234 and Ser274; subcellular fractionation; synaptosome stimulation experiments; depolarization assays |
The Journal of neuroscience |
High |
11466418
|
| 2003 |
Rabphilin interacts with Rab3A/B/C/D, Rab8A, and Rab27A/B (but not other Rabs), and Noc2 shows the same specificity; this broader Rab specificity beyond Rab3 suggests rabphilin functions as effector for multiple Rab proteins including Rab27. |
Co-transfection assay testing rabphilin binding to 42 different Rab proteins; site-directed mutagenesis of Rab-binding domain |
The Journal of biological chemistry |
Medium |
12578829
|
| 2004 |
Rabphilin is recruited to dense-core vesicles in PC12 cells through specific interaction with Rab27A, not Rab3A; Rab3A-binding-defective mutant (E50A) still localizes to vesicles, but Rab27A-binding-defective double mutant (E50A/I54A) is cytosolic; this is conserved across C. elegans and Drosophila orthologs. |
Deletion and mutation analysis; live-cell localization in PC12 cells; neuropeptide Y secretion assay; cross-species binding analysis |
The Journal of biological chemistry |
High |
14722103
|
| 2004 |
The C2B domain of rabphilin directly interacts with annexin A4; rabphilin, annexin A4, and synaptotagmin 1 form a novel protein complex in PC12 cells; annexin A4 colocalizes with rabphilin at the plasma membrane. |
Yeast two-hybrid; pulldown assay; co-immunoprecipitation from PC12 cells; immunofluorescence colocalization |
FEBS letters |
Medium |
14960300
|
| 2005 |
The C2B domain of rabphilin directly interacts with the plasma membrane SNARE protein SNAP-25 (EC50 ~0.82 μM; Ca2+ increases affinity ~2-fold); rabphilin expression increases the number of docked dense-core vesicles at the plasma membrane in PC12 cells without altering fusion kinetics; rabphilin-ΔC2B decreases docked vesicles. |
In vitro binding assay (SNAP-25 interaction); TIRFM of neuropeptide Y-Venus in PC12 cells; C2B domain mutagenesis |
The Journal of biological chemistry |
High |
16203731
|
| 2005 |
Rabphilin localizes to the subplasmalemmal actin cytoskeleton via an alpha-actinin-dependent mechanism; purified rabphilin associates with F-actin only in the presence of alpha-actinin; rabphilin stimulates (~8-fold) the association of granules with alpha-actinin-crosslinked F-actin in an in vitro assay. |
Immunofluorescence and immunoelectron microscopy; in vitro F-actin binding assay with purified components; granule-actin co-sedimentation assay |
The Journal of biological chemistry |
Medium |
16043482
|
| 2006 |
Deletion of rabphilin dramatically accelerates recovery of synaptic vesicle pools from use-dependent depression; this phenotype is rescued by wild-type rabphilin but not by rabphilin lacking the C2B domain (which binds SNAP-25); double deletion of rabphilin and synaptobrevin further increases responses from depleted pools, suggesting rabphilin regulates SNARE-dependent re-priming via C2B-SNAP-25 interaction. |
Electrophysiological recordings in rabphilin knockout neurons; viral rescue with wild-type and C2B-mutant rabphilin; synaptobrevin double knockout analysis |
The EMBO journal |
High |
16763567
|
| 2006 |
The polybasic sequence (587KKAKHKTQIKKK598) in the C2B domain of rabphilin is required for SNAP-25 binding; Lys→Gln mutations abolishing SNAP-25 binding significantly decrease plasma-membrane-docked vesicles and inhibit high-KCl-induced DCV exocytosis in PC12 cells. |
SNAP-25 binding assay with polybasic sequence mutants; TIRFM of PC12 cells; high-KCl exocytosis assay |
Journal of neurochemistry |
High |
17156129
|
| 2006 |
The crystal structure of the Ca2+-free C2A domain of rabphilin-3A was solved at 1.92 Å; the domain adopts a classical eight-stranded antiparallel beta-sandwich with conserved Ca2+-binding acidic residues; a conserved Asp→Glu substitution increases rigidity of Ca2+-binding loop 1. |
X-ray crystallography at 1.92 Å resolution |
Acta crystallographica. Section D, Biological crystallography |
High |
16790935
|
| 2006 |
Acidic residues from the C2A-C2B linker interact with the Ca2+-binding region of the C2B domain, providing an unusual Ca2+-binding mode; mutation of these linker residues to Ala caused a 10-fold decrease in C2B Ca2+-binding affinity; this interaction persists in the full C2 domain tandem. |
X-ray crystallography of C2B domain with linker; NMR spectroscopy; Ca2+-binding affinity measurements; site-directed mutagenesis |
The Journal of biological chemistry |
High |
17166855
|
| 2008 |
Both C2A and C2B domains of rabphilin-3A bind PIP2; C2A binds the PIP2 headgroup IP3 in a Ca2+-dependent manner (Kd ~55 μM at saturating Ca2+) via a defined binding site on the concave surface, with IP3 and Ca2+ mutually enhancing binding (TAMA mechanism); C2B binds IP3 in a Ca2+-independent fashion with low affinity via a different binding mode. |
NMR spectroscopy mapping of IP3 binding to each C2 domain; Ca2+-binding affinity measurements |
Protein science |
High |
18434502
|
| 2008 |
The Ca2+-bound solution structure of the C2A domain shows Ca2+ induces a conformational change in Ca2+-binding loop 3 (CBL3) that enables IP3 binding; the structural basis for the TAMA (target-activated messenger affinity) mechanism was determined. |
NMR solution structure determination of Ca2+-bound C2A domain; IP3 docking model; mutagenesis of CBL3 |
The Journal of biological chemistry |
High |
18945677
|
| 2008 |
Rabphilin (as Rab27 effector) undergoes rapid and complete exchange between secretory granules and cytosol in PC12 cells (as measured by FRAP), unlike Granuphilin and Noc2 which show little exchange; both Noc2 and Rabphilin are recruited to granules by Rab27 but Rabphilin does not form stable Rab27 complexes on granules. |
FRAP (fluorescence recovery after photobleaching) of EGFP-tagged Rabphilin, Granuphilin, and Noc2 in PC12 cells |
Biochemical and biophysical research communications |
Medium |
18573236
|
| 2015 |
Rabphilin 3A (Rph3A) is enriched at dendritic spines (postsynaptic site) and forms a ternary complex with GluN2A (binding to GluN2A residues 1349–1389) and PSD-95 (PDZ3 domain) via its N-terminal domain; Rph3A silencing reduces surface localization of synaptic GluN2A and NMDAR currents; interfering peptides disrupting GluN2A/Rph3A interaction decrease NMDAR-mediated currents and GluN2A density at dendritic spines. |
Protein-protein interaction assays (co-IP, GST pulldown); RNAi knockdown in neurons; whole-cell patch clamp; confocal imaging; in vivo peptide injection in organotypic slices |
Nature communications |
High |
26679993
|
| 2017 |
Crystal structures of rabphilin-3A C2B domain bound to SNAP-25 and to PIP2 were solved; rabphilin-3A C2B uses a unique structural element (bottom alpha-helix) to contact the same SNAP-25 surface as synaptotagmin-1; the C2B domain can simultaneously bind PIP2/Ca2+ and SNAP-25, adopting a conformation compatible with interaction with the complete SNARE complex and suggesting membrane bending in Ca2+-dependent fusion. |
X-ray crystallography of C2B-SNAP25 and C2B-PIP2 complexes; biochemical binding analyses |
Proceedings of the National Academy of Sciences of the United States of America |
High |
28634303
|
| 2017 |
PKN1 phosphorylates RPH3A, which enhances binding of RPH3A to GTP-bound RAB21; PKN1 and RPH3A are required for polarized localization of RAB21 and RPH3A in neutrophils, leading to PIP5K1C90 polarization essential for integrin activation and neutrophil adhesion to endothelial cells. |
Kinase assay; co-IP; confocal imaging of neutrophil polarization; siRNA knockdown; inflammatory adhesion assay; myeloid-specific PKN1 knockout mice |
Cell reports |
High |
28636945
|
| 2018 |
A missense variant in RPH3A (p.Arg269Gln) strongly impairs binding of rabphilin-3A to 14-3-3 protein; this variant is associated with presynaptic congenital myasthenic syndrome with altered synaptic vesicle homeostasis. |
Expression studies in mammalian cell lines; 14-3-3 binding assay comparing wild-type and mutant rabphilin-3A |
Molecular genetics & genomic medicine |
Medium |
29441694
|
| 2020 |
ARF6 binds RPH3A and enhances the interaction between plasma membrane PtdIns4P and RPH3A; ARF6 polarization at the plasma membrane coincides with RPH3A, RAB21, PIP5K1C90, and PM PtdIns4P in neutrophils upon integrin stimulation; ARF6 functions as a coincidence-detection code directing RPH3A polarization. |
siRNA knockdown of ARF6; dominant-negative ARF6 mutant; co-immunoprecipitation; confocal imaging of neutrophil polarization; ARF6 inhibitor SecinH3 |
Journal of immunology |
Medium |
31924649
|
| 2021 |
UBE3A mono-ubiquitinates RPH3A in mouse brain via a non-degradative mechanism; the UBE3A and RAB3A binding sites on RPH3A partially overlap, and RAB3A binding interferes with UBE3A binding; reduced RPH3A levels in absence of RAB3A are not mediated by UBE3A; an AS-linked UBE3A missense mutation abrogates interaction with RPH3A. |
Co-immunoprecipitation; ubiquitination assays in mouse brain; RAB3A knockout comparison; UBE3A missense variant binding assay |
Scientific reports |
Medium |
33542309
|
| 2022 |
Rabphilin-3A interacts with alpha-synuclein; in vivo intrastriatal injection of alpha-synuclein preformed fibrils reduces synaptic levels of Rph3A and impairs Rph3A/NMDAR interaction; restoring Rph3A expression or disrupting the Rph3A/alpha-synuclein complex prevents dendritic spine loss and rescues early motor defects. |
In vivo intrastriatal injection; Western blotting; co-immunoprecipitation; confocal imaging; motor behavioral testing; in vitro primary neuron experiments with small molecule |
Pharmacological research |
Medium |
35918045
|
| 2022 |
Rabphilin-3A promotes SNARE complex assembly by binding the N-peptide region of SNAP-25 via the C2B bottom alpha-helix; this interaction is enabled by an intramolecular interplay between the N-terminal Rab-binding domain and the C-terminal C2AB domain; the C2B/SNAP-25 N-peptide interaction induces a conformational switch from random coils to alpha-helical structure in the SNAP-25 SNARE motif, accelerating SNARE complex assembly; disrupting this interaction impairs vesicle docking and fusion in PC12 cells. |
In vitro SNARE complex assembly assay; NMR; binding studies; mutagenesis; TIRF microscopy in PC12 cells |
eLife |
High |
36173100
|
| 2022 |
Rph3A overexpression in hippocampal neurons increases dendritic spine density, increases synaptic GluN2A-containing NMDARs, and decreases surface GluA1-containing AMPARs; these changes occlude LTP-induced spine formation but do not prevent LTD-induced spine loss. |
Confocal imaging of spine density; surface NMDAR and AMPAR quantification; LTP and LTD induction protocols in primary hippocampal neurons |
Cells |
Medium |
35626653
|
| 2023 |
Rph3A undergoes liquid-liquid phase separation dependent on arginine residues in its N-terminal domain; phase separation promotes GluN2A clustering by binding GluN2A C-terminal domain; a ternary Rph3A/GluN2A/PSD95 complex promotes Rph3A phase separation; disrupting Rph3A phase separation suppresses synaptic and extrasynaptic surface clustering, synaptic localization, and stability of GluN2A and reduces NMDAR synaptic responses. |
In vitro phase separation assay; mutagenesis of arginine residues; FRAP; super-resolution imaging; electrophysiology in hippocampal neurons |
Nature communications |
High |
36693856
|
| 2023 |
RPH3A missense gain-of-function variants (p.Thr450Ser, p.Asn618Ser) reduce synaptic localization of GluN2A; p.Thr450Ser also increases surface GluN2A levels; both variants increase GluN2A-dependent NMDAR currents and alter postsynaptic calcium levels; Thr450Ser expression affects dendritic spine morphology. |
Primary hippocampal neuronal cultures; immunofluorescence; whole-cell patch clamp; calcium imaging; spine morphology analysis |
Genetics in medicine |
Medium |
37403762
|
| 2018 |
CAND1 (cullin-associated NEDD8-dissociated protein 1) was identified as a rabphilin-3A-binding protein in posterior pituitary by GST-pulldown and co-immunoprecipitation; CAND1 overexpression leads to deubiquitylation of rabphilin-3A in PC12 cells and enhances both basal and KCl-stimulated AVP secretion. |
GST-pulldown; proteomic analysis; co-immunoprecipitation; ubiquitination assay; AVP secretion assay in PC12 cells |
Endocrine journal |
Medium |
29367474
|
| 2024 |
RPH3A is a negative regulator of dense-core vesicle (DCV) exocytosis in hippocampal neurons; RPH3A KO increases DCV exocytosis ~3-fold; RAB3A-binding deficient RPH3A loses synaptic enrichment but still restores WT DCV exocytosis; SNAP25-binding deficient RPH3A does not rescue DCV exocytosis, indicating SNAP25 interaction mediates the inhibitory function; RPH3A resides stationary at presynapses and does not travel with DCVs. |
Live-cell imaging at single-vesicle resolution in RPH3A knockout hippocampal neurons; viral re-expression of wild-type and mutant RPH3A; tetanus neurotoxin ablation of regulated secretion |
eLife |
High |
39412498
|
| 2025 |
RPH3A variants p.(Arg209Lys) and p.(Gln508His) reduce presynaptic glutamate release and decrease synaptic retention of GluN2A-containing NMDARs, with reduced calcium event frequency at dendritic spines, demonstrating both pre- and post-synaptic dysfunction from disease-associated RPH3A missense variants. |
Primary hippocampal neuronal cultures; electrophysiology; calcium imaging; immunofluorescence of GluN2A synaptic localization |
Scientific reports |
Medium |
40082528
|