| 2002 |
RNF40 (STARING) was identified as a novel RING finger E3 ubiquitin-protein ligase that binds syntaxin 1, recruits the E2 enzyme UbcH8, and facilitates ubiquitination and proteasome-dependent degradation of syntaxin 1. |
Co-immunoprecipitation, ubiquitination assay, proteasome inhibitor treatment, direct binding assay |
The Journal of biological chemistry |
High |
12121982
|
| 2000 |
RNF40 (RBP95) directly binds the retinoblastoma protein (pRb) via an LXCXE motif; this interaction requires the LXCXE motif of RBP95 and the pocket domain of pRb. RBP95 also homodimerizes through a leucine zipper and localizes to the nucleus. |
In vitro binding assay, in vivo co-immunoprecipitation, point mutagenesis of LXCXE motif, GFP fusion nuclear localization imaging |
Biochemical and biophysical research communications |
Medium |
10944455
|
| 2011 |
RNF40 forms a heterodimeric E3 ubiquitin ligase complex with RNF20 that monoubiquitinates histone H2B at lysine 120 (H2B-K120ub1), facilitating histone H3K4 and H3K79 methylation and transcriptional regulation. |
Knockdown/depletion experiments, chromatin immunoprecipitation, Western blot for histone marks |
Human molecular genetics |
High |
22021426 22354749
|
| 2011 |
The tumor suppressor CDC73 interacts with RNF20 and RNF40 at discrete residues and is required for maintenance of H2B-K120 monoubiquitination; loss of nuclear CDC73 significantly reduces H2Bub1 levels without affecting H3K4me3. |
Yeast two-hybrid, co-immunoprecipitation, siRNA knockdown, Western blot for histone marks, analysis of CDC73 mutant parathyroid tumors |
Human molecular genetics |
High |
22021426
|
| 2011 |
RNF40 depletion results in sustained H2AX phosphorylation, decreased H3K56 acetylation, and impaired recruitment of the FACT complex (specifically SUPT16H) to chromatin following DNA double-strand breaks (DSBs), leading to defects in DNA end resection and timely DNA repair. |
siRNA knockdown, immunofluorescence for γH2AX and H3K56ac, chromatin fractionation, flow cytometry for checkpoint activation |
Cell cycle (Georgetown, Tex.) |
Medium |
22031019
|
| 2012 |
Deficiency in Rnf20/Rnf40 (Bre1a/b) leads to replication-associated double-strand breaks arising from aberrant RNA-DNA structures (R-loops), chromosomal instability, and breakage-fusion-bridge cycles, establishing a role for the RNF20/RNF40 complex in genome stability maintenance. |
Bre1-deficient cell line generation, cytogenetic analysis, R-loop detection assay, DNA content analysis |
Cancer research |
Medium |
22354749
|
| 2014 |
Arsenite directly binds to the RING finger domains of RNF20 and RNF40 via cysteine residues, inhibiting H2B ubiquitination in cells, impairing BRCA1 and RAD51 recruitment to DSB sites, and compromising DSB repair. |
In vitro binding assay, cellular H2B ubiquitination assay, immunofluorescence for BRCA1/RAD51 recruitment, comet assay for DSB repair |
Journal of the American Chemical Society |
Medium |
25170678
|
| 2016 |
Crystal structure of the RNF20 RING domain reveals it is a homodimer that specifically interacts with the Ube2B~Ub conjugate; the RING domains of RNF20 and RNF40 form a stable heterodimer with E3 ligase activity. Mutagenesis identified key contacts at the E3–E2 and E3–ubiquitin interfaces required for ubiquitin transfer. |
X-ray crystallography, mutagenesis, in vitro ubiquitin transfer assay |
Journal of molecular biology |
High |
27569044
|
| 2019 |
RNF20 and RNF40 are required for DSB repair via both homologous recombination and class switch recombination (NHEJ) in mouse B cells; DSBs trigger a global increase in H2Bub1 regulated jointly by ATM and ATR kinases, and H2AX phosphorylation is dispensable for H2Bub1 induction. |
Genetic knockout in B cells, class switch recombination assay, HR assay, Western blot for histone marks, inhibitor studies (ATM/ATR) |
Molecular and cellular biology |
Medium |
30692271
|
| 2019 |
Loss of RNF40 in colorectal cancer cells decreases nuclear localization of NF-κB following TNF-α treatment and reduces expression of NF-κB-associated cytokines; colon-specific Rnf40 deletion in mice reduces colitis burden. |
siRNA knockdown, NF-κB nuclear localization by immunofluorescence, cytokine mRNA measurement, in vivo conditional knockout mouse model of colitis |
Journal of Crohn's & colitis |
Medium |
30321325
|
| 2019 |
RNF40 depletion in colorectal cancer cells induces apoptosis via elevated caspase 3/7 activity, associated with reduced anti-apoptotic and increased pro-apoptotic BCL2 family member expression; H2Bub1 directly occupies the transcribed regions of anti-apoptotic genes. |
siRNA knockdown, flow cytometry (Annexin V, propidium iodide), caspase 3/7 activity assay, mRNA-seq, ChIP for H2Bub1, caspase inhibitor rescue (Z-VAD-FMK) |
Clinical epigenetics |
Medium |
31266541
|
| 2020 |
RNF40-driven H2B monoubiquitination is essential for transcriptional activation of RHO/ROCK/LIMK pathway components and proper actin-cytoskeleton dynamics in HER2+ breast cancer, acting through trans-histone crosstalk with H3K4 trimethylation. |
Tissue-specific Rnf40 knockout mouse model (mammary), cell culture RNF40 depletion, ChIP for histone marks, transcriptome analysis, actin cytoskeleton imaging |
Cell death & disease |
Medium |
33070155
|
| 2020 |
RNF40 is required for early reprogramming to iPSCs; loss of RNF40-mediated H2Bub1 impairs early gene activation, controls EZH2 expression, and promotes resolution of H3K4me3/H3K27me3 bivalency on pluripotency genes. |
siRNA knockdown during reprogramming, iPSC colony counting, mRNA-seq, ChIP for H3K4me3, H3K27me3, H2Bub1 |
Cell death & disease |
Medium |
32341358
|
| 2020 |
RNF40 has a stage-dependent function in osteoblasts: it is required for early lineage specification but dispensable in mature osteoblasts. RNF40 loss decreases osteoclast number/function by reducing RANKL (Tnfsf11) expression, which is a direct H2Bub1 target gene in osteoblasts. |
Osteoblast-specific conditional Rnf40 knockout mouse, micro-CT bone analysis, osteoclast function assays, ChIP for H2Bub1 on Tnfsf11 locus |
Cell death and differentiation |
Medium |
32901120
|
| 2021 |
RNF20 and RNF40 regulate Vitamin D Receptor (VDR) gene expression and VDR target genes in intestinal epithelial cells via H3K4me3 occupancy at the Vdr locus; intestinal-specific deletion of Rnf20 or Rnf40 causes spontaneous colorectal inflammation in mice. |
Conditional intestinal Rnf20/Rnf40 knockout mice, mRNA-seq, ChIP-seq for H3K4me3 and H2Bub1, IBD patient biopsy ChIP-seq |
Cell death and differentiation |
High |
34088983
|
| 2023 |
Cryo-EM structures of the RNF20/RNF40-hRAD6A ubiquitin transfer complex on nucleosomal H2B were captured using chemical trapping; RNF40 directly binds nucleosomal DNA, revealing a conserved E3/E2/nucleosome interaction pattern. An unconventional non-hydrophobic E3 RING–E2 interface positions the E2 directly above the target lysine residue. |
Chemical trapping of transient ubiquitin transfer intermediate, cryo-electron microscopy structure determination, mutagenesis |
Molecular cell |
High |
37633270
|
| 2023 |
RNF40/H2Bub1 axis promotes cancer stem cell properties and drug tolerance in TNBC by supporting the glycolytic program and pro-tumorigenic YAP1 signaling. |
RNF40 depletion (siRNA/shRNA), transcriptome analysis, ChIP for H2Bub1, cancer stem cell functional assays, metabolic flux analysis |
Cell death & disease |
Medium |
37770435
|
| 2024 |
RNF40 directly ubiquitinates LIMA1 protein via an interaction requiring the 1–166 aa fragment of LIMA1, promoting its proteasome-dependent degradation in the cytoplasm and thereby suppressing LIMA1-mediated lipid accumulation. |
Co-immunoprecipitation, ubiquitination assay, proteasome inhibitor treatment, domain deletion mapping, lipid content measurement, Western blot |
Cell death discovery |
Medium |
38909032
|
| 2025 |
RNF40 catalyzes K6- and K11-linked polyubiquitination of KDM6A, targeting it for autophagic degradation via TAX1BP1, thereby restricting coronavirus receptor expression and infection. |
Genetic knockdown/overexpression of RNF40, ubiquitin linkage-specific analysis, autophagic degradation assay, viral infection assay in primary human airway cells |
Advanced science |
Medium |
41691482
|
| 2025 |
RNF40 facilitates K48-linked polyubiquitination and proteasomal degradation of Parkin in cerebrovascular endothelial cells, thereby inhibiting mitophagy; Rnf40 knockdown in spontaneously hypertensive rats restores mitophagy and tight junction proteins, improving cerebrovascular barrier function. |
AAV-mediated Rnf40 knockdown in SHR rat model, ubiquitination assay (K48 linkage), mitophagy assay, tight junction protein Western blot, cerebral blood flow measurement |
CNS neuroscience & therapeutics |
Medium |
39777866
|
| 2026 |
Crystal structure of the RNF20/RNF40-WAC complex (modeled by AlphaFold with experimental validation) reveals extensive interfaces with WAC; these interactions are required for efficient RNF20/RNF40-catalyzed H2Bub1 in vitro and in vivo, with electrostatic interactions at the interface encoding binding specificity distinct from the yeast Bre1-Lge1 complex. |
Crystal structure (Bre1-Lge1), AlphaFold model (RNF20/RNF40-WAC), in vitro ubiquitination assay, in vivo functional assays, mutagenesis |
Nucleic acids research |
High |
41533567
|
| 2026 |
H2B S112 GlcNAcylation allosterically stimulates RNF20/RNF40-RAD6A-mediated H2B K120 monoubiquitination; cryo-EM of a chemically trapped complex shows GlcNAc interacts with the E2 enzyme RAD6A (not the E3 RNF40/RNF20), enhancing nucleophilicity of H2B K120 for ubiquitin transfer. The C2 N-acetyl group and β-configuration of C1 on the GlcNAc moiety are essential. |
Chemical synthesis of GlcNAc-modified nucleosomes, cryo-EM structure of trapped complex, mutagenesis, kinetic ubiquitination assay, structure-activity relationship analysis |
Nature chemical biology |
High |
41495224
|
| 2025 |
RNF20/RNF40 and H2Bub1 are dispensable for transcription restart after DNA damage; RNF20/RNF40, SET1/COMPASS, and DOT1L are not required for RNAPII elongation restoration following transcription-blocking lesions. |
Genetic depletion of RNF20/RNF40, SET1/COMPASS, DOT1L; transcription restart assay after DNA damage; ChIP for H2Bub1 and H3K4me3 |
bioRxivpreprint |
Medium |
|
| 2024 |
RNF40 physically interacts with RTF1 and is required for H2B monoubiquitination-dependent Th17 cell differentiation; loss of RNF40 impairs Th17 differentiation while leaving regulatory T cells unaffected. |
Genetic knockdown/KO of RNF40 in T cells, Th17 differentiation assay, H2Bub1 ChIP, co-immunoprecipitation of RNF40-RTF1 |
bioRxivpreprint |
Low |
|