Affinage

REEP6

Receptor expression-enhancing protein 6 · UniProt Q96HR9

Length
211 aa
Mass
23.4 kDa
Annotated
2026-04-28
48 papers in source corpus 10 papers cited in narrative 10 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

REEP6 is a rod photoreceptor-enriched ER-shaping protein that facilitates the trafficking of transmembrane cargo from the endoplasmic reticulum to the plasma membrane, and whose loss causes ER stress, photoreceptor degeneration, and impaired signaling in multiple cell types. The retina-specific isoform REEP6.1, driven by NRL binding at an intronic enhancer, is the sole functional isoform in adult rods; isoform-specific deletion phenocopies full knockout, and only REEP6.1 overexpression rescues rod degeneration (PMID:24691551, PMID:34104971). REEP6 localizes to the inner segment ER and a subset of clathrin-coated vesicles where it interacts with the t-SNARE Syntaxin3; its absence leads to near-complete loss of retinal guanylate cyclases GC1/GC2, ER expansion, and ER stress-mediated apoptosis in rods (PMID:28475715, PMID:28369466). Beyond the retina, REEP6 promotes plasma membrane targeting of adenylate cyclase 3 (ADCY3) in brown adipocytes, coupling ER-to-surface trafficking to β-adrenergic/PKA signaling and thermogenesis (PMID:35150731).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2014 High

    Identifying how REEP6 expression is restricted to rod photoreceptors resolved the transcriptional logic linking NRL, a master rod-fate transcription factor, to ER-shaping gene expression via an intronic enhancer that drives the retina-specific REEP6.1 isoform.

    Evidence ChIP of NRL at Reep6 intron 1, reporter assays, retinal explant transfection, and 5′-RACE isoform mapping

    PMID:24691551

    Open questions at the time
    • Whether other rod-enriched transcription factors co-regulate REEP6.1
    • Chromatin accessibility dynamics at the intronic enhancer during photoreceptor differentiation
  2. 2016 High

    Demonstration that human disease-associated REEP6 missense variants destabilize the protein and cause progressive photoreceptor degeneration in a knock-in mouse established REEP6 as a retinitis pigmentosa gene and linked protein stability to rod survival.

    Evidence Patient variant analysis; mutant protein expression in cultured cells; CRISPR knock-in mouse (p.Leu135Pro) with ERG and histology

    PMID:27889058

    Open questions at the time
    • Structural basis for destabilization by P128L and L135P mutations
    • Whether protein stabilization strategies can slow degeneration
  3. 2017 High

    Knockout studies resolved the subcellular function of REEP6 by showing that it shapes inner segment ER, is required for GC1/GC2 expression, and localizes to clathrin-coated vesicles where it interacts with Syntaxin3 — establishing a model in which REEP6 links ER morphology to vesicular cargo trafficking in rods.

    Evidence CRISPR Reep6 KO mouse; TEM and serial block-face SEM; immunohistochemistry for GC1/GC2, CHOP, caspase-12; co-IP of REEP6 with Syntaxin3; co-localization with clathrin-coated vesicle markers

    PMID:28369466 PMID:28475715

    Open questions at the time
    • Whether REEP6 directly shapes ER tubules like other REEP/Yop1 family members or acts primarily through vesicular trafficking
    • Mechanism by which GC1/GC2 are specifically lost while rhodopsin trafficking is unaffected
    • Whether the Syntaxin3 interaction is direct or bridged
  4. 2021 High

    Isoform-specific knockout and rescue experiments demonstrated that REEP6.1 (containing exon 5) is the sole functional isoform in adult rods and is non-redundant with REEP6.2, resolving a key question about isoform specificity.

    Evidence Reep6 exon 5-specific KO mouse; AAV-mediated overexpression of REEP6.1 vs. REEP6.2 in Reep6 KO retina; ERG; histology

    PMID:34104971

    Open questions at the time
    • What structural feature of the exon 5-encoded 27 amino acids confers rod-specific function
    • Whether REEP6.2 has a function in other tissues
  5. 2022 High

    Discovery that REEP6 facilitates ADCY3 plasma membrane targeting in brown adipocytes extended its trafficking role beyond the retina and linked it to β-adrenergic signaling and energy metabolism.

    Evidence REEP6 KO mouse on high-fat diet; adipocyte knockdown; confocal and electron microscopy of ADCY3 localization; indirect calorimetry

    PMID:35150731

    Open questions at the time
    • Whether REEP6 directly binds ADCY3 or acts through an intermediary
    • Generality of REEP6 trafficking function across additional GPCR-coupled effectors
  6. 2022 Medium

    Identification of miR-672-5p as a direct post-transcriptional repressor of REEP6 in dorsal horn neurons revealed a non-retinal regulatory axis and implicated REEP6 upregulation in neuropathic pain-associated neuronal hyperexcitability.

    Evidence Dual-luciferase reporter assay for miR-672-5p/REEP6 3′UTR; intrathecal agomir/antagomir injection; electrophysiology and behavioral pain assays

    PMID:36064821

    Open questions at the time
    • Whether REEP6 upregulation is causally sufficient for hyperexcitability or is one of multiple miR-672-5p targets
    • Replication in independent pain models
  7. 2026 High

    Showing that WTAP-mediated m6A methylation of the Reep6 3′UTR promotes its translation established epitranscriptomic regulation as a mechanism controlling REEP6 protein levels in rod photoreceptors.

    Evidence Conditional Wtap KO mouse; m6A-seq; polysome profiling; AAV-mediated WTAP rescue

    PMID:41796262

    Open questions at the time
    • Identity of the m6A reader(s) that mediate REEP6 translational enhancement
    • Relative contribution of transcriptional (NRL) versus epitranscriptomic (WTAP/m6A) regulation to total REEP6 protein levels

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown whether REEP6 directly tubulates ER membranes like canonical REEP/Yop1 family members, what structural feature of the exon 5-encoded segment confers isoform-specific function, and how cargo selectivity (e.g., GC1/GC2 but not rhodopsin) is achieved at the molecular level.
  • No in vitro reconstitution of REEP6 membrane-shaping activity
  • No high-resolution structure of REEP6 or the REEP6–Syntaxin3 complex
  • Mechanism of selective cargo recognition unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0060090 molecular adaptor activity 2
Localization
GO:0005783 endoplasmic reticulum 2 GO:0031410 cytoplasmic vesicle 1
Pathway
R-HSA-1852241 Organelle biogenesis and maintenance 2 R-HSA-5653656 Vesicle-mediated transport 2 R-HSA-9609507 Protein localization 2 R-HSA-162582 Signal Transduction 1

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 REEP6 expression in rod photoreceptors is regulated by the bZIP transcription factor NRL, which binds within Reep6 intron 1 to drive expression of the retina-specific isoform REEP6.1 via an intronic enhancer sequence. Chromatin immunoprecipitation (ChIP) assay identifying NRL binding in Reep6 intron 1; reporter assays in cultured cells; retinal explant transfections mapping the intronic enhancer; exon-specific Taqman assay and 5'-RACE for isoform identification Human molecular genetics High 24691551
2016 REEP6 is a member of the REEP/Yop1 family of ER-shaping proteins expressed in the retina; a retina-specific isoform REEP6.1 (containing 27 additional amino acids from exon 5) is specifically expressed in rod photoreceptors, and missense variants (p.Pro128Leu, p.Leu135Pro) and a frameshift in REEP6.1 destabilize the protein in cultured cells. Expression analysis in human 3D organoid optic cups; expression of mutant proteins in cultured cells; CRISPR-Cas9 knock-in mouse model with p.Leu135Pro variant showing progressive photoreceptor degeneration American journal of human genetics High 27889058
2017 REEP6 localizes to the inner segment and outer plexiform layer of rod photoreceptors; loss of REEP6 causes expansion of distal ER and increased mitochondria in rod inner segments, nearly undetectable expression of retinal guanylate cyclases GC1 and GC2, increased CHOP expression and caspase-12 activation indicating ER stress-mediated apoptosis, but does not affect rhodopsin, Rom1, or peripherin/rds trafficking. CRISPR/Cas9 Reep6 knockout mouse; transmission electron microscopy and 3View serial block-face scanning EM; electroretinography; immunohistochemistry; Western blot for GC1, GC2, CHOP, caspase-12 Human molecular genetics High 28475715
2017 REEP6 is detected in a subset of Clathrin-coated vesicles and physically interacts with the t-SNARE Syntaxin3, implicating it in cargo trafficking via clathrin-coated vesicles to selected membrane sites in rod photoreceptors. Reep6-/- mouse model; immunofluorescence co-localization of REEP6 with clathrin-coated vesicle markers; co-immunoprecipitation of REEP6 with Syntaxin3 Human molecular genetics High 28369466
2016 REEP6 interacts with CXCR1 (but not CXCR2), and overexpression of REEP6 enhances IL-8-stimulated cellular responses through CXCR1, while depletion impairs ligand-stimulated receptor internalization and β-arrestin2 intracellular clustering without affecting basal plasma membrane expression of CXCR1. Co-immunoprecipitation; overexpression and siRNA knockdown in cultured cells; β-arrestin2 clustering assay; ERK phosphorylation measurement; in vivo xenograft model Scientific reports Medium 27966653
2021 The Reep6.1 isoform (containing exon 5) is the only isoform expressed in adult rod photoreceptors and is functionally distinct from Reep6.2; isoform-specific knockout (deletion of exon 5) causes rod degeneration equivalent to full knockout, and overexpression of Reep6.2 fails to rescue the knockout phenotype while Reep6.1 overexpression does rescue it. Isoform-specific knockout mouse (Reep6E5/E5); AAV-mediated overexpression rescue experiments in Reep6 knockout mice; electroretinography; histology Human molecular genetics High 34104971
2022 REEP6 plays a role in β-adrenergic signal transduction in adipocytes by facilitating the expression and trafficking of adenylate cyclase 3 (ADCY3) to the plasma membrane; REEP6 KO reduces ADCY3 plasma membrane targeting and severely impairs protein kinase A-mediated signaling in brown adipose tissue. REEP6 knockout mouse model; adipocyte-specific in vitro knockdown in C3H10T1/2 and primary adipocytes; confocal and electron microscopy; Western blot; indirect calorimetry; glucose tolerance test; high-fat diet model Metabolism: clinical and experimental High 35150731
2022 miR-672-5p directly regulates REEP6 expression in spinal dorsal horn neurons; downregulation of miR-672-5p increases REEP6 levels and contributes to neuronal hyperexcitability and neuropathic pain, as demonstrated by direct interaction between miR-672-5p and REEP6 mRNA 3'UTR. miRNA microarray; intrathecal injection of miR-672-5p agomir/antagomir; dual-luciferase reporter assay confirming miR-672-5p binding sites in REEP6 mRNA; electrophysiology (sEPSC recording); behavioral pain assays Neurochemical research Medium 36064821
2026 WTAP-mediated m6A methylation facilitates translation of REEP6 (along with PDE6B and RDH12) in rod photoreceptors through m6A deposition in the 3'UTR of Reep6 mRNA; loss of WTAP abolishes m6A modification and reduces REEP6 protein expression, contributing to retinal degeneration. Conditional Wtap knockout mouse; m6A sequencing; polysome profiling/ribosome association assays; AAV-mediated WTAP re-expression rescue; CAG-Wtap transgenic cross Science China. Life sciences High 41796262
2025 In vitro expression of REEP6 alters ER marker distribution and Golgi morphology; Reep6 knockout mice show reduced expression of multiple rod phototransduction proteins (PDE6, guanylate cyclases, rhodopsin, GRK1) at the transcript level, and activation of inflammatory pathways. Novel Reep6 knockout mouse (exons 2-5 deletion); in vitro REEP6 expression with ER/Golgi marker imaging; RNA-seq; Western blot bioRxivpreprint Medium bio_10.1101_2025.03.02.641069

Source papers

Stage 0 corpus · 48 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 Identification of a functional transposon insertion in the maize domestication gene tb1. Nature genetics 543 21946354
2006 A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nature genetics 279 16642024
2003 Pattern of diversity in the genomic region near the maize domestication gene tb1. Proceedings of the National Academy of Sciences of the United States of America 186 14701910
2006 Phylogenetic analysis of the "ECE" (CYC/TB1) clade reveals duplications predating the core eudicots. Proceedings of the National Academy of Sciences of the United States of America 151 16754863
2016 Mutations in REEP6 Cause Autosomal-Recessive Retinitis Pigmentosa. American journal of human genetics 103 27889058
2011 Evolution and diversification of the CYC/TB1 gene family in Asteraceae--a comparative study in Gerbera (Mutisieae) and sunflower (Heliantheae). Molecular biology and evolution 99 22101417
2017 REEP6 deficiency leads to retinal degeneration through disruption of ER homeostasis and protein trafficking. Human molecular genetics 38 28475715
2011 Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.). PloS one 34 21799845
2015 Analysis of the CYC/TB1 class of TCP transcription factors in basal angiosperms and magnoliids. The Plant journal : for cell and molecular biology 33 25557238
2017 Evolution and Expression Patterns of CYC/TB1 Genes in Anacyclus: Phylogenetic Insights for Floral Symmetry Genes in Asteraceae. Frontiers in plant science 30 28487706
2017 REEP6 mediates trafficking of a subset of Clathrin-coated vesicles and is critical for rod photoreceptor function and survival. Human molecular genetics 28 28369466
2014 Regulation of a novel isoform of Receptor Expression Enhancing Protein REEP6 in rod photoreceptors by bZIP transcription factor NRL. Human molecular genetics 27 24691551
2016 The accessory proteins REEP5 and REEP6 refine CXCR1-mediated cellular responses and lung cancer progression. Scientific reports 26 27966653
2008 Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 24 18780751
2020 A CYC/TB1-type TCP transcription factor controls spikelet meristem identity in barley. Journal of experimental botany 23 32915968
2018 Evolutionary diversification of CYC/TB1-like TCP homologs and their recruitment for the control of branching and floral morphology in Papaveraceae (basal eudicots). The New phytologist 23 29949661
2022 REEP6 knockout leads to defective β-adrenergic signaling in adipocytes and promotes obesity-related metabolic dysfunction. Metabolism: clinical and experimental 22 35150731
2014 The effect of altered dosage of a mutant allele of Teosinte branched 1 (tb1-ref) on the root system of modern maize. BMC genetics 21 24524734
1988 Specificity of Mycobacterium tuberculosis phenolic glycolipid (PGL-Tb1) antiserum. Annales de l'Institut Pasteur. Microbiology 19 2472828
2005 Deleted in polyposis 1-like 1 gene (Dp1l1): a novel gene richly expressed in retinal ganglion cells. Investigative ophthalmology & visual science 14 15728532
2017 Synthesis and immunogenicity of PG-tb1 monovalent glycoconjugate. European journal of medicinal chemistry 13 28411454
2021 Autosomal Recessive Retinitis Pigmentosa Associated with Three Novel REEP6 Variants in Chinese Population. Genes 12 33917198
2023 Comparison of interferon-gamma production between TB1 and TB2 tubes of QuantiFERON-TB Gold Plus: a meta-analysis. Clinical chemistry and laboratory medicine 11 37221870
2021 Transcript isoforms of Reep6 have distinct functions in the retina. Human molecular genetics 10 34104971
2020 TB1: from domestication gene to tool for many trades. Journal of experimental botany 10 32761247
2015 Natural variation in teosinte at the domestication locus teosinte branched1 (tb1). PeerJ 10 25909039
2014 A toolbox for tuberculosis (TB) diagnosis: an Indian multi-centric study (2006-2008); evaluation of serological assays based on PGL-Tb1 and ESAT-6/CFP10 antigens for TB diagnosis. PloS one 10 24797271
2018 Molecular cloning and sequence variance analysis of the TEOSINTE BRANCHED1 (TB1) gene in bermudagrass [Cynodon dactylon (L.) Pers]. Journal of plant physiology 9 30081253
2018 Characterization of specific CD4 and CD8 T-cell responses in QuantiFERON TB Gold-Plus TB1 and TB2 tubes. Tuberculosis (Edinburgh, Scotland) 9 30514508
2019 Novel REEP6 gene mutation associated with autosomal recessive retinitis pigmentosa. Documenta ophthalmologica. Advances in ophthalmology 8 31538292
2024 The chloroplast pentatricopeptide repeat protein RCN22 regulates tiller number in rice by affecting sugar levels via the TB1-RCN22-RbcL module. Plant communications 7 39205390
2023 Differential chromatin binding preference is the result of the neo-functionalization of the TB1 clade of TCP transcription factors in grasses. The New phytologist 7 36484138
2022 The 'Candidatus Phytoplasma mali' effector protein SAP11CaPm interacts with MdTCP16, a class II CYC/TB1 transcription factor that is highly expressed during phytoplasma infection. PloS one 7 36520844
2018 A novel nonsense variant in REEP6 is involved in a sporadic rod-cone dystrophy case. Clinical genetics 7 29120066
2009 Polymorphisms of the apoptosis-associated gene DP1L1 (deleted in polyposis 1-like 1) in colon cancer and inflammatory bowel disease. Journal of cancer research and clinical oncology 7 19924442
2007 Molecular cloning, expression analyses and primary evolution studies of REV- and TB1-like genes in bamboo. Tree physiology 5 17545127
1996 Optimization study of Escherichia coli TB1 cell disruption for cytochrome b5 recovery in a small-scale bead mill. Biotechnology progress 5 8857189
2022 MiR-672-5p-Mediated Upregulation of REEP6 in Spinal Dorsal Horn Participates in Bortezomib-Induced Neuropathic Pain in Rats. Neurochemical research 4 36064821
2020 Expression and Function Studies of CYC/TB1-Like Genes in the Asymmetric Flower Canna (Cannaceae, Zingiberales). Frontiers in plant science 3 33343594
2019 Identification and Genomic Analysis of a Pathogenic Strain of Mycoplasma hyopneumoniae (TB1) Isolated from Tibetan Pigs. DNA and cell biology 3 31329463
2018 Generation and classification of transcriptomes in two Croomia species and molecular evolution of CYC/TB1 genes in Stemonaceae. Plant diversity 2 30740572
2015 Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Research 2 26973784
2020 Identification and expression profiling of HvMADS57 and HvD14 in a barley tb1 mutant. Journal of genetics 1 32482923
2007 Influence of oxygen defects on the crystal structure and magnetic properties of the (Tb1-xNax)MnO3-y (0<or=x<or=0.3) system. Inorganic chemistry 1 17472373
1996 Freeze/thawing and sonication of Escherichia coli TB1 cells for cytochrome b5 recovery. Bioseparation 1 8818263
2026 Clinical and genetic characterization of REEP6-associated retinopathy in a Japanese cohort. Japanese journal of ophthalmology 0 41553438
2026 WTAP mediated m6A methylation modulates retinal photoreceptor function via facilitating of REEP6, PDE6B and RDH12 translation. Science China. Life sciences 0 41796262
2025 Retinitis pigmentosa elicits neurodegeneration within the visual pathway in REEP6 knockout mice. Neural regeneration research 0 41017685