Affinage

RCN3

Reticulocalbin-3 · UniProt Q96D15

Length
328 aa
Mass
37.5 kDa
Annotated
2026-06-10
9 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RCN3 is a calcium-binding reticulocalbin of the ER lumen that functions as a stress-responsive regulator of fibroblast activation, epithelial injury responses, and TGF-β signaling (PMID:37710230, PMID:41664195). In fibroblasts, TGF-β1 induces RCN3, which then sustains the pathway through a positive feedback loop: RCN3 physically binds the methyltransferase EZH2 and sequesters it in the cytoplasm, relieving EZH2/H3K27me3 repression of TGFBR1 and thereby maintaining persistent TGFBR1 expression and TGF-β1 signaling that drives fibroblast activation in bleomycin-induced lung fibrosis (PMID:37710230). RCN3 also acts non-cell-autonomously: it is secreted from pulmonary epithelial cells via an N140-glycosylation–dependent ER–Golgi route, binds TGFβR1 on fibroblasts, and activates canonical Smad2/3 signaling, with intratracheal recombinant RCN3 alone sufficient to trigger pulmonary fibrosis and early RCN3 neutralization attenuating fibrotic remodeling (PMID:41664195). Within type II alveolar epithelial cells, RCN3 supports the injury-repair process and limits POVPC-induced ferroptosis by restraining lipid peroxidation and iron accumulation and preserving the GSH/GPX4/SLC7A11 axis (PMID:33531801, PMID:41881199). Its EF-hand domains mediate distinct partner interactions—domains 3–4 engage GRP78 and domains 5–6 engage MMP10—coupling RCN3 to calcium handling, ER stress, and metalloproteinase secretion (PMID:40849588, PMID:41966439).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2021 Medium

    Whether RCN3 in alveolar epithelium has a functional role in lung injury was unknown; cell-type-specific deletion established RCN3 in AECIIs as a participant in the injury-repair process.

    Evidence AECII-specific conditional Rcn3 knockout in a PPE-induced emphysema mouse model

    PMID:33531801

    Open questions at the time
    • Molecular mechanism by which RCN3 affects AECII injury was not defined
    • No interaction partners identified in this model
  2. 2023 Medium

    It was unclear how RCN3 sustains fibroblast activation; the work showed RCN3 sequesters EZH2 in the cytoplasm to derepress TGFBR1, defining a TGF-β1/RCN3 feedback loop.

    Evidence BioID and co-IP interaction assays, epigenetic (H3K27me3) analysis, and fibroblast-selective Rcn3 knockdown in bleomycin lung fibrosis

    PMID:37710230

    Open questions at the time
    • Structural basis of EZH2 binding not resolved
    • Whether cytoplasmic EZH2 sequestration occurs in other cell types untested
  3. 2024 Low

    The role of fibroblast RCN3 in the tumor immune microenvironment was unknown; an RCN3/PCSK6/STAT1 axis was proposed linking CAFs to macrophage polarization in gastric cancer.

    Evidence ChIP, expression assays, and macrophage M1/M2 polarization co-culture in gastric cancer

    PMID:39206893

    Open questions at the time
    • Single study without full mechanistic reconstitution
    • Direct molecular link from RCN3 to PCSK6 not established
    • Whether the axis operates in vivo not shown
  4. 2025 Low

    Partner interactions and upstream regulation of RCN3 in cancer were uncharacterized; EF-hand 3–4 binding to GRP78 (with ER stress and PI3K-AKT-mTOR activation) and RELB-driven RCN3 induction by TGF-β were reported.

    Evidence Domain-mapping interaction studies and pathway Western blotting in colorectal cancer; multi-omics and co-culture/xenograft for the RELB/RCN3 feedback loop

    PMID:40849588 PMID:41186513

    Open questions at the time
    • EF-hand 3–4/GRP78 interaction lacks explicit mutagenesis confirmation
    • RELB→RCN3 regulation not fully elaborated experimentally
    • Single lab per claim
  5. 2026 Medium

    Whether RCN3 acts intracellularly versus as a secreted ligand, and how it controls epithelial fate, were open; studies showed RCN3 limits ferroptosis in AECIIs and that glycosylation-dependent secreted RCN3 binds TGFβR1 to activate Smad2/3 and drive fibrosis, while EF-hand 5–6 binds MMP10 to promote metastasis.

    Evidence AECII-specific KO with AAV6 rescue and ferroptosis readouts; secretomics with N140-glycosylation mutagenesis, recombinant RCN3 and neutralizing antibody in vivo; co-IP domain mapping with lung metastasis model

    PMID:41664195 PMID:41881199 PMID:41966439

    Open questions at the time
    • Mechanism by which RCN3 restrains lipid peroxidation not molecularly defined
    • Receptor-level details of secreted RCN3/TGFβR1 binding not structurally resolved
    • EF-hand 5–6/MMP10 interaction from abstract without confirmed reconstitution

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RCN3's distinct EF-hand-mediated partner interactions, its calcium-binding activity, and its dual intracellular/secreted functions are integrated within a single mechanistic framework remains unresolved.
  • No structural model of RCN3 EF-hand engagement of distinct partners
  • Quantitative role of calcium binding in each function not established
  • Determinants directing RCN3 to intracellular vs secreted roles unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0048018 receptor ligand activity 1
Localization
GO:0005783 endoplasmic reticulum 2 GO:0005576 extracellular region 1 GO:0005829 cytosol 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-5357801 Programmed Cell Death 1

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 RCN3 promotes fibroblast activation by maintaining persistent TGFβ1 signaling through a positive feedback loop: TGFβ1 upregulates RCN3, which then physically interacts with EZH2 (an epigenetic methyltransferase) and sequesters it in the cytoplasm, thereby releasing EZH2-H3K27me3 epigenetic repression of TGFBR1, leading to persistent TGFBR1 expression and sustained TGFβ1 signaling. BioID protein interaction assay, co-immunoprecipitation, epigenetic analysis, fibroblast-selective Rcn3 knockdown mouse model with bleomycin-induced lung fibrosis Respiratory research Medium 37710230
2025 RCN3's EF-hand domains 3 and 4 interact with GRP78, promoting GRP78 translocation to the cellular membrane, which induces ER stress through elevated intracellular calcium levels and activates the PI3K-AKT-mTOR-S6 signaling pathway by enhancing phosphorylation of key proteins in colorectal cancer cells. Functional assays (proliferation, migration, invasion in vitro and in vivo), Western blotting for pathway phosphorylation, domain-mapping interaction studies Oncogene Low 40849588
2021 Selective ablation of Rcn3 in type II alveolar epithelial cells (AECIIs) significantly alleviated PPE-induced emphysema in mice, establishing that Rcn3 in AECIIs plays a functional role in the lung injury-repair process. Conditional knockout (CKO) mice with AECII-specific Rcn3 deletion, PPE-induced emphysema model, Western blot, IHC, qPCR International journal of chronic obstructive pulmonary disease Medium 33531801
2024 In gastric cancer, RCN3 protein in cancer-associated fibroblasts regulates PCSK6 expression, and PCSK6 in turn regulates macrophage polarization through STAT1, defining an RCN3/PCSK6/STAT1 axis linking CAFs to immune modulation. Western blot, qPCR, chromatin immunoprecipitation (ChIP), macrophage M1/M2 polarization marker detection, cellular co-culture experiments Frontiers in bioscience (Landmark edition) Low 39206893
2026 RCN3 interacts with MMP10 through its EF-hand domains 5–6, promoting secretion of MMP10 and activating the PI3K/Akt pathway, thereby facilitating renal cell carcinoma lung metastasis; promoter hypomethylation drives RCN3 upregulation in metastatic RCC. Co-immunoprecipitation/interaction assays with domain mapping (EF-hand 5–6), in vitro functional assays, in vivo lung metastasis model, bisulfite sequencing, transcriptome sequencing Cellular signalling Low 41966439
2026 RCN3 functions as a stress-responsive intracellular gatekeeper in pulmonary epithelial cells limiting POVPC-induced ferroptosis: RCN3 knockdown aggravated lipid peroxidation, iron accumulation, and GSH/GPX4/SLC7A11 depletion, while RCN3 overexpression attenuated these effects; AECII-specific RCN3 deletion sensitized mice to POVPC-induced ALI, and AAV6-mediated AECII-targeted RCN3 delivery alleviated injury. AECII-specific RCN3 knockout mice, AAV6-RCN3 overexpression, in vitro ferroptosis assays (iron, lipid peroxidation, GSH/GPX4/SLC7A11 measurement), ferrostatin-1 and deferoxamine rescue Free radical biology & medicine Medium 41881199
2026 Secreted RCN3 acts as an early epithelial paracrine mediator activating fibroblasts: RCN3 is secreted via an N140-glycosylation–dependent ER-Golgi pathway, binds TGFβR1 on fibroblasts, and activates canonical Smad2/3 signaling; RCN3 also upregulates TGFβ1 and TGFβR1/2 in a Smad3-dependent manner. Intratracheal exogenous RCN3 alone was sufficient to trigger pulmonary fibrosis in vivo, and early-phase RCN3 neutralization after LPS-ALI attenuated fibrotic remodeling. Secretomics of LPS-treated pulmonary epithelial cells, N-glycosylation site mutagenesis (N140), recombinant RCN3 intratracheal administration, neutralizing antibody treatment in vivo, Smad2/3 phosphorylation assays, clinical BALF measurements Cell communication and signaling : CCS Medium 41664195
2025 In colorectal cancer, TGF-β induces RCN3 expression through RELB, and RCN3-positive CAFs exhibit hyper-activated TGF-β signaling, enhance epithelial-mesenchymal transition, invasion, and M2-like macrophage polarization in coculture and xenograft models, creating a positive TGF-β/RCN3 feedback loop. Multi-omics profiling (bulk/single-cell/spatial transcriptomics, proteomics), in vitro co-culture, xenograft in vivo models, machine-learning signature with SHAP interpretation, in vitro/in vivo validation International journal of surgery (London, England) Low 41186513

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2023 TGFβ1-RCN3-TGFBR1 loop facilitates pulmonary fibrosis by orchestrating fibroblast activation. Respiratory research 22 37710230
2025 RCN3 functions as a tumor promoter in colorectal cancer by modulating the GRP78-PI3K-AKT signaling pathway. Oncogene 4 40849588
2022 An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript. Diabetes 4 34753797
2021 Rcn3 Suppression Was Responsible for Partial Relief of Emphysema as Shown by Specific Type II Alveolar Epithelial Cell Rcn3 CKO Mouse Model. International journal of chronic obstructive pulmonary disease 4 33531801
2024 Cancer-Associated Fibroblasts in Gastric Cancer Regulate Macrophage Polarization through RCN3 Pathway. Frontiers in bioscience (Landmark edition) 3 39206893
2026 Secreted RCN3 acts as an early epithelial-fibroblast mediator via TGFβR1-Smad signaling in post-ALI pulmonary fibrosis. Cell communication and signaling : CCS 0 41664195
2026 Endogenous oxidized phospholipid POVPC triggers pulmonary epithelial ferroptosis in acute lung injury and is restrained by RCN3. Free radical biology & medicine 0 41881199
2026 Analysis of paired primary-metastatic renal cancer lesions reveals RCN3-MMP10 axis facilitates lung metastasis. Cellular signalling 0 41966439
2025 Identification of RCN3-positive cancer-associated fibroblasts as novel drivers of colorectal cancer through a TGF-β pathway-based risk signature. International journal of surgery (London, England) 0 41186513

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