Affinage

RBSN

Rabenosyn-5 · UniProt Q9H1K0

Length
784 aa
Mass
88.9 kDa
Annotated
2026-06-10
16 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Rabenosyn-5 (RBSN/ZFYVE20) is a conserved multi-domain endosomal protein that organizes early endocytic trafficking as a Rab5 effector, bridging Rab5 to the Sec1/Munc18 protein Vps45, which in turn targets the syntaxin SNARE machinery to drive vesicle fusion and early endosome formation (PMID:18685079). Membrane targeting depends on its FYVE domain binding phosphatidylinositol 3-phosphate (PI3P): FYVE-domain variants abolish PI3P binding and prevent translocation to early endosomes (PMID:35652444). Beyond early endosome biogenesis, RBSN engages the HOPS and CORVET tethering complexes through their shared subunit Vps18, an interaction required for endosomal transport and beta1-integrin recycling but dispensable for autophagy (PMID:33781757). RBSN supports distinct, separable cargo fates: separation-of-function alleles cause accumulation of cargo destined for lysosomal degradation while leaving endosomal recycling intact, indicating it gates endosomal maturation independently of recycling (PMID:35652444). In humans, RBSN acts downstream of PI3K(III) in endocytic regulation, and a homozygous missense mutation reduces transferrin uptake, impairs proliferation, and produces cytoskeletal and lysosomal abnormalities, establishing a disease-associated defect in the early endocytic pathway (PMID:25233840, PMID:19798413). RBSN also functions as a CDC42 GTPase-activating protein that suppresses filopodia formation and lung cancer cell migration, an inhibitory activity negated by Akt phosphorylation at Thr253 (PMID:39075137). In Drosophila, this trafficking activity underlies tissue-level outcomes, including epithelial polarity maintenance, planar cell polarity, and pole plasm assembly through endosomal cycling that remodels the actin cytoskeleton (PMID:18685079, PMID:20534670, PMID:18272590).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2008 High

    Established the core molecular logic of RBSN as a Rab5 effector that physically bridges Rab5 to the fusion machinery, answering how early endosomes are formed from incoming vesicles.

    Evidence Genetic null mutants, ultrastructural EM, co-immunoprecipitation and localization in Drosophila

    PMID:18685079

    Open questions at the time
    • Structural basis of the Rab5-Rbsn-5-Vps45 bridge not resolved
    • Mammalian conservation of the bridging mechanism not tested here
  2. 2008 High

    Linked RBSN-dependent endosomal cycling to cytoskeletal organization, showing it acts downstream of Oskar to reorganize F-actin and anchor pole plasm.

    Evidence Genetic loss-of-function and epistasis with imaging in Drosophila oocytes

    PMID:18272590

    Open questions at the time
    • Direct molecular link between endosomal cycling and actin remodeling not defined
    • Cargo mediating actin effects not identified
  3. 2009 Medium

    Defined RBSN as a cargo-selective effector downstream of PI3K(III), regulating only a subset of membrane proteins.

    Evidence rbsn-5 mutant and Vps15 RNAi with cargo-specific immunofluorescence in Drosophila wing cells

    PMID:19798413

    Open questions at the time
    • Basis of cargo selectivity unknown
    • Single tissue context
  4. 2010 High

    Connected RBSN-mediated apical endocytosis to planar cell polarity, showing it is recruited to cell boundaries and required for PCP protein trafficking.

    Evidence Loss-of-function genetics, localization and live imaging in Drosophila wing epithelium

    PMID:20534670

    Open questions at the time
    • Mechanism of Fmi-dependent redistribution unresolved
    • Direct interaction with PCP machinery not shown
  5. 2011 Medium

    Refined the pole plasm model by placing RBSN-generated vesicles upstream of Mon2-directed actin nucleator scaffolding.

    Evidence Genetic loss-of-function and epistasis in Drosophila oocytes

    PMID:21922042

    Open questions at the time
    • Vesicle identity and composition not characterized
    • Follow-up/review corroboration rather than new mechanism
  6. 2014 Medium

    Provided the first human disease link, demonstrating a missense mutation causes a functional early-endocytic defect rescuable by wild-type allele.

    Evidence Patient fibroblast transferrin uptake, wild-type rescue transfection, exome sequencing

    PMID:25233840

    Open questions at the time
    • Molecular mechanism by which p.Gly425Arg impairs function unknown
    • Single patient/family
  7. 2021 Medium

    Identified the HOPS/CORVET tethering complexes as RBSN partners via Vps18, distinguishing endosomal transport from autophagy functions.

    Evidence Co-IP, interaction mapping, and genetic rescue in Drosophila

    PMID:33781757

    Open questions at the time
    • Whether RBSN-Vps18 binding is conserved in human cells not tested here
    • Structural detail beyond the 773-854 region absent
  8. 2022 High

    Resolved the membrane-targeting requirement and separated cargo degradation from recycling, defining FYVE/PI3P-dependent endosomal maturation as a distinct RBSN function.

    Evidence PI3P binding assays, patient fibroblast localization and cargo trafficking with separation-of-function alleles

    PMID:35652444

    Open questions at the time
    • How degradation cargo is selectively gated remains undefined
    • Recycling pathway components engaged by RBSN not enumerated
  9. 2024 Medium

    Uncovered a non-trafficking activity of RBSN as a CDC42 GAP regulated by Akt phosphorylation, linking it to cytoskeletal dynamics and cancer cell motility.

    Evidence Co-IP, GAP activity assay, Thr253 phosphosite mutagenesis, filopodia and migration assays in lung cancer cells

    PMID:39075137

    Open questions at the time
    • Relationship between GAP activity and endosomal function unclear
    • Structural basis of GAP catalysis not defined
    • Single cancer cell context

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RBSN coordinates its endosomal tethering/fusion role with its CDC42 GAP activity, and how these are integrated by upstream signaling, remains unresolved.
  • No structural model integrating FYVE, Rab5/Vps45, Vps18, and CDC42 GAP functions
  • Functional crosstalk between trafficking and GAP roles untested
  • Tissue-specific consequences of each activity not delineated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2 GO:0008289 lipid binding 1 GO:0060090 molecular adaptor activity 1
Localization
GO:0005768 endosome 2 GO:0005886 plasma membrane 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 3 R-HSA-162582 Signal Transduction 1

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2008 Drosophila Rabenosyn-5 (Rbsn-5) acts as a Rab5 effector that bridges an interaction between Rab5 and the Sec1/Munc18-family protein Vps45, which in turn targets the syntaxin Avalanche (Avl); all four proteins localize specifically to early endosomes and are required for vesicle fusion to form early endosomes, with loss leading to neoplastic tumor formation due to loss of epithelial polarity. Genetic null mutants, ultrastructural analysis, co-immunoprecipitation, localization studies in Drosophila Molecular biology of the cell High 18685079
2008 Drosophila Rbsn-5 is required for maintaining microtubule polarity in oocytes and for pole plasm assembly; long Osk recruits endosomal proteins including Rbsn-5 and stimulates endocytosis, and in rbsn-5 mutant oocytes ectopic Osk induces aberrant F-actin aggregates, indicating Rbsn-5 acts downstream of Osk to promote endosomal cycling which reorganizes F-actin to anchor pole plasm components to the cortex. Genetic loss-of-function (rbsn-5 null mutants), immunofluorescence, live imaging, epistasis analysis in Drosophila oocytes Development (Cambridge, England) High 18272590
2010 Rbsn-5 regulates endocytosis at the apical side of the Drosophila wing epithelium and is required for planar cell polarity (PCP); during planar polarization, Rbsn-5 is recruited to apical cell boundaries and redistributes along the proximodistal axis in an Fmi-dependent manner; loss of Rbsn-5 causes intracellular accumulation of PCP protein Fmi and PCP defects including aberrant cell packing, hair orientation and formation. Loss-of-function genetics, immunofluorescence, live imaging, localization analysis in Drosophila wing epithelium Development (Cambridge, England) High 20534670
2009 In Drosophila wing primordial cells, Rbsn-5 mediates PI3K(III)-dependent regulation of beta-integrin and Fasciclin III (Fas III) localization at distinct membrane domains, but does not mediate PI3K(III)-dependent regulation of DE-cadherin and Flamingo, indicating Rbsn-5 acts downstream of PI3K(III) for only a subset of cargo. Loss-of-function genetics (rbsn-5 mutant), RNAi knockdown of Vps15, immunofluorescence in Drosophila wing cells PloS one Medium 19798413
2011 Rbsn-5 (Rab5/Rbsn-5-dependent endocytic pathway) and Mon2 act downstream of long Osk in Drosophila pole plasm assembly; Rbsn-5 promotes formation of specialized vesicles in response to long Osk, and Mon2 acts on these vesicles as a scaffold to instruct actin nucleators Cappuccino and Spire to remodel the actin cytoskeleton for anchoring pole plasm components to the cortex. Genetic loss-of-function, epistasis analysis, immunofluorescence in Drosophila oocytes Bioarchitecture Medium 21922042
2014 A homozygous missense mutation (p.Gly425Arg) in human RBSN (ZFYVE20) results in expression and localization of Rbsn-5 in wild-type manner but causes a 50% decrease in transferrin accumulation (correctable by wild-type allele transfection), impaired cell proliferation, and cytoskeletal and lysosomal abnormalities, demonstrating a functional defect in the early endocytic pathway. Patient fibroblast studies, transferrin uptake assay, wild-type rescue transfection, whole exome sequencing confirmed by Sanger sequencing Orphanet journal of rare diseases Medium 25233840
2022 Two RBSN missense variants (p.Arg180Gly and p.Gly183Arg) in the FYVE domain abrogate binding to phosphatidylinositol 3-phosphate (PI3P) and prevent RBSN translocation to early endosomes; mutant p.Gly183Arg patient fibroblasts show accumulation of cargo tagged for lysosomal degradation while endosomal recycling is unaltered, indicating these are separation-of-function alleles causing a delay in endosomal maturation without affecting recycling. Exome sequencing, patient fibroblast cellular/biochemical studies, PI3P binding assays, cargo trafficking assays, subcellular localization Human molecular genetics High 35652444
2021 Drosophila Rabenosyn-5 (Rbsn) binds to the HOPS and CORVET complexes primarily via their shared subunit Vps18, with the interaction mapping to the 773-854 region of Vps18; this Rbsn-Vps18 interaction is required for endosomal transport (but dispensable for autophagy), and Vps18 also participates in beta1 integrin recycling through binding to Rbsn and Vps45. Co-immunoprecipitation, interaction mapping, genetic rescue experiments in Drosophila Journal of molecular biology Medium 33781757
2024 Human Rbsn interacts with CDC42 and functions as a GTPase activating protein (GAP), thereby inhibiting CDC42 activity and suppressing filopodia formation and lung cancer cell migration/invasion; Akt phosphorylates Rbsn at Thr253, and this phosphorylation negates the inhibitory effect of Rbsn on CDC42 activity. Co-immunoprecipitation, GAP activity assay, phosphorylation site mutagenesis, filopodia formation assay, knockdown/overexpression in lung cancer cells Cancer gene therapy Medium 39075137

Source papers

Stage 0 corpus · 16 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 The endocytic pathway acts downstream of Oskar in Drosophila germ plasm assembly. Development (Cambridge, England) 139 18272590
2016 Visualization of self-delivering hydrophobically modified siRNA cellular internalization. Nucleic acids research 105 27899655
2008 Regulation of early endosomal entry by the Drosophila tumor suppressors Rabenosyn and Vps45. Molecular biology of the cell 75 18685079
2010 A novel function for the Rab5 effector Rabenosyn-5 in planar cell polarity. Development (Cambridge, England) 35 20534670
2014 Single point mutation in Rabenosyn-5 in a female with intractable seizures and evidence of defective endocytotic trafficking. Orphanet journal of rare diseases 23 25233840
2009 Membrane protein location-dependent regulation by PI3K (III) and rabenosyn-5 in Drosophila wing cells. PloS one 18 19798413
2000 Proinflammatory cytokine expression of IL-1beta and TNF-alpha by human osteoblast-like MG-63 cells upon exposure to silicon nitride in vitro. Journal of biomedical materials research 16 10644962
2014 Clathrin heavy chain plays multiple roles in polarizing the Drosophila oocyte downstream of Bic-D. Development (Cambridge, England) 15 24718986
2011 Oskar-induced endocytic activation and actin remodeling for anchorage of the Drosophila germ plasm. Bioarchitecture 14 21922042
2015 Programmed cell death 6 interacting protein (PDCD6IP) and Rabenosyn-5 (ZFYVE20) are potential urinary biomarkers for upper gastrointestinal cancer. Proteomics. Clinical applications 11 25644331
2021 Identification of New Interactions between Endolysosomal Tethering Factors. Journal of molecular biology 5 33781757
2024 Rabenosyn-5 suppresses non-small cell lung cancer metastasis via inhibiting CDC42 activity. Cancer gene therapy 3 39075137
2025 Combined Oxaliplatin with 5-Fluorouracil for Effective Chemotherapy Against Gastric Cancer in Animal Model. International journal of nanomedicine 2 40546800
2024 Silencing GDI2 inhibits proliferation, migration and invasion of colorectal cancer through activation of p53 signaling pathway. Heliyon 1 39323841
2025 Identifying sepsis susceptibility genes in post-surgical patients using an artificial intelligence approach. Frontiers in medicine 0 41473159
2022 RABENOSYN separation-of-function mutations uncouple endosomal recycling from lysosomal degradation, causing a distinct Mendelian disorder. Human molecular genetics 0 35652444

Missed literature

Know a paper Affinage missed for RBSN? Flag it for the maintainers and the community.

No submissions yet.