Affinage

RABGGTB

Geranylgeranyl transferase type-2 subunit beta · UniProt P53611

Length
331 aa
Mass
36.9 kDa
Annotated
2026-06-10
17 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/4 claims corpus-supported (75%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RABGGTB is the catalytic β-subunit of geranylgeranyltransferase complexes that prenylate substrate proteins to direct their membrane localization and downstream activity (PMID:31209342, PMID:38042502). Beyond its canonical role in the Rab geranylgeranyltransferase (GGTase2/RabGGTase), RABGGTB partners with the orphan α-subunit PTAR1 to form a distinct prenyltransferase, GGTase3, that geranylgeranylates FBXL2 at its CaaX motif; crystallography of the full-length GGTase3–FBXL2–SKP1 assembly shows that substrate specificity is conferred by an extensive multivalent interface between the FBXL2 leucine-rich repeat domain and PTAR1, while RABGGTB supplies the catalytic prenyl-transfer activity, and this modification is required for FBXL2 membrane localization and polyubiquitylation of membrane-anchored proteins (PMID:31209342). In autophagy, RABGGTB-driven geranylgeranylation of Rab7 promotes autophagosome–lysosome fusion and clearance of misfolded protein aggregates: RABGGTB overexpression reduced abnormal SOD1 aggregation in ALS cell models and, delivered by AAV9 to SOD1G93A mouse motoneurons, delayed disease onset, extended survival, and lowered misfolded SOD1 accumulation and glial overactivation (PMID:38042502, PMID:36967828). The GGTase3 complex is also expressed in pancreatic islets and β-cells, where it supports glucose-stimulated insulin secretion, potentially via geranylgeranylation of the synaptobrevin homolog Ykt6 (PMID:40598917).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 1995 Low

    Established the basic expression behavior of the Rab GGTase β-subunit, showing it is ubiquitously expressed and transcriptionally responsive to retinoid signaling, the first hint that its abundance is regulated.

    Evidence Northern blot, in situ hybridization, and retinoic acid treatment of P19 embryonal carcinoma cells

    PMID:7544156

    Open questions at the time
    • No functional or catalytic mechanism dissected
    • Retinoic acid induction mechanism (direct vs indirect) not defined
  2. 1997 Low

    Addressed how RABGGTB levels are controlled post-transcriptionally, showing the mRNA is stabilized upon translation inhibition and implicating a labile repressor of transcript stability.

    Evidence Northern blot with actinomycin D chase and cycloheximide treatment in P19 cells

    PMID:9031634

    Open questions at the time
    • The proposed labile repressor protein was not identified
    • Indirect pharmacological inference only
  3. 2008 Medium

    Identified a candidate physical partner, showing the chondrolectin cytoplasmic domain binds RABGGTB, raising the possibility of substrate or regulatory connections beyond Rab proteins.

    Evidence Sos recruitment system yeast two-hybrid screen confirmed by in vitro pulldown and co-immunoprecipitation

    PMID:18161010

    Open questions at the time
    • No functional consequence of the interaction established
    • Whether chondrolectin is a prenylation substrate untested
    • Single lab
  4. 2019 High

    Defined a new enzymatic identity for RABGGTB, showing it pairs with PTAR1 to form GGTase3, which geranylgeranylates FBXL2 to drive its membrane localization and membrane-protein polyubiquitylation; the structure explained how substrate specificity arises from a PTAR1–FBXL2 interface rather than from the catalytic subunit.

    Evidence Co-IP, in vitro prenylation, crystal structure of GGTase3–FBXL2–SKP1, interface/active-site mutagenesis, membrane fractionation, and ubiquitylation assays

    PMID:31209342

    Open questions at the time
    • Full substrate repertoire of GGTase3 beyond FBXL2 not enumerated
    • Physiological contexts requiring GGTase3 vs GGTase2 not mapped
    • Regulation of α-subunit partner choice unknown
  5. 2023 Medium

    Connected RABGGTB catalytic activity to neurodegenerative proteostasis, showing that boosting RABGGTB enhances Rab7 geranylgeranylation, autophagosome–lysosome fusion, and clearance of misfolded SOD1 in both cell and mouse ALS models.

    Evidence Lentiviral overexpression in NSC34-hSOD1G93A and TDP-43 cell models with autophagy flux analysis, and AAV9 intrathecal overexpression in SOD1G93A mice with behavioral and histological readouts

    PMID:36967828 PMID:38042502

    Open questions at the time
    • Rab7 prenylation step not confirmed by in vitro reconstitution or epistasis
    • Single lab without independent replication of the in vivo result
    • Whether effect generalizes beyond SOD1 ALS unclear
  6. 2025 Medium

    Extended GGTase3 function to endocrine physiology, implicating the RABGGTB-containing complex in glucose-stimulated insulin secretion, potentially through geranylgeranylation of Ykt6.

    Evidence Western blotting in human/mouse islets and INS-1 832/13 β-cells, siRNA knockdown of PTAR1, and insulin ELISA secretion assays

    PMID:40598917

    Open questions at the time
    • Only the α-subunit PTAR1 was knocked down; RABGGTB role inferred from complex membership
    • Ykt6 prenylation in β-cells not directly demonstrated
    • Single lab, single study

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RABGGTB partitions between its GGTase2 (RABGGTA) and GGTase3 (PTAR1) complexes, and what governs subunit selection across cell types and physiological demands, remains unresolved.
  • No quantitative measure of RABGGTB distribution among complexes
  • Regulatory inputs controlling α-subunit choice unknown
  • Complete substrate maps of each complex incomplete

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 2 GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005829 cytosol 1
Pathway
R-HSA-9612973 Autophagy 2 R-HSA-392499 Metabolism of proteins 1
Complex memberships
GGTase3 (RABGGTB-PTAR1)Rab geranylgeranyltransferase (GGTase2/RabGGTase)

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 RABGGTB (the catalytic β-subunit of GGTase2/RabGGTase) forms a novel heterodimeric prenyltransferase complex with the orphan α-subunit PTAR1, named GGTase3. This complex specifically geranylgeranylates FBXL2 at its CaaX motif, enabling FBXL2 membrane localization where it mediates polyubiquitylation of membrane-anchored proteins. Crystal structure of full-length GGTase3-FBXL2-SKP1 reveals that the leucine-rich repeat domain of FBXL2 forms an extensive multivalent interface with PTAR1, providing the structural basis for substrate-enzyme specificity that distinguishes GGTase3 from GGTase1. Co-immunoprecipitation, in vitro prenylation assay, crystal structure (X-ray crystallography), active-site and interface mutagenesis, membrane fractionation, ubiquitylation assay Nature structural & molecular biology High 31209342
2008 The cytoplasmic domain of mouse chondrolectin (Chodl) physically interacts with RABGGTB (Rab geranylgeranyl transferase β-subunit), as identified by a Sos recruitment system (SRS) yeast two-hybrid screen and confirmed by in vitro transcription/translation pulldown and co-immunoprecipitation. SRS yeast two-hybrid screen, in vitro transcription/translation pulldown, co-immunoprecipitation Cellular & molecular biology letters Medium 18161010
2023 Overexpression of RABGGTB in NSC34-hSOD1G93A and TDP-43 ALS cell models improved autophagosome-lysosome fusion and reduced abnormal SOD1 aggregation, acting via enhanced geranylgeranylation of Rab7, which is required for late-stage autophagy progression. Lentiviral overexpression in ALS cell lines, immunofluorescence, cell proliferation assay, autophagy flux analysis Brain research bulletin Medium 38042502
2023 Intrathecal AAV9-mediated overexpression of RABGGTB in SOD1G93A mouse spinal cord motoneurons delayed disease onset and extended survival, and was associated with decreased misfolded SOD1 accumulation and reduced glial overactivation in lumbar spinal cord, consistent with RABGGTB-driven Rab7 prenylation promoting autophagic clearance. AAV9 intrathecal injection in SOD1G93A mice, immunofluorescence, behavioral assays (rotarod, footprint, neurological deficit scoring), body weight monitoring Frontiers in aging neuroscience Medium 36967828
2025 Both subunits of GGTase3 (PTAR1 and RABGGTB) are expressed in human islets, mouse islets, and INS-1 832/13 β-cells. siRNA-mediated knockdown of PTAR1 (the α-subunit that partners with RABGGTB) reduced glucose-stimulated insulin secretion by ~60% and KCl-induced insulin secretion by ~69%, implicating the GGTase3 complex (which requires RABGGTB) in insulin secretion, potentially via geranylgeranylation of the synaptobrevin homolog Ykt6. Western blotting, siRNA knockdown of PTAR1, insulin ELISA, INS-1 832/13 cell transfection Cellular physiology and biochemistry Medium 40598917
1995 The mouse Rab geranylgeranyl transferase β-subunit (Rabggtb) is ubiquitously expressed in adult tissues, and its expression is specifically induced by retinoic acid in the P19 mouse embryonal carcinoma cell line, indicating transcriptional responsiveness to retinoid signaling. Northern blot, in situ hybridization, retinoic acid treatment of P19 cells, chromosomal mapping Cell growth & differentiation Low 7544156
1997 The Rabggtb mRNA half-life is dramatically extended (from ~8 h to >12 h) by cycloheximide treatment in P19 cells, demonstrating that expression of the Rab GGTase β-subunit is subject to post-transcriptional regulation, likely through stabilization of its transcript by a labile repressor protein. Northern blot, actinomycin D chase, cycloheximide treatment, half-life measurement Gene Low 9031634

Source papers

Stage 0 corpus · 17 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2019 GGTase3 is a newly identified geranylgeranyltransferase targeting a ubiquitin ligase. Nature structural & molecular biology 97 31209342
2008 Genes associated with the tumour microenvironment are differentially expressed in cured versus primary chemotherapy-refractory diffuse large B-cell lymphoma. British journal of haematology 34 18419622
2018 Assessment of Protein Prenylation Pathway in Multiple Sclerosis Patients. Journal of molecular neuroscience : MN 10 29574663
2021 Expression of Rab Prenylation Pathway Genes and Relation to Disease Progression in Choroideremia. Translational vision science & technology 9 34254989
2023 Protective effects of intrathecal injection of AAV9-RabGGTB-GFP+ in SOD1G93A mice. Frontiers in aging neuroscience 8 36967828
2008 The cytoplasmic domain of chondrolectin interacts with the beta-subunit of Rab geranylgeranyl transferase. Cellular & molecular biology letters 7 18161010
1995 Studies of cloning, chromosomal mapping, and embryonic expression of the mouse Rab geranylgeranyl transferase beta subunit. Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 7 7544156
1997 Studies of the mouse Rab geranylgeranyl transferase beta subunit: gene structure, expression and regulation. Gene 6 9031634
2020 ChIP-Seq-Based Approach in Mouse Enteric Precursor Cells Reveals New Potential Genes with a Role in Enteric Nervous System Development and Hirschsprung Disease. International journal of molecular sciences 4 33260622
2025 Exploring genetic and epigenetic markers for predicting or monitoring response to cognitive-behavioral therapy in obsessive-compulsive disorder: A systematic review. Neuroscience and biobehavioral reviews 3 40324706
2023 RABGGTB plays a critical role in ALS pathogenesis. Brain research bulletin 3 38042502
2025 Genome-wide DNA methylation profiles in the raphe nuclei of patients with autism spectrum disorder. Psychiatry and clinical neurosciences 2 40272067
2023 Rab Geranylgeranyltransferase Subunit Beta as a Potential Indicator to Assess the Progression of Amyotrophic Lateral Sclerosis. Brain sciences 2 38002490
2025 Significant upregulation of prenyltransferase-related genes in neuromyelitis optica: Diagnostic potential and clinical correlations. Multiple sclerosis and related disorders 1 40712510
2023 Sex-based Dysregulation of Inflammation-related Genes in Periodontitis. International journal of molecular and cellular medicine 1 38751653
2025 Novel Roles for Geranylgeranyl Transferase-III (GGTase-III) in Insulin Secretion. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 0 40598917
2024 Assessment of Rab geranylgeranyltransferase subunit beta in amyotrophic lateral sclerosis. Frontiers in neurology 0 39224887

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