| 2011 |
RAB12 regulates constitutive degradation of transferrin receptor (TfR) via a pathway from recycling endosomes to lysosomes, independently of the conventional EGFR degradation pathway. Constitutively active RAB12 reduced TfR protein levels; siRNA knockdown of RAB12 or its upstream activator DENND3 increased TfR levels. Knockdown had no effect on EGFR degradation. |
siRNA knockdown, constitutively active mutant overexpression, colocalization with lysosomes, sequential screening of 60 Rab isoforms |
Traffic |
High |
21718402 22279614
|
| 2014 |
DENND3 functions as the physiological guanine nucleotide exchange factor (GEF) for RAB12 in mouse embryonic fibroblasts. DENND3 knockdown phenocopied RAB12 knockdown (increased PAT4 levels, increased intracellular amino acids); DENND3 overexpression reduced mTORC1 activity and promoted autophagy in a RAB12-dependent manner, placing DENND3 upstream of RAB12 in controlling PAT4 trafficking from recycling endosomes to lysosomes. |
siRNA knockdown, overexpression, epistasis (Rab12-dependent rescue), amino acid concentration measurements, mTORC1 activity assay |
Journal of Biological Chemistry |
High |
24719330
|
| 2013 |
RAB12 physically complexes with the autophagy receptor OPTN, and the M98K-OPTN variant shows enhanced colocalization with RAB12. RAB12 is present in autophagosomes, and knockdown of Rab12 increased TfR levels and reduced M98K-OPTN-induced autolysosomes formation and cell death in retinal ganglion cells (RGC-5). |
Co-immunoprecipitation, siRNA knockdown, colocalization (fluorescence microscopy), autophagosome formation assay |
Autophagy |
Medium |
23357852
|
| 2016 |
RAB12 is activated in a stimulus-dependent manner in mast cells and promotes microtubule-dependent retrograde transport of secretory granules (SGs) via interaction with the RILP-dynein complex. RILP was identified as a novel RAB12 effector. RAB12 negatively regulates mast cell degranulation. |
Pulldown assay (RILP as effector), live-cell imaging of SG transport, knockdown/overexpression with degranulation readout, colocalization |
Journal of Immunology |
High |
26740112
|
| 2017 |
LRRK2 phosphorylates human RAB12 at Ser106 in a kinase-dependent manner. This was confirmed in HEK293 cells using the selective LRRK2 inhibitor Lu AF58786 in a phosphoproteomic study, and the phosphorylation was reduced by two distinct LRRK2 inhibitors. |
Phosphoproteomics (SILAC), LRRK2 inhibitor treatment (Lu AF58786 and second inhibitor), immunoblot validation in HEK293 and human PBMCs |
Scientific Reports |
High |
28860483
|
| 2017 |
DENND3 GEF activity toward RAB12 is regulated through an intramolecular interaction controlled by tyrosine 940, demonstrated by size-exclusion chromatography, FRET, pulldown, and in vitro GEF assays. |
Size-exclusion chromatography, FRET, pulldown assay, in vitro GEF assay, point mutagenesis (Y940) |
Journal of Biological Chemistry |
High |
28249939
|
| 2014 |
RAB12 is required for efficient retrograde transport of Shiga toxin from early uptake carriers to the trans-Golgi network. RAB12 localizes to Shiga toxin-induced plasma membrane invaginations (clathrin-independent uptake carriers), and RAB12 depletion reduced toxin reaching TGN membranes and partially protected cells against intoxication. Only TGN46 and CI-M6PR steady-state localization was additionally affected. |
SILAC/quantitative mass spectrometry, fluorescence microscopy (GFP-RAB12 colocalization), quantitative biochemical toxin transport assay, siRNA knockdown |
Traffic |
Medium |
24703428
|
| 2018 |
DENND3 contains a PHenn domain with a pleckstrin homology subdomain that binds actin through positively charged residues, and this domain mediates an intramolecular interaction with the DENN domain of DENND3. Both actin binding and DENN domain interaction are required for DENND3 function in autophagy (and thus for RAB12 activation). |
Structural domain identification, NMR/crystal analysis (structural), pulldown assay, mutational analysis blocking DENN or actin binding, autophagy functional assay |
Journal of Biological Chemistry |
Medium |
29352104
|
| 2021 |
RAB12 interacts with RILP, RILP-L1, and RILP-L2 independently of each other. Lysine-71 in mouse RAB12 is critical for interaction with RILP-L1 and RILP-L2 but dispensable for RILP binding. A structural model of the RAB12-RILP complex proposes a RILP homodimer interacting with a single active RAB12 molecule via switch I and switch II regions with RILP's RHD domain and C-terminal threonine. Mutational analyses of RILP RHD confirmed its role in secretory granule transport regulation. |
Pulldown assay, molecular dynamics simulation, mutational analysis, peptide inhibition assay |
Scientific Reports |
Medium |
33986343
|
| 2023 |
RAB12 is a critical activator of LRRK2 kinase for Rab phosphorylation. Knockout of RAB12 markedly decreased phosphoRab10 levels across multiple cell types and knockout mouse tissues in a LRRK2-dependent and PPM1H-reversible manner. AlphaFold modeling revealed RAB12 binds a novel site in the LRRK2 Armadillo domain; residues at this site influence phosphoRab10 and phosphoRab12 levels distinctly from RAB29-mediated LRRK2 activation. RAB12-driven activation did not require RAB12's own phosphorylation. |
CRISPR genome-wide screen (flow cytometry for phosphoRab10), RAB12 knockout in multiple cell types and tissues, AlphaFold structural modeling with mutational validation, PPM1H phosphatase epistasis |
eLife |
High |
37874635
|
| 2023 |
RAB12 is recruited to damaged lysosomes and facilitates local LRRK2-dependent phosphorylation of RAB10 (pT73) at the lysosome. PD-linked LRRK2 variants (R1441G, VPS35 D620N) increased LRRK2 recruitment to lysosomes and elevated lysosomal pT73-Rab10. This defines a conserved mechanism by which RAB12 responds to lysosomal damage to activate LRRK2 locally. |
siRNA screen, lysosome immunopurification, imaging, immunoblot |
eLife |
High |
37874617
|
| 2023 |
Pathogenic LRRK2 causes perinuclear lysosomal clustering via RAB12 phosphorylation at Ser106; knockout of RAB12 or its effector RILPL1 abolished clustering. Phosphorylated RAB12 accumulates on clustered lysosomes, and phosphorylation increases RAB12's interaction with RILPL1, thereby disrupting lysosomal transport. |
RAB12 knockout, RILPL1 knockout, RAB12 re-expression with phospho-site mutants (Ser106), co-immunoprecipitation of phospho-RAB12 with RILPL1, confocal microscopy |
FASEB Journal |
High |
37086089
|
| 2023 |
LRRK2 phosphorylates RAB12 more efficiently in its GDP-bound form than GTP-bound form in vitro, indicating LRRK2 recognizes the nucleotide-determined structural conformation of RAB12. GDP-bound RAB12 is also more susceptible to heat-induced denaturation, as shown by circular dichroism and differential scanning fluorimetry. |
In vitro phosphorylation assay (LRRK2 + GDP- vs GTP-bound RAB12), circular dichroism, differential scanning fluorimetry |
Biochemical and Biophysical Research Communications |
Medium |
37207563
|
| 2024 |
RAB12 forms a direct complex with LRRK2 whose cryo-EM structure was solved. RAB12 cooperates with LRRK2 to inhibit primary ciliogenesis and regulate centrosome homeostasis in astrocytes by enhancing RAB10 phosphorylation and recruiting RILPL1. These functions require direct RAB12-LRRK2 interaction and LRRK2 kinase activity. Deletion of RAB12 in astrocytes prevented ciliary and centrosome defects caused by PD-linked LRRK2-G2019S. |
Cryo-EM structure determination, phosphoproteomics, RAB12 knockout in astrocytes, RILPL1 recruitment assay, primary cilia and centrosome phenotyping |
Nature Communications |
High |
39343966
|
| 2023 |
RAB12 and the AP-1 clathrin adaptor complex interact with EGFR and regulate export of newly synthesized (wild-type) EGFR from the trans-Golgi network to the cell surface. Tyrosine 998 on EGFR is critical for AP-1 binding and TGN export. The constitutively active EGFR-L858R mutant bypasses this requirement. |
Gene knockout, siRNA knockdown, streptavidin pulldown, co-immunoprecipitation, cell elongation/proliferation assays |
Journal of Biological Chemistry |
Medium |
36739948
|
| 2017 |
Rare missense variants of RAB12 found in dystonia patients showed increased GTPase activity and altered subcellular (lysosomal) distribution compared to wild-type in patient-derived fibroblasts and overexpression models. Soluble transferrin receptor 1 levels were reduced in blood of p.Ile196Val carriers. |
GTPase activity assay, subcellular localization imaging in patient fibroblasts and overexpression models, serum TfR1 measurement |
Genes |
Medium |
29057844
|
| 2023 |
An activating variant of DENND3 (p.L708V) upregulates RAB12 expression, leading to lysosomal degradation of TFR2 and downregulation of hepcidin via the DENND3/RAB12/TFR2 axis, causing iron overload in a mouse AAV model and in patient hepatocytes. |
Cell transfection, in vitro lysosomal degradation assay, adeno-associated virus mouse model, liver iron quantification, hepcidin/pSMAD1/5 signaling |
Hepatology International |
Medium |
36729283
|
| 2024 |
Loss of REP-1 (Rab escort protein 1) in a CHM iPSC-RPE model causes under-prenylation of RAB12. Rab12 knockdown in control RPE cells reduced autophagic flux and increased mTORC1 signaling, phenocopying CHM cells. Gene replacement restored autophagic flux in CHM cells. This identifies RAB12 under-prenylation as a contributor to RPE dysfunction in choroideremia. |
CRISPR/Cas9 CHM knockout iPSC-RPE, TMT mass spectrometry (prenylation screen), siRNA knockdown, AAV gene replacement, mTORC1 and autophagic flux assays |
Cells |
Medium |
38920696
|
| 2025 |
In mast cells, LRRK1 (not LRRK2) phosphorylates RAB12 in a PKC-dependent manner upon activation by IgE/antigen or substance P. LRRK1-mediated phosphorylation of RAB12 increases its affinity for RILP-L1 and RILP-L2 while reducing binding to RILP, constituting a phosphorylation-driven effector switch. |
Pulldown assay, siRNA knockdown of LRRK1 and LRRK2, PKC inhibitor and LRRK2 inhibitor treatment, mast cell activation assays |
Frontiers in Immunology |
Medium |
41357239
|
| 2026 |
RAB12 is a negative regulator of synaptic vesicle exocytosis and excitatory neurotransmission in vivo. Rab12 KO mice exhibit increased locomotor activity, enhanced presynaptic release probability and excitatory drive onto striatal medium spiny neurons. Live-cell imaging showed Rab12 deletion facilitates and overexpression inhibits synaptic vesicle exocytosis. RAB12 is biochemically enriched in synaptic vesicle-associated fractions. |
Rab12 KO mouse model, electrophysiology (striatal slices), live-cell imaging of synaptic vesicle exocytosis, biochemical fractionation, synaptosome proteomics |
NPJ Parkinson's Disease |
High |
42031745
|
| 2026 |
RAB12 is a negative regulator of mitophagy. siRNA and KO of RAB12 augmented clearance of damaged mitochondria basally and after FCCP-induced depolarization across distinct cell types. RAB12 depletion increased mitochondrial content, lowered mitochondrial membrane potential, and reduced mitochondrial DNA damage. |
Family-wide siRNA screen (mt-mKeima/YFP-Parkin HeLa cells), RAB12 KO across multiple cell types, mitochondrial content and membrane potential assays, mitochondrial DNA damage measurement |
bioRxivpreprint |
Medium |
41959481
|
| 1996 |
RAB12 protein is associated with atrial secretory granules, demonstrated by GTP-overlay assay and immunogold electron microscopy, suggesting a role in vesicular traffic in these cells. |
[32P]GTP-overlay assay, immunogold electron microscopy, immunoprecipitation/immunoblot |
Circulation Research |
Medium |
8575079
|
| 2005 |
RAB12 is associated with small cytoplasmic vesicles (not the Golgi apparatus) in cultured Sertoli cells and NRK cells. When overexpressed, RAB12-associated vesicles accumulate in the perinuclear centrosome region, suggesting a role in vesicular transport from the cell periphery to the perinuclear centrosome region. |
Immunohistochemistry, immunofluorescence localization in cultured cells, overexpression analysis |
Molecular Reproduction and Development |
Low |
15791598
|