Affinage

PWWP2B

PWWP domain-containing protein 2B · UniProt Q6NUJ5

Length
590 aa
Mass
64.0 kDa
Annotated
2026-06-10
7 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PWWP2B is a nuclear chromatin-associated protein with two characterized roles in gene regulation and genome maintenance (PMID:34180153, PMID:35582821). As a component of the NuRD nucleosome remodeling and deacetylation complex, it interacts with and stabilizes HDAC1/2 at thermogenic gene promoters to repress their expression, and its genetic ablation promotes adipocyte thermogenesis in vivo (PMID:34180153). Independently, PWWP2B is recruited to DNA double-strand break sites through interaction with UHRF1, where it associates with MRE11 to promote DNA end-resection and homologous recombination; its depletion impairs RAD51 foci formation and sensitizes cells to ionizing radiation (PMID:35582821). Beyond these two activities, no further mechanistic detail has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2021 Medium

    Established PWWP2B as a transcriptional repressor by placing it within the NuRD complex and linking it to a physiological output, answering whether this chromatin protein has a defined regulatory function.

    Evidence Co-IP and ChIP at thermogenic promoters with a Pwwp2b knockout mouse showing enhanced adipocyte thermogenesis

    PMID:34180153

    Open questions at the time
    • Single-lab interaction and ChIP data without orthogonal confirmation
    • How PWWP2B targets HDAC1/2 specifically to thermogenic loci versus other NuRD targets is undefined
    • Whether PWWP2B chromatin engagement is reader-domain mediated is not addressed
  2. 2022 Medium

    Defined a second, distinct role for PWWP2B in DNA repair, showing it is recruited to break sites and functions in homologous recombination, which connects this chromatin factor to genome stability.

    Evidence Co-IP (UHRF1, MRE11), IR-induced foci imaging, HR reporter assay, and IR-sensitivity assays after siRNA/shRNA depletion

    PMID:35582821

    Open questions at the time
    • Single-lab dataset without independent replication
    • Whether the NuRD/repressive role and the DSB-repair role are mechanistically connected is unknown
    • How UHRF1 recruits PWWP2B and whether PWWP2B acts directly on MRE11 activity is not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether PWWP2B's transcriptional repression and DNA repair activities reflect one molecular function or two separable contexts, and what its PWWP domain reads on chromatin, remains unresolved.
  • No structural model of chromatin or partner engagement
  • No unifying mechanism linking thermogenic repression and HR repair

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 1
Localization
GO:0005634 nucleus 2 GO:0005694 chromosome 2
Pathway
R-HSA-4839726 Chromatin organization 1 R-HSA-73894 DNA Repair 1
Complex memberships
NuRD

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 PWWP2B is a component of the NuRD (nucleosome remodeling and deacetylation) complex and interacts with and stabilizes HDAC1/2 at thermogenic gene promoters to suppress their expression; ablation of Pwwp2b promotes adipocyte thermogenesis in vivo. Co-immunoprecipitation, chromatin immunoprecipitation, genetic knockout mouse model with thermogenic phenotype readout Advanced science (Weinheim, Baden-Wurttemberg, Germany) Medium 34180153
2022 PWWP2B localizes to sites of DNA double-strand breaks through its interaction with UHRF1, interacts with MRE11, promotes DNA end-resection, and facilitates homologous recombination; depletion of PWWP2B impairs RAD51 foci formation and increases cellular sensitivity to ionizing radiation. Co-immunoprecipitation (interaction with UHRF1 and MRE11), immunofluorescence foci assays (RAD51, DSB markers), siRNA/shRNA depletion with IR sensitivity assays, HR reporter assay EMBO reports Medium 35582821

Source papers

Stage 0 corpus · 7 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 Histone and DNA binding ability studies of the NSD subfamily of PWWP domains. Biochemical and biophysical research communications 19 34271259
2021 PWWP2B Fine-Tunes Adipose Thermogenesis by Stabilizing HDACs in a NuRD Subcomplex. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 15 34180153
2022 PWWP2B promotes DNA end resection and homologous recombination. EMBO reports 4 35582821
2025 The sotos syndrome gene Nsd1 safeguards developmental gene enhancers poised for transcription by maintaining the precise deposition of histone methylation. The Journal of biological chemistry 2 40118455
2024 Structural insights into the C-terminus of the histone-lysine N-methyltransferase NSD3 by small-angle X-ray scattering. Frontiers in molecular biosciences 2 38516186
2025 PWWP2A/B: Prominent players in the proteomic landscape. Gene 1 39809369
2025 Paraspeckle protein NONO regulates active chromatin by allosterically stimulating NSD1. Cell reports 1 40913772

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