Affinage

PTDSS2

Phosphatidylserine synthase 2 · UniProt Q9BVG9

Length
487 aa
Mass
56.3 kDa
Annotated
2026-06-10
48 papers in source corpus 11 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PTDSS2 (PSS2) is a phosphatidylserine synthase that produces phosphatidylserine (PS) through a serine base-exchange reaction, contributing to membrane lipid composition with downstream consequences for fertility, immune evasion, and viral budding (PMID:10432300, PMID:12361952). The purified enzyme converts phosphatidylethanolamine (PE), but not phosphatidylcholine, into PS, and is directly inhibited by its PS product—a feedback regulation that distinguishes it from PSS1 (PMID:10432300, PMID:19014349). PTDSS2 displays marked substrate selectivity, preferring DHA (22:6n-3) at the sn-2 position of PE and thereby preferentially generating DHA-containing PS, and it favors diacyl PE over PE plasmalogen (PMID:23071296). The enzyme localizes to mitochondria-associated membranes and is largely excluded from bulk endoplasmic reticulum (PMID:10938271). In vivo, PTDSS2 accounts for the great majority of serine-exchange activity in testis, brain, and liver, yet its loss leaves bulk phospholipid content unchanged and does not trigger compensatory PSS1 up-regulation; knockout mice show reduced testis weight and male infertility, consistent with high expression in Sertoli cells (PMID:12361952). PTDSS2-dependent PS synthesis is dispensable for PS externalization during apoptosis (PMID:14984733) but supports nonapoptotic PS exposure at the plasma membrane that promotes immunosuppression and breast cancer metastasis and is required for efficient Ebola virus budding (PMID:30289506, PMID:35025764). A gain-of-function R97K mutant, analogous to Lenz-Majewski syndrome PSS1 mutations, impairs osteoclast formation and remodels cellular phospholipid composition (PMID:37714410).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 1999 High

    Established the core catalytic identity of PTDSS2 by showing it uses PE for serine base-exchange and, unlike PSS1, is subject to product feedback inhibition, defining a distinct regulatory mode for this synthase.

    Evidence Stable cDNA expression in hepatoma and CHO cells with in vitro serine-exchange assays, metabolic labeling, and ethanolamine auxotrophy rescue

    PMID:10432300

    Open questions at the time
    • Substrate preference among PE species not yet resolved
    • Structural basis of product inhibition unknown
  2. 2000 High

    Resolved where PTDSS2 acts within the cell, placing it at mitochondria-associated membranes rather than bulk ER, situating PS synthesis at an organelle contact site.

    Evidence Subcellular fractionation and immunoblotting of endogenous and recombinant PSS2 in CHO-K1 and McArdle cells

    PMID:10938271

    Open questions at the time
    • Mechanism of MAM targeting not defined
    • Functional consequence of MAM localization for PS trafficking unaddressed
  3. 2002 High

    Demonstrated the in vivo contribution of PTDSS2 to tissue serine-exchange activity and its physiological role, showing it accounts for most activity in testis, brain, and liver and that its loss impairs male fertility without altering bulk phospholipid content.

    Evidence Pss2 knockout mouse with tissue serine-exchange assays, phospholipid analysis, beta-galactosidase reporter localization, and fertility assessment

    PMID:12361952

    Open questions at the time
    • Why phospholipid content is buffered despite >90% activity loss is unexplained
    • Mechanistic link between PS synthesis and Sertoli cell/fertility function not established
  4. 2004 High

    Tested whether PS synthases drive apoptotic PS externalization and showed they do not, dissociating the bulk PS biosynthetic machinery from the canonical apoptotic 'eat-me' signal.

    Evidence Staurosporine-induced apoptosis in PSS1- and/or PSS2-deficient CHO cells with annexin V flow cytometry and DNA fragmentation

    PMID:14984733

    Open questions at the time
    • Source of PS externalized during apoptosis not identified
    • Does not address nonapoptotic PS exposure
  5. 2009 High

    Confirmed substrate specificity and product inhibition directly with purified human enzyme, removing ambiguity from cell-based assays.

    Evidence Purified epitope-tagged human PSS2 in in vitro assays with defined substrates and exogenous PS

    PMID:19014349

    Open questions at the time
    • Kinetic parameters and inhibition constants not detailed here
    • No structural model of substrate/product binding
  6. 2012 High

    Defined acyl-chain selectivity, showing PTDSS2 preferentially uses DHA-containing PE and diacyl over plasmalogen PE, explaining how it shapes the DHA-rich PS pool.

    Evidence Immunopurified Flag-tagged PSS2 from HEK cells assayed with defined substrate species, plus mutant cell microsomes

    PMID:23071296

    Open questions at the time
    • Structural determinant of DHA preference unknown
    • In vivo relevance of acyl preference to specific tissues not tested
  7. 2018 Medium

    Linked PTDSS2-generated PS to viral egress by showing combined PTDSS1/PTDSS2 knockdown blocks Ebola virus budding at the plasma membrane.

    Evidence siRNA co-knockdown of PTDSS1 and PTDSS2 with viral production assay and electron microscopy

    PMID:30289506

    Open questions at the time
    • PTDSS1 and PTDSS2 knocked down together, so individual PTDSS2 contribution not isolated
    • Single lab, single virus
  8. 2022 Medium

    Connected PTDSS2 expression to nonapoptotic surface PS exposure that drives tumor immune evasion and metastasis, and placed it downstream of BRCA1 regulation.

    Evidence Expression manipulation, PS externalization assays, in vivo mouse metastasis model, and tumor microenvironment analysis

    PMID:35025764

    Open questions at the time
    • Mechanism by which BRCA1 represses PTDSS2 not defined
    • Single lab; direct causality of surface PS in immunosuppression partly correlative
  9. 2023 Medium

    Showed a gain-of-function PSS2 mutation analogous to Lenz-Majewski PSS1 mutations remodels cellular phospholipid composition and impairs osteoclast formation, implicating PTDSS2 activity in bone cell biology.

    Evidence Expression of PSS2 R97K gain-of-function mutant in osteoclast precursors with differentiation assays, podosome imaging, and lipidomics; catalytically inactive control

    PMID:37714410

    Open questions at the time
    • No human disease attributable to PTDSS2 mutation demonstrated
    • Mechanism linking lipid changes to osteoclast defect unresolved
    • Single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PTDSS2-derived PS is selectively trafficked from MAM to the plasma membrane outer leaflet, and what controls its tissue-specific physiological versus disease-associated roles, remains unresolved.
  • No defined PS transport pathway from MAM to plasma membrane in the corpus
  • No structural model of the enzyme
  • Regulators beyond product inhibition and BRCA1 largely uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 3 GO:0016787 hydrolase activity 2
Localization
GO:0005739 mitochondrion 1 GO:0005783 endoplasmic reticulum 1
Pathway
R-HSA-1430728 Metabolism 3

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 PTDSS2 (PSS2) is localized to mitochondria-associated membranes (MAM) and is largely excluded from the bulk of the endoplasmic reticulum, as determined by immunoblotting of CHO-K1 cells and McArdle cells stably expressing recombinant PSS2. Subcellular fractionation, immunoblotting of endogenous and recombinant PSS2 in CHO-K1 and hepatoma cell lines The Journal of biological chemistry High 10938271
1999 PTDSS2 (PSS2) uses phosphatidylethanolamine (PE) as its primary substrate for the serine base-exchange reaction to synthesize phosphatidylserine, and its activity is subject to end-product (PS) inhibition, in contrast to PSS1 which is not subject to this feedback regulation. Stable cDNA expression in McArdle hepatoma and M.9.1.1 CHO cells; in vitro serine exchange assays; phospholipid metabolic labeling; ethanolamine auxotrophy rescue The Biochemical journal High 10432300
2009 Purified human PTDSS2 (PSS2) catalyzes conversion of PE (but not PC) into PS, and the purified enzyme is inhibited by exogenous PS added to the assay mixture, demonstrating direct feedback inhibition by its product. Purification of epitope-tagged human PSS2 and in vitro enzymatic assay with defined substrates; PS inhibition assay with purified enzyme The Biochemical journal High 19014349
2002 Pss2-deficient mice retain less than 5% of normal serine exchange activity in testis extracts and approximately 10% in brain and liver, demonstrating that PTDSS2 is responsible for the majority of PS serine exchange activity in these tissues; however, phospholipid content is not perturbed and Pss1 expression is not compensatorily up-regulated. Pss2 knockout mouse generation; in vitro serine exchange assays on tissue extracts; phospholipid content analysis; Northern blotting for Pss1 The Journal of biological chemistry High 12361952
2002 Pss2 is highly expressed in Sertoli cells of the testis, brown fat, neurons, and myometrium as revealed by beta-galactosidase reporter expressed from Pss2 regulatory sequences in knockout mice; testis weight is reduced and some males are infertile in Pss2-deficient mice. Beta-galactosidase reporter knock-in at Pss2 locus in mice; histological analysis; fertility assessment The Journal of biological chemistry Medium 12361952
2012 Purified PTDSS2 (PSS2) shows significant preference for DHA (docosahexaenoic acid, 22:6n-3) at the sn-2 position of PE substrates compared to 18:1 or 20:4, and preferentially produces DHA-containing PS; it utilizes both diacyl PE and PE plasmalogen substrates, but diacyl PE is used ~6-fold more efficiently. Immunopurification of Flag-tagged PSS2 from HEK cells; in vitro enzyme assay with defined substrate species; also confirmed with PSS2-dependent mutant cell microsomes and PSS2 from multiple cell lines Journal of lipid research High 23071296
2004 Neither PSS1 nor PSS2, nor both together, is specifically required for externalization of phosphatidylserine during apoptosis; CHO cells deficient in PSS1, PSS2, or both show normal PtdSer externalization upon staurosporine-induced apoptosis despite >97% reduction in serine-exchange activity. Apoptosis induction with staurosporine in PSS1- and/or PSS2-deficient CHO cell lines; annexin V labeling and flow cytometry; DNA fragmentation assay Biochimica et biophysica acta High 14984733
2018 Knockdown of both PTDSS1 and PTDSS2 decreases Ebola virus (EBOV) production and results in accumulation of virions at the plasma membrane and adjacent intracellular organelles, indicating that PS synthesized by these enzymes is required for efficient EBOV budding. siRNA knockdown of PTDSS1 and PTDSS2 in infected cells; viral production assay; electron microscopy of virion localization The Journal of infectious diseases Medium 30289506
2022 High PTDSS2 expression (in conjunction with low ATP11B expression) is associated with increased nonapoptotic phosphatidylserine on the outer leaflet of the cell membrane, which promotes immunosuppression and breast cancer metastasis; BRCA1 negatively regulates PTDSS2 expression in this axis. Expression manipulation experiments; PS externalization assays; in vivo mouse metastasis model; tumor microenvironment analysis (myeloid-derived suppressor cells, cytotoxic T cells) The Journal of clinical investigation Medium 35025764
2023 A gain-of-function mutant of PSS2 (R97K), analogous to the Lenz-Majewski syndrome PSS1 mutations, impairs osteoclast formation, multinucleation, and activity, and alters the acyl chain composition of PS and phosphatidylethanolamine and decreases phosphatidylinositol levels. Expression of PSS2 R97K gain-of-function mutant in osteoclast precursor cells; osteoclast differentiation assays; actin podosome imaging; lipidomic analysis; catalytically inactive mutant as control Journal of lipid research Medium 37714410
2007 Maternal ethanol exposure significantly attenuates microsomal PS biosynthetic activity and reduces PS (particularly 18:0, 22:6-PS) in developing rat brain cortices without reducing PSS2 mRNA expression, and the 18:0, 22:6-PE substrate is the best substrate for PSS2-dependent PS synthesis. In vitro microsomal PS biosynthesis assay with deuterium-labeled substrates and ESI-MS; mRNA quantification; RT-PCR Journal of neuroscience research Low 17387686
2007 Over-expression of PSS2 (or PSS1) did not alter the PS level or the effect of DHA on PS increase in either neuronal or non-neuronal cells, and DHA enrichment did not affect PSS2 mRNA levels. Overexpression of PSS1 and PSS2 in Neuro 2A and non-neuronal cell lines; DHA enrichment; lipid mass spectrometry; RT-PCR Journal of molecular neuroscience : MN Medium 17901548

Source papers

Stage 0 corpus · 48 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes. The Journal of biological chemistry 297 10938271
1986 Tn4351 transposes in Bacteroides spp. and mediates the integration of plasmid R751 into the Bacteroides chromosome. Journal of bacteriology 126 3005243
2009 The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'. Environmental microbiology 94 19840100
1985 Evidence that the clindamycin-erythromycin resistance gene of Bacteroides plasmid pBF4 is on a transposable element. Journal of bacteriology 85 2985540
2011 Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges. Environmental microbiology 82 22188618
2002 Defining the importance of phosphatidylserine synthase 2 in mice. The Journal of biological chemistry 82 12361952
1996 Occurrence of two somatostatin variants in the frog brain: characterization of the cDNAs, distribution of the mRNAs, and receptor-binding affinities of the peptides. Proceedings of the National Academy of Sciences of the United States of America 79 8901629
1999 Cloning and expression of murine liver phosphatidylserine synthase (PSS)-2: differential regulation of phospholipid metabolism by PSS1 and PSS2. The Biochemical journal 56 10432300
2009 Purification and characterization of human phosphatidylserine synthases 1 and 2. The Biochemical journal 52 19014349
2020 Phosphatidylserine biosynthesis pathways in lipid homeostasis: Toward resolution of the pending central issue for decades. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 49 33205488
1990 Two genes that regulate exopolysaccharide production in Rhizobium meliloti. Journal of bacteriology 46 2118508
2014 Heterologous expression of pyrroloquinoline quinone (pqq) gene cluster confers mineral phosphate solubilization ability to Herbaspirillum seropedicae Z67. Applied microbiology and biotechnology 45 24682480
2000 Structure and expression of the murine phosphatidylserine synthase-1 gene. The Journal of biological chemistry 38 11084049
2012 Phosphatidylserine synthase 2: high efficiency for synthesizing phosphatidylserine containing docosahexaenoic acid. Journal of lipid research 36 23071296
1999 Molecular cloning of the cDNAs and distribution of the mRNAs encoding two somatostatin precursors in the African lungfish Protopterus annectens. The Journal of comparative neurology 34 10398054
2023 Luteolin alleviates depression-like behavior by modulating glycerophospholipid metabolism in the hippocampus and prefrontal cortex of LOD rats. CNS neuroscience & therapeutics 32 37715585
2007 Neuronal specific increase of phosphatidylserine by docosahexaenoic acid. Journal of molecular neuroscience : MN 32 17901548
2013 Phospholipid biosynthesis genes and susceptibility to obesity: analysis of expression and polymorphisms. PloS one 30 23724137
2003 Characterization of the cDNA encoding a somatostatin variant in the chicken brain: comparison of the distribution of the two somatostatin precursor mRNAs. The Journal of comparative neurology 29 12746861
2002 Polygenic expression of somatostatin in the sturgeon Acipenser transmontanus: molecular cloning and distribution of the mRNAs encoding two somatostatin precursors. The Journal of comparative neurology 28 11807842
2024 Biochemistry and Diseases Related to the Interconversion of Phosphatidylcholine, Phosphatidylethanolamine, and Phosphatidylserine. International journal of molecular sciences 24 39409074
2023 RNA Sequencing (RNA-Seq) Analysis Reveals Liver Lipid Metabolism Divergent Adaptive Response to Low- and High-Salinity Stress in Spotted Scat (Scatophagus argus). Animals : an open access journal from MDPI 24 37174540
2022 Tormentic Acid Ameliorates Hepatic Fibrosis in vivo by Inhibiting Glycerophospholipids Metabolism and PI3K/Akt/mTOR and NF-κB Pathways: Based on Transcriptomics and Metabolomics. Frontiers in pharmacology 24 35359829
2022 ATP11B inhibits breast cancer metastasis in a mouse model by suppressing externalization of nonapoptotic phosphatidylserine. The Journal of clinical investigation 22 35025764
2022 27-Hydroxycholesterol, The Estrogen Receptor Modulator, Alters DNA Methylation in Breast Cancer. Frontiers in endocrinology 22 35360070
2004 Externalization of phosphatidylserine during apoptosis does not specifically require either isoform of phosphatidylserine synthase. Biochimica et biophysica acta 17 14984733
2007 Inhibition of phosphatidylserine biosynthesis in developing rat brain by maternal exposure to ethanol. Journal of neuroscience research 15 17387686
2012 Microbiological investigation of Raphanus sativus L. grown hydroponically in nutrient solutions contaminated with spoilage and pathogenic bacteria. International journal of food microbiology 13 23290244
2019 Membrane phospholipids remodeling upon imbibition in Brassica napus L. seeds. Biochemical and biophysical research communications 12 31146920
2018 Disruption of Phosphatidylserine Synthesis or Trafficking Reduces Infectivity of Ebola Virus. The Journal of infectious diseases 12 30289506
2007 The involvement of tetA and tetE tetracycline resistance genes in plasmid and chromosomal resistance of Aeromonas in Brazilian strains. Memorias do Instituto Oswaldo Cruz 12 18060315
2021 Identification of major depressive disorder disease-related genes and functional pathways based on system dynamic changes of network connectivity. BMC medical genomics 11 33622334
2008 Distribution of somatostatin immunoreactive neurons and fibres in the central nervous system of a chondrostean, the Siberian sturgeon (Acipenser baeri). Brain research 10 18400215
2021 IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis. BMC medicine 9 34781942
2002 Expression and processing of the [Pro(2),Met(13)]somatostatin-14 precursor in the intermediate lobe of the frog pituitary. Endocrinology 9 12193560
2023 A novel metabolism-related gene signature in patients with hepatocellular carcinoma. PeerJ 6 38025761
2021 Effects of Peptide-Induced Immune Tolerance on Murine Lupus. Frontiers in immunology 6 34093553
2010 The cortistatin gene PSS2 rather than the somatostatin gene PSS1 is strongly expressed in developing avian autonomic neurons. The Journal of comparative neurology 6 20058310
2023 Disease-related PSS1 mutant impedes the formation and function of osteoclasts. Journal of lipid research 4 37714410
2025 Molecular identification of somatostatin family in tilapia and the effect of food intake on pss2 and sstr3a. Scientific reports 2 40221493
2021 Gonadal lipidomics profile of an ovoviviparity teleost, black rockfish, during gonadal development. Fish physiology and biochemistry 2 33694040
2003 Ca2+-dependent phosphatidylserine synthesis in immature and mature starfish oocytes. Acta biochimica Polonica 2 12833164
2024 Development and application of a quadruplex TaqMan fluorescence quantitative PCR typing method for Streptococcus suis generalis, type 2, type 7 and type 9. Frontiers in cellular and infection microbiology 1 39624263
2026 Tolerogenic dendritic cells induced by withdrawal of polyunsaturated fatty acid DHA and mTOR inhibitor PP242 attenuate allograft rejection. Acta biochimica et biophysica Sinica 0 41755559
2025 Role of anethole dithiolethione regulating liver lipid metabolism, oxidative and ER stress in NAFLD: Insights from a mouse model. Pakistan journal of pharmaceutical sciences 0 40501246
2025 Physiological and molecular responses to different sizes of polystyrene micro/nanoplastics in the model unicellular eukaryote Paramecium tetraurelia. Journal of hazardous materials 0 40543334
2024 Formulation of complementary flours from pretreated pumpkin pulp, soybeans and spinach leaves: Nutritional, functional and sensory characterization. Heliyon 0 39296220
1985 [Plasmids of the cyanobacterium Synechocystis sp. 6803]. Molekuliarnaia genetika, mikrobiologiia i virusologiia 0 3025718

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