Affinage

PRKCE

Protein kinase C epsilon type · UniProt Q02156

Length
737 aa
Mass
83.7 kDa
Annotated
2026-06-10
18 papers in source corpus 11 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PRKCE encodes PKCε, a serine/threonine kinase that integrates growth-factor, metabolic, and stress signaling to regulate cell survival, lipid handling, and development (PMID:28934384, PMID:21347625). In the mTORC2 module, PKCε engages the mTORC2 component SIN1 to support mTORC2-dependent priming and AKT-S473 phosphorylation; a de novo partial loss-of-function mutation that binds SIN1 with higher affinity and impairs downstream pAKT-S473, pFOXO1-S256, and pS6 phosphorylation causes SHORT syndrome (PMID:28934384), and CNS-restricted loss likewise downregulates VEGF/PI3K-driven AKT activation, producing cerebral and cerebellar atrophy with motor and social deficits (PMID:40914752). Metabolically, PKCε shapes hepatic lipid partitioning and mitochondrial oxidative capacity, with its deletion reducing fatty-acid-derived ROS and protecting against diet-induced glucose intolerance (PMID:21347625), and in macrophages it restricts cholesterol and lipid-droplet accumulation independently of scavenger-receptor expression, limiting atherosclerotic plaque burden. In cancer, PKCε is anti-apoptotic: it acts downstream of Ras/Raf-1 to inhibit mitochondrial apoptosis (PMID:23457043) and drives MDR1/P-glycoprotein-mediated gemcitabine resistance (PMID:28492560), and it is held in check by multiple microRNAs (miR-218-5p, miR-146a, miR-205-5p) that bind its 3'-UTR (PMID:28492560, PMID:23457043, PMID:32869841). PKCε is also required for the first embryonic cleavage and the maternal-to-zygotic transition through cell-cycle gene regulation (PMID:35582855), and its own promoter is controlled by Sp1-binding sites subject to DNA-methylation-dependent repression (PMID:18945988).

Mechanistic history

Synthesis pass · year-by-year structured walk · 13 steps
  1. 2008 High

    Established how PRKCE expression itself is transcriptionally controlled, showing the gene is a methylation-sensitive Sp1 target and a node for epigenetic programming.

    Evidence Bisulfite methylation mapping, luciferase reporter and SP1 binding assays in a fetal-cocaine-exposure rat model

    PMID:18945988

    Open questions at the time
    • Sex-specific basis of the methylation effect not mechanistically explained
    • Does not address PKCε protein function, only its transcriptional regulation
  2. 2011 High

    Defined a metabolic role for PKCε, resolving that its deletion protects against glucose intolerance via hepatic lipid partitioning/ROS and enhanced insulin secretion.

    Evidence Prkce knockout mice on high-fat diet with glucose tolerance tests, proteomics, and primary hepatocyte mitochondrial assays

    PMID:21347625

    Open questions at the time
    • Direct kinase substrates linking PKCε to lipid partitioning not identified
    • Tissue source of the insulin-secretion benefit not pinpointed
  3. 2013 Medium

    Showed PKCε is an anti-apoptotic effector downstream of Ras/Raf-1 and a direct microRNA target, framing it as a tumor-promoting kinase.

    Evidence miR-146a 3'-UTR luciferase reporter, overexpression, apoptosis assays and xenografts in papillary thyroid carcinoma

    PMID:23457043

    Open questions at the time
    • Direct substrates mediating mitochondrial apoptosis inhibition not defined
    • Single tumor type
  4. 2015 Medium

    Placed PRKCE within an innate-immune anti-cancer program, identifying it as a gene suppressed by IPS-1/IRF3/IRF7 signaling.

    Evidence IPS-1 expression and shRNA knockdown of IPS-1/IRF3/IRF7 with transcriptional and apoptosis readouts in cancer cells

    PMID:25950488

    Open questions at the time
    • Whether PRKCE downregulation is causal for the apoptotic effect or correlative not resolved
    • Direct transcriptional control of PRKCE by IRFs not demonstrated
  5. 2017 Medium

    Connected PKCε to drug resistance, showing miR-218-5p represses PRKCE and that PKCε drives MDR1/P-glycoprotein-mediated gemcitabine resistance.

    Evidence 3'-UTR luciferase reporter, miRNA modulation, and viability assays in gallbladder cancer cells

    PMID:28492560

    Open questions at the time
    • Mechanism linking PKCε activity to MDR1 upregulation not defined
    • No in vivo resistance model in this study
  6. 2017 High

    Defined PKCε's role in the mTORC2-AKT axis and established its first Mendelian disease link, showing a SIN1-binding partial loss-of-function mutation causes SHORT syndrome.

    Evidence Whole exome sequencing, kinase assays, co-IP of PDK1/SIN1, and phospho-readouts in patient lymphoblasts and HEK293 cells

    PMID:28934384

    Open questions at the time
    • Structural basis of enhanced SIN1 binding by the mutant not solved
    • How altered priming translates to multi-substrate AKT-pathway impairment incompletely mapped
  7. 2020 Medium

    Reinforced the microRNA-PKCε resistance axis in cancer stem cells, validating miR-205-5p as a further direct repressor of PRKCE.

    Evidence 3'-UTR luciferase reporter, miRNA overexpression, PRKCE knockdown, and xenografts in gallbladder cancer stem cells

    PMID:32869841

    Open questions at the time
    • Overlap/redundancy among the multiple PRKCE-targeting miRNAs not addressed
    • Downstream effectors of PKCε in stemness not defined
  8. 2022 High

    Revealed a developmental requirement for maternal PKCε, showing it is essential for the first embryonic cleavage and maternal-to-zygotic transition through cell-cycle gene regulation.

    Evidence Prkce knockout mice with cRNA rescue, IVF, transcriptomics, and immunofluorescence

    PMID:35582855

    Open questions at the time
    • Direct kinase targets controlling the cleavage cell cycle not identified
    • Mechanism connecting PKCε to the 143 differentially expressed cell-cycle genes unknown
  9. 2025 Medium

    Extended the mTORC2/AKT role to brain development, showing CNS PKCε loss downregulates VEGF/PI3K-AKT signaling and causes atrophy, consistent with SHORT syndrome.

    Evidence CNS-specific Prkce knockout mice with morphometry, behavior, and AKT-pathway immunoblotting

    PMID:40914752

    Open questions at the time
    • Single lab, single paper
    • Cell-autonomous versus vascular contribution to atrophy not separated
  10. 2025 Medium

    Implicated PRKCE in oncogenic gene fusion, showing a PRKCE::ETV6 fusion confers cytokine-independent proliferation in T-ALL models.

    Evidence Genomic/RNA sequencing, FISH, and ectopic fusion expression with IL-independent proliferation/survival assays in Ba/F3 and D1 cells

    PMID:41123786

    Open questions at the time
    • Signaling output of the fusion protein not delineated
    • Patient-level oncogenicity beyond cell-line models not established
  11. 2025 Medium

    Linked reduced PRKCE to glycolytic reprogramming, showing low PKCε upregulates PKG/phospho-VASP via cGMP-PKG to enhance glycolysis and bladder cancer susceptibility.

    Evidence Allele-specific expression and functional ECAR/lactate/glucose-uptake and phospho-VASP assays in 4-ABP-treated bladder cancer cells

    PMID:41883368

    Open questions at the time
    • Single lab, single paper
    • Direct mechanism by which PKCε loss derepresses PKG not defined
  12. 2025 Medium

    Identified a myeloid lipid-handling function, showing PKCε restricts macrophage cholesterol/lipid-droplet accumulation independently of scavenger receptors and limits atherosclerosis.

    Evidence Myeloid-specific Prkce knockout mice with macrophage lipid-loading, RNA-seq, and plaque histomorphometry (preprint)

    Open questions at the time
    • Endocytic genes implicated but causal substrate not identified
    • Preprint, not peer-reviewed
  13. 2024 Low

    Suggested a subtype-specific translational role, finding PKCε associates with ribosomes selectively in subcerebral projection neurons during circuit formation.

    Evidence Ribosome immunoprecipitation and mass spectrometry in FACS-purified mouse cortical neuron subtypes (preprint)

    Open questions at the time
    • Functional consequence of ribosome association not experimentally established
    • Preprint, single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct phosphorylation substrates that mediate PKCε's effects across mTORC2 signaling, lipid metabolism, cell-cycle control, and drug resistance remain largely unidentified.
  • No defined substrate set
  • Spatiotemporal targeting mechanisms to sarcomeres/mitochondria/ribosomes not mechanistically resolved
  • Unified model linking diverse phenotypes to kinase activity absent

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005739 mitochondrion 1 GO:0005840 ribosome 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-1430728 Metabolism 2 R-HSA-5357801 Programmed Cell Death 2 R-HSA-1640170 Cell Cycle 1
Partners
Complex memberships
mTORC2

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2017 A de novo partial loss-of-function mutation in PRKCE (PKCε) causes SHORT syndrome by impairing mTORC2-dependent AKT activation. The mutant PKCε bound to the mTORC2 component SIN1 with higher affinity than wild-type, altered mTORC2-dependent priming dynamics, and caused impaired mTORC2-dependent pAKT-S473 following rapamycin treatment, as well as reduced pFOXO1-S256 and pS6-S240/244 in patient lymphoblasts. Interaction with PDK1 and SIN1 was preserved in the mutant. Whole exome sequencing, kinase activity assay, phospho-specific antibody immunoblotting in patient lymphoblasts and HEK293 ectopic expression, co-immunoprecipitation of PDK1/SIN1 interactions Human molecular genetics High 28934384
2017 PRKCE is a direct target of miR-218-5p: miR-218-5p overexpression repressed luciferase activity of reporter constructs containing the 3'-UTR of PRKCE and reduced PRKCE protein expression. PRKCE promotes gemcitabine resistance in gallbladder cancer cells through upregulation of MDR1/P-glycoprotein. Luciferase 3'-UTR reporter assay, miRNA overexpression/knockdown, Western blotting, cell viability assays Cell death & disease Medium 28492560
2013 miR-146a directly binds the 3'-UTR of PRKCE (confirmed by luciferase reporter assay) and decreases PKCε protein levels in papillary thyroid carcinoma cells, leading to increased apoptosis and suppressed tumor growth in a subcutaneous xenograft model. PKCε acts downstream of the Ras/Raf-1 pathway and inhibits mitochondrial apoptosis in thyroid cancer cells. Luciferase 3'-UTR reporter assay, miR-146a stable overexpression, Western blotting, apoptosis assays, xenograft tumor growth International journal of cancer Medium 23457043
2020 miR-205-5p directly targets PRKCE (validated by luciferase reporter assay) and negatively regulates its expression in gallbladder cancer stem cells. Overexpression of miR-205-5p or silencing of PRKCE inhibited drug resistance, proliferation, and colony formation while promoting apoptosis, and attenuated gemcitabine resistance in vivo. Luciferase 3'-UTR reporter assay, miRNA overexpression, PRKCE knockdown, apoptosis assays (Bax, Bcl-2, cleaved caspase 3 Western blot), mouse xenograft model Bioscience reports Medium 32869841
2011 Deletion of Prkce in mice protects against diet-induced glucose intolerance via two temporally distinct mechanisms: (1) early protection via altered hepatic lipid partitioning that reduces fatty acid catabolism-derived reactive oxygen species (ROS), and (2) later enhancement of glucose-stimulated insulin secretion. Prkce-/- hepatocytes showed reduced ROS production in the presence of palmitate and altered mitochondrial oxidative capacity. Prkce knockout mice on high-fat diet, glucose tolerance tests, indirect calorimetry, iTRAQ quantitative proteomics, immunoblotting, primary hepatocyte assays, mitochondrial oxidative capacity measurements Diabetologia High 21347625
2008 Fetal cocaine exposure programs cardiac Prkce gene repression in adult male rat offspring via DNA methylation of two Sp1 binding sites (-346 and -268) in the Prkce promoter. Methylation of these sites decreased SP1 binding affinity to the promoter, and reporter gene assays confirmed both Sp1 sites have a strong stimulatory role in Prkce gene activity. The effect was sex-dependent (males but not females showed decreased Prkce mRNA and both Sp1 sites methylated). Bisulfite sequencing/methylation analysis of Prkce promoter CpGs, luciferase reporter gene assay, electrophoretic mobility shift/SP1 binding assays, RT-PCR, in vivo rat model Biology of reproduction High 18945988
2022 Maternal Prkce transcript in mature oocytes is critical for the first cleavage and facilitating the maternal-to-zygotic transition in mice. Prkce knockout mice showed a significantly reduced 2-cell rate (32.4% vs 80.1% in wild-type) that was rescued by Prkce cRNA injection (76.7% 2-cell rate). Global transcriptional analysis of knockout embryos revealed 143 differentially expressed genes largely enriched in cell cycle regulation pathways. Prkce knockout mice, in vitro fertilization, cRNA rescue injection, microarray/RNA sequencing, RT-qPCR, Western blotting, immunofluorescence Cell proliferation High 35582855
2015 IPS-1-mediated anticancer signaling via IRF3 and IRF7 downregulates PRKCE (along with BCL2 and BIRC3) as part of its anti-apoptotic gene suppression program. Stable knockdown of IPS-1, IRF3, or IRF7 in IFN-non-responsive cancer cells reduced anticancer activity and suppressed downregulation of PRKCE. IPS-1 ectopic expression, stable shRNA knockdown of IPS-1/IRF3/IRF7, gene expression analysis, apoptosis assays in cancer cell lines Cell death & disease Medium 25950488
2025 PKCε deficiency in the central nervous system leads to cerebral and cerebellar atrophy and motor/social deficits. Mechanistically, deletion of PKCε results in downregulation of VEGF/PI3K-induced AKT activation, causing abnormal brain development. This is consistent with the SHORT syndrome phenotype previously linked to PRKCE mutation. Prkce knockout mice (CNS-specific), brain morphometry, behavioral testing, phospho-specific immunoblotting of AKT pathway components Neuroscience bulletin Medium 40914752
2025 A PRKCE::ETV6 fusion gene resulting from a complex chromosomal rearrangement of chromosomes 2 and 12 in near-ETP T-ALL confers interleukin-independent proliferation and enhanced survival in cytokine-dependent cellular models (Ba/F3 pro-B cells and D1 T-cells), supporting its role as an oncogenic driver. Targeted genomic capture high-throughput sequencing, RNA sequencing, RT-PCR, Sanger sequencing, FISH, ectopic expression of PRKCE::ETV6 fusion in Ba/F3 and D1 cell lines, IL-independent proliferation and survival assays Molecular and cellular pediatrics Medium 41123786
2025 In bladder cancer cells, decreased PRKCE expression (associated with the rs4953292 A allele combined with 4-aminobiphenyl treatment) upregulates PKG and promotes phosphorylation of VASP within the cGMP-PKG signaling pathway, enhancing glucose uptake, lactate generation, and extracellular acidification rate to reprogram glycolysis, thereby promoting bladder cancer susceptibility. Functional experiments in 4-ABP-treated bladder cancer cells, allele-specific PRKCE expression analysis, ECAR measurement, lactate/glucose uptake assays, phospho-VASP immunoblotting Environment & health Medium 41883368
2024 PRKCE protein associates with ribosomal complexes specifically in subcerebral projection neurons (SCPN) but not callosal projection neurons (CPN) during axonal connectivity establishment in mouse cortex. This SCPN-specific ribosome association was validated by ribosome immunoprecipitation and PKCε has enriched gene expression in SCPN, suggesting a role in subtype-specific translational regulation during circuit formation. Retrograde neuronal labeling, FACS purification of neuron subtypes, ribosome immunoprecipitation, ultra-low-input mass spectrometry, gene expression analysis bioRxivpreprint Low
2024 Myeloid PKCε restricts lipid uptake in macrophages by a mechanism independent of scavenger receptor expression. PKCε-deficient macrophages (mεKO) retained significantly more cholesterol and lipid droplets upon lipid loading in vitro and in vivo, and RNA sequencing implicated higher expression of genes related to endocytosis in mεKO macrophages. mεKO mice developed larger atherosclerotic plaques with more necrosis and thinner collagen caps. Myeloid-specific Prkce knockout mice (LysM Cre PKCε fl/fl), bone marrow-derived macrophage lipid loading assays, cholesterol retention assays, RNA sequencing, in vivo hypercholesterolemia model, plaque histomorphometry bioRxivpreprint Medium

Source papers

Stage 0 corpus · 18 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2017 miR-218-5p restores sensitivity to gemcitabine through PRKCE/MDR1 axis in gallbladder cancer. Cell death & disease 59 28492560
2011 Time-dependent effects of Prkce deletion on glucose homeostasis and hepatic lipid metabolism on dietary lipid oversupply in mice. Diabetologia 50 21347625
2013 MicroRNA-146a targets PRKCE to modulate papillary thyroid tumor development. International journal of cancer 41 23457043
2015 IPS-1 differentially induces TRAIL, BCL2, BIRC3 and PRKCE in type I interferons-dependent and -independent anticancer activity. Cell death & disease 40 25950488
2008 Fetal exposure to cocaine causes programming of Prkce gene repression in the left ventricle of adult rat offspring. Biology of reproduction 32 18945988
2016 PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes. Gene 25 27312950
2020 Overexpression of microRNA-205-5p exerts suppressive effects on stem cell drug resistance in gallbladder cancer by down-regulating PRKCE. Bioscience reports 24 32869841
2017 SHORT syndrome due to a novel de novo mutation in PRKCE (Protein Kinase Cɛ) impairing TORC2-dependent AKT activation. Human molecular genetics 18 28934384
2022 Influence of PRKCE non-synonymous variants on protein dynamics and functionality. Human molecular genetics 16 35137073
2019 ANXA2, PRKCE, and OXT are critical differentially genes in Nonalcoholic fatty liver disease. Gastroenterology and hepatology from bed to bench 13 31191837
2021 Genome-wide DNA methylation profiling in nonalcoholic fatty liver reveals predictive aberrant methylation in PRKCE and SEC14L3 promoters. Digestive and liver disease : official journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver 11 34108094
2022 PRKCE non-coding variants influence on transcription as well as translation of its gene. RNA biology 9 36299231
2022 A Novel Cryptic t(2;3)(p21;q25) Translocation Fuses the WWTR1 and PRKCE Genes in Uterine Leiomyoma With 3q- as the Sole Visible Chromosome Abnormality. Cancer genomics & proteomics 5 35985686
2022 Variants in PRKCE and KLC1, Potential Regulators of Type I Psoriasis. Clinical, cosmetic and investigational dermatology 4 35800456
2022 Maternal Prkce expression in mature oocytes is critical for the first cleavage facilitating maternal-to-zygotic transition in mouse early embryos. Cell proliferation 1 35582855
2025 Deletion of the SHORT Syndrome Gene Prkce Results in Brain Atrophy and Cognitive and Motor Behavior Deficits in Mice. Neuroscience bulletin 0 40914752
2025 Characterization of a PRKCE::ETV6 fusion as a potential oncogenic driver in T-cell acute lymphoblastic leukemia. Molecular and cellular pediatrics 0 41123786
2025 Cigarette Smoking-Regulated PRKCE Is Involved in Bladder Cancer Susceptibility through cGMP/PKG-Dependent Glycolysis. Environment & health (Washington, D.C.) 0 41883368

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