| 2003 |
POLQ encodes a 2592-amino acid protein with an N-terminal ATPase-helicase domain, a central spacer domain, and a C-terminal family A DNA polymerase domain. Purified full-length human POLQ displays DNA polymerase activity on nicked double-stranded DNA and singly primed templates (resistant to aphidicolin, inhibited by dideoxynucleotides) and a single-stranded DNA-dependent ATPase activity. |
Baculovirus expression and purification of full-length human POLQ; in vitro polymerase and ATPase assays; domain analysis by sequence |
Nucleic acids research |
High |
14576298
|
| 2010 |
The DNA polymerase (pol) domain of POLQ is sufficient for highly efficient bypass of abasic sites, independent of the helicase-like or central domains. Three unique sequence insertions (not found in other A-family polymerases) are required for lesion bypass: insertion 1 increases processivity but does not affect TLS; insertions 2 and 3 are essential for activity on undamaged DNA and completely required for bypass of abasic sites and thymine glycol lesions. |
In vitro polymerase assay with purified recombinant POLQ pol domain deletion constructs lacking each insertion element individually; translesion synthesis assays on abasic site and thymine glycol templates |
Journal of molecular biology |
High |
21050863
|
| 2007 |
POLQ (pol theta) can extend DNA from mismatched termini (A:G, A:T, A:C mismatches) with less discrimination than E. coli pol I, and can extend from primers placed opposite a (6-4) photoproduct. When combined with DNA polymerase iota (which inserts opposite the lesion), POLQ enables complete bypass of a (6-4) photoproduct, acting as an extender polymerase. |
In vitro primer extension assays with purified POLQ on templates containing mismatches, cyclobutane pyrimidine dimers, and (6-4) photoproducts; two-polymerase reconstitution with pol iota + POLQ |
DNA repair |
High |
17920341
|
| 2006 |
POLQ participates in base excision repair (BER) of oxidative DNA damage and has an overlapping function with POLbeta. POLQ-deficient DT40 cells are hypersensitive to H2O2-induced oxidative base damage; this is synergistically enhanced by concurrent POLbeta deletion. Cell extracts from POLQ-null cells show reduced BER activity. POLQ accumulates rapidly at sites of base damage, similar to POLbeta. |
Gene disruption in chicken DT40 cells (POLQ, POLbeta, polq/polb double mutants); cell survival assays; in vitro BER activity assays on cell extracts; live-cell imaging of POLQ accumulation at laser-induced damage sites |
Molecular cell |
High |
17018297
|
| 2014 |
POLQ mediates an alternative end-joining (alt-EJ) pathway for DNA double-strand break repair that is Ku70-independent and requires POLQ's DNA polymerase activity. POLQ promotes end joining of DNA ends with long 3' single-stranded overhangs by its unique ability to extend DNA from minimally paired primers, generating insertions of base pairs at joins with microhomology to switch-region sequences. Loss of POLQ leads to increased Myc/IgH chromosome translocations, showing POLQ suppresses genomic instability at DSBs. |
Polq-null murine cell lines; cell-based DNA break end-joining assay with long 3' ssDNA overhang substrates; immunoglobulin class switch recombination assays; Ku70-independent assay; biochemical assays with purified human POLQ; chromosomal translocation analysis by PCR |
PLoS genetics |
High |
25275444
|
| 2004 |
The chaos1 missense mutation in mouse Polq causes spontaneous and induced chromosome instability (increased micronucleated erythrocytes). Chaos1 is confirmed as a Polq allele by BAC complementation and failed complementation with a Polq-null allele. Double homozygosity with Atm deficiency is synthetically lethal (90% neonatal death), with survivors showing synergistic growth retardation and chromosome instability, indicating that POLQ and ATM operate in distinct but partially compensatory DSB repair pathways. |
Mouse genetics: BAC complementation, allelic complementation test with gene-targeted Polq null; double-mutant (Polq/Atm) phenotypic analysis; micronucleus assay |
Molecular and cellular biology |
High |
15542845
|
| 2011 |
POLQ's non-polymerase domains retain significant function in tolerance to DSB-inducing agents (etoposide, gamma-irradiation): POLQ-null B cells are more sensitive than POLQ-polymerase-inactive (pol domain deleted) cells to these agents, while both are equally sensitive to agents repaired by the polymerase domain (MMC, cisplatin, UV). Class switch recombination is unaffected by loss of either form of POLQ. |
Gene targeting in CH12F3 B cells to generate POLQ-null and POLQ-polymerase-inactive lines; clonogenic survival assays with multiple DNA-damaging agents; class switch recombination assay |
Genes to cells |
Medium |
21883722
|
| 2016 |
In zebrafish embryos, POLQ-mediated alternative end joining (alt-EJ) is the essential and dominant pathway for repair of DSBs during early vertebrate development. Polq-mutant embryos cannot repair CRISPR/Cas9- or ionizing radiation-induced DSBs, fail to survive mutagenesis, and show dramatic differences in mutation profiles compared to wild-type. |
Zebrafish polq genetic mutants; CRISPR/Cas9-induced DSBs; ionizing radiation; survival assays; mutation spectrum analysis |
Cell reports |
Medium |
27149851
|
| 2017 |
POLQ substantially contributes to random integration of foreign DNA in human cells via a mechanism independent of NHEJ. Dual loss of POLQ and LIG4 (essential for NHEJ) abolishes random integration entirely, revealing that POLQ-mediated end joining is the sole homology-independent repair route for foreign DNA integration when NHEJ is absent. |
POLQ and LIG4 double-knockout human cells; gene targeting frequency assays; random integration frequency measurement |
Nature communications |
Medium |
28695890
|
| 2019 |
POLQ is required for MMEJ repair of DSBs generated by both endonucleases (I-SceI, Cas9) and Cas9 nickase-derived single-strand breaks that collapse at replication forks. POLQ deficiency causes sensitivity to topoisomerase inhibitors and ATR inhibitors that induce replication stress and fork collapse, placing POLQ in the response to replication-associated DSBs. |
POLQ-deficient human cancer cell lines; I-SceI and Cas9/Cas9-nickase DSB repair assays; clonogenic survival with topoisomerase inhibitors and ATR inhibitors |
The Journal of biological chemistry |
Medium |
30655289
|
| 2019 |
POLQ and RAD52 operate in distinct backup DSB repair pathways with different microhomology requirements: POLQ is important for repair events using 6 nt (but not ≥18 nt) flanking microhomologies and for oligonucleotide microhomology-templated (12–20 nt) repair events requiring nascent DNA synthesis, whereas RAD52 is important for longer (≥50 nt) repeat-mediated repair. Combined disruption of both causes additive hypersensitivity to cisplatin and synthetic reduction in replication fork restart velocity. |
Human U2OS cells with POLQ mutations (upstream of pol domain), RAD52 knockout, and combined disruption; defined DSB repair substrate assays; fork restart assay; clonogenic survival |
PLoS genetics |
Medium |
31381562
|
| 2022 |
POLQ seals post-replicative ssDNA gaps in BRCA1/2-deficient cells or upon PARP inhibitor treatment. Biochemically, the POLQ helicase activity promotes RPA displacement from ssDNA gaps while the polymerase activity fills in the gaps. POLQ also performs microhomology-mediated gap skipping (MMGS), generating deletions during gap repair that resemble genomic scars in POLQ-overexpressing cancers. |
POLQ-deficient cell lines with BRCA1/2 loss or PARP inhibitor treatment; ssDNA gap accumulation assay; biochemical reconstitution of RPA displacement and gap fill-in with POLQ helicase and polymerase domain activities; genomic scar analysis |
Molecular cell |
High |
36455556
|
| 2020 |
POLQ promotes end joining in cis at DSBs, limiting breaks available for interhomolog recombination (IHR) in trans. Depletion of POLQ causes a dramatic increase in IHR and in copy-neutral loss of heterozygosity (cnLOH) at CRISPR-Cas9-targeted DSBs in human cells. |
POLQ depletion in human cells; CRISPR-Cas9 targeted DSBs at both homologs; quantitative IHR and cnLOH frequency assays |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
32873648
|
| 2008 |
In C. elegans, polq-1 functions in a distinct ICL repair pathway that is dependent on brc-1 (CeBRCA1), separate from the Fanconi anemia-dependent pathway used by hel-308. Epistasis analysis places polq-1 and hel-308 in different DNA repair pathways. |
C. elegans polq-1 and hel-308 mutants; survival assays after ICL agent treatment; genetic epistasis analysis with Fanconi anemia pathway mutants and brc-1 |
DNA repair |
Medium |
18472307
|
| 2024 |
POLQ-mediated end-joining (TMEJ) is the primary mechanism generating structural variants (SVs) at common fragile sites (CFSs) in human cells under replication stress. SV junction formation increases 5-fold after G2-to-M-phase transition; neither SV formation nor CFS expression depend on mitotic DNA synthesis (MiDAS). POLQ inhibition reduces SV formation, placing POLQ as the principal driver of nonrecurrent SV formation at CFSs. |
Error-minimized capture sequencing of CFS DNA from human cell lines after aphidicolin treatment; DNA repair pathway inhibition (POLQ and others); cell cycle fractionation; analysis of tens of thousands of de novo SV junctions |
Nature communications |
Medium |
39505880
|
| 2023 |
POLQ inhibition in HR-deficient BRCA2-deficient pancreatic cancer cells is synthetically lethal and activates cGAS-STING signaling by enhancing cytosolic micronuclei formation, leading to increased CD8+ T cell infiltration in vivo. |
POLQ knockdown in human and murine HR-deficient PDAC models; synthetic lethality assay with BRCA1/2 and ATM mutations; micronuclei quantification; cGAS-STING signaling assay; in vivo syngeneic tumor model with CD8+ T cell quantification |
The Journal of clinical investigation |
Medium |
36976649
|
| 2023 |
In mouse embryonic stem cells, the RNA-binding protein DPPA5A promotes cryptic exon (CE) inclusion in Polq pre-mRNA, disrupting normal POLθ protein expression and suppressing MMEJ activity. Depletion of DPPA5A decreases CE inclusion in Polq, restores POLθ expression, and stimulates MMEJ activity. |
DPPA5A depletion in mouse ESCs; RT-PCR for CE inclusion in Polq; Western blot for POLθ protein; MMEJ activity assays; enforced DPPA5A expression in NIH3T3 cells |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
37459543
|
| 2025 |
HPV16 E6 oncoprotein stabilizes POLQ protein by activating the E3 ubiquitin ligase UBE3A/E6AP, which ubiquitinates and degrades RAD23A — a shuttle protein required for delivering polyubiquitinated POLQ to the proteasome. Loss of RAD23A phenocopies HPV16 E6 expression, leading to POLQ stabilization and increased MMEJ activity. This E6-UBE3A-RAD23A-POLQ axis promotes viral genome integration. |
Co-expression of HPV16 E6 in cells; Western blot for POLQ and RAD23A protein levels; UBE3A knockdown/knockout; RAD23A knockdown; MMEJ activity assays; viral integration assays; ubiquitination assays |
bioRxivpreprint |
Medium |
41357977
|
| 2025 |
SMARCB1 (a core BAF/SWI-SNF subunit) is required for maintaining POLQ protein levels by facilitating nuclear export of POLQ mRNA through interaction with the nuclear pore complex. Loss of SMARCB1 reduces POLQ protein, impairs MMEJ, and forces a compensatory hyper-dependence on the FA/BRCA pathway. |
SMARCB1-deficient rhabdoid tumor cell lines; Western blot for POLQ protein; POLQ mRNA nuclear export assay; nuclear pore complex interaction; MMEJ activity assay; synthetic lethality with FA/BRCA pathway inhibition |
bioRxivpreprint |
Low |
bio_10.1101_2025.11.20.689563
|
| 2025 |
EWSR1 is a splicing factor that promotes accurate splicing of POLQ pre-mRNA. The EWS-FLI1 fusion oncoprotein, or loss of EWSR1, causes exon 25 skipping of the POLQ transcript, decreased POLθ protein expression, and impaired MMEJ activity in Ewing sarcoma cells. Knockdown of EWS-FLI1 restores POLθ expression and increases MMEJ activity. |
Ewing sarcoma cell lines with EWS-FLI1 expression or EWSR1 loss; RT-PCR for POLQ exon 25 skipping; Western blot for POLθ; MMEJ activity assay; EWS-FLI1 knockdown rescue experiments; POLQ mitotic foci quantification |
bioRxivpreprint |
Medium |
bio_10.1101_2025.05.06.651696
|
| 2025 |
POLQ variant forms (patient-derived melanoma variants) show decreased efficiency during bypass and extension of cyclobutane pyrimidine dimers (CPDs) compared to wild-type, but two of three tested variants nonetheless protect against UV-induced cell death, dissociating lesion bypass efficiency from cell survival. |
In vitro primer extension assays with purified recombinant POLQ variants on CPD-containing templates; cell survival assays after UV irradiation with POLQ variant expression |
bioRxivpreprint |
Low |
41357977
|