Affinage

PMVK

Phosphomevalonate kinase · UniProt Q15126

Length
192 aa
Mass
22.0 kDa
Annotated
2026-06-10
37 papers in source corpus 4 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PMVK encodes a cytoplasmic phosphomevalonate kinase that catalyzes the conversion of mevalonate 5-phosphate to mevalonate 5-diphosphate within the mevalonate biosynthesis pathway (PMID:27052676). Loss-of-function mutations cause porokeratosis: heterozygous germline variants act as a first hit that, combined with postzygotic somatic second hits producing biallelic loss in keratinocyte precursors, underlie disseminated superficial and linear forms of the disease (PMID:27052676, PMID:30942823). PMVK deficiency disrupts keratinocyte differentiation, with lesional tissue showing apoptosis and incomplete differentiation, and a pathogenic nonsense variant disturbs the protein's subcellular localization, solubility, and expression (PMID:27052676). A homozygous PMVK variant has been linked to a hyper-IgD-like autoinflammatory phenotype with elevated IL-1β production, connecting impaired mevalonate-pathway flux to inflammasome-driven cytokine secretion (PMID:38018277). In Drosophila, the Pmvk ortholog supports axon regrowth in mushroom body γ-Kenyon cells acting through the mevalonate pathway and the Rheb/TOR axis.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2016 Medium

    Established PMVK as a porokeratosis gene and connected loss of this mevalonate-pathway enzyme to disrupted keratinocyte biology, answering whether PMVK dysfunction has a cell-autonomous skin phenotype.

    Evidence Whole-exome sequencing with co-segregation, HaCaT expression studies measuring localization/solubility/expression, and histology of lesional tissue

    PMID:27052676

    Open questions at the time
    • No in vitro enzymatic reconstitution to confirm catalytic loss
    • Mechanism linking PMVK loss to keratinocyte apoptosis and differentiation defect not defined
    • Single-lab cell model
  2. 2019 Medium

    Defined the genetic mechanism of PMVK-driven porokeratosis as a two-hit process, showing germline heterozygous loss combined with somatic second hits in keratinocyte precursors drives lesion formation.

    Evidence Paired whole-exome sequencing of affected skin versus blood/saliva identifying copy-neutral LOH and second somatic mutations in three independent cases

    PMID:30942823

    Open questions at the time
    • No enzymatic reconstitution of mutant protein
    • Does not explain how biallelic loss perturbs differentiation at the molecular level
  3. 2023 Low

    Extended the PMVK phenotypic spectrum to autoinflammation, linking enzymatic dysfunction to elevated IL-1β and inflammasome-driven cytokine secretion.

    Evidence Single-patient mononuclear cell IL-1β ELISA with computational protein modeling of a homozygous variant

    PMID:38018277

    Open questions at the time
    • Single patient with cytokine assay only, no enzymatic reconstitution
    • Modeling of activity defect is computational
    • Pathway from reduced mevalonate flux to inflammasome activation not mechanistically traced
  4. 2023 Low

    Identified an additional heterozygous missense variant in familial porokeratosis, reinforcing the genetic association with structural predictions of impaired function.

    Evidence Sanger sequencing, PCR-RFLP population screening, and in silico structural modeling

    PMID:37315547

    Open questions at the time
    • Computational structural prediction only, no experimental functional validation
    • No demonstration of enzymatic or cellular consequence
  5. 2025 Medium

    Implicated PMVK and the mevalonate pathway in neuronal axon regrowth, placing the enzyme upstream of the Rheb/TOR axis.

    Evidence Targeted loss-of-function screen, genetic epistasis with Rheb/TOR, and rescue experiments in Drosophila γ-Kenyon cells (preprint)

    Open questions at the time
    • Demonstrated in Drosophila ortholog only, not validated in mammals
    • Single-lab preprint
    • Molecular link between mevalonate products and Rheb activation not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • Direct biochemical confirmation of how disease variants impair phosphomevalonate kinase catalytic activity, and how reduced mevalonate-pathway flux mechanistically translates into keratinocyte differentiation defects and inflammasome activation, remains unestablished.
  • No in vitro reconstitution of mutant enzyme kinetics
  • Downstream metabolite changes in patient tissue uncharacterized
  • Mammalian validation of the axon-regrowth role absent

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 1 GO:0140657 ATP-dependent activity 1
Localization
GO:0005829 cytosol 1
Pathway
R-HSA-1430728 Metabolism 2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 Loss-of-function nonsense mutation (c.412C>T, p.Arg138*) in PMVK, which encodes a cytoplasmic enzyme catalyzing conversion of mevalonate 5-phosphate to mevalonate 5-diphosphate in the mevalonate pathway, causes autosomal dominant disseminated superficial porokeratosis (DSP). In HaCaT cell models, this variant disturbed subcellular localization, expression, and solubility of PMVK. Lesional tissue showed apparent apoptosis and incomplete differentiation of keratinocytes in PMVK-deficient tissue. Whole-exome sequencing, co-segregation analysis, HaCaT cell expression studies (subcellular localization, solubility, expression level), histological analysis of lesional tissue Scientific reports Medium 27052676
2019 Second-hit postzygotic somatic mutations in PMVK (including germline heterozygous mutations c.329G>A and c.79G>T plus somatic second hits) cause linear porokeratosis, establishing PMVK as a gene in the mevalonate biosynthesis pathway whose biallelic loss-of-function in keratinocyte precursors underlies this skin disorder. Paired whole-exome sequencing of affected skin and blood/saliva samples; identification of somatic copy-neutral loss of heterozygosity and second somatic mutations in lesional skin JAMA dermatology Medium 30942823
2023 A novel homozygous PMVK variant (c.398C>T, p.Ala133Val) causes a hyper-IgD syndrome-like autoinflammatory phenotype. Mononuclear cells from the patient showed significantly elevated IL-1β production, linking PMVK enzymatic dysfunction in the mevalonate pathway to enhanced inflammasome-driven cytokine secretion. Protein modeling suggested defects in PMVK enzyme activity. Patient mononuclear cell IL-1β secretion assay (ELISA), protein structural modeling, clinical phenotyping Clinical genetics Low 38018277
2023 A novel heterozygous missense variant c.207G>T (p.Lys69Asn) in PMVK causes familial porokeratosis. In silico structural analysis indicated the variant changes the length of an α-helix and hydrogen bond pattern in the PMVK protein, predicted to impair function. Sanger sequencing, PCR-RFLP for population frequency, in silico structural modeling Human heredity Low 37315547
2025 Drosophila Pmvk (ortholog of human PMVK) plays a crucial role in axon regrowth in mushroom body γ-Kenyon cells by acting within the mevalonate pathway. Targeted loss-of-function of Pmvk impaired axon regrowth, and other enzymes in the mevalonate pathway were also required, indicating the entire pathway is essential. Genetic analyses suggest Pmvk controls axon regrowth via Rheb, an effector of the TOR pathway. Targeted loss-of-function screen in Drosophila, genetic epistasis with Rheb/TOR pathway, rescue experiments, developmental transcriptomics bioRxivpreprint Medium

Source papers

Stage 0 corpus · 37 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 Phosphorylation of the conserved transcription factor ATF-7 by PMK-1 p38 MAPK regulates innate immunity in Caenorhabditis elegans. PLoS genetics 152 20369020
2012 Oxidative stress-related PMK-1 P38 MAPK activation as a mechanism for toxicity of silver nanoparticles to reproduction in the nematode Caenorhabditis elegans. Environmental toxicology and chemistry 115 22128035
2010 A conserved PMK-1/p38 MAPK is required in caenorhabditis elegans tissue-specific immune response to Yersinia pestis infection. The Journal of biological chemistry 110 20133945
2019 Second-Hit, Postzygotic PMVK and MVD Mutations in Linear Porokeratosis. JAMA dermatology 59 30942823
2020 Metformin promotes innate immunity through a conserved PMK-1/p38 MAPK pathway. Virulence 55 31851866
2001 Isolation and characterization of pmk-(1-3): three p38 homologs in Caenorhabditis elegans. Molecular cell biology research communications : MCBRC 47 11703092
2022 Sanguinarine promotes healthspan and innate immunity through a conserved mechanism of ROS-mediated PMK-1/SKN-1 activation. iScience 46 35243236
2016 DLK-1, SEK-3 and PMK-3 Are Required for the Life Extension Induced by Mitochondrial Bioenergetic Disruption in C. elegans. PLoS genetics 44 27420916
2009 The ubiquitin ligase RPM-1 and the p38 MAPK PMK-3 regulate AMPA receptor trafficking. PloS one 44 19172179
2012 The p38 MAPK PMK-1 shows heat-induced nuclear translocation, supports chaperone expression, and affects the heat tolerance of Caenorhabditis elegans. Cell stress & chaperones 42 23117578
2013 Components of the cultivated red seaweed Chondrus crispus enhance the immune response of Caenorhabditis elegans to Pseudomonas aeruginosa through the pmk-1, daf-2/daf-16, and skn-1 pathways. Applied and environmental microbiology 40 24056462
2015 Role of PMK-1/p38 MAPK defense in Caenorhabditis elegans against Klebsiella pneumoniae infection during host-pathogen interaction. Pathogens and disease 35 25819035
2015 Tissue expression pattern of PMK-2 p38 MAPK is established by the miR-58 family in C. elegans. PLoS genetics 30 25671546
2016 Loss-of-function Mutation in PMVK Causes Autosomal Dominant Disseminated Superficial Porokeratosis. Scientific reports 28 27052676
2017 PMK-1 p38 MAPK promotes cadmium stress resistance, the expression of SKN-1/Nrf and DAF-16 target genes, and protein biosynthesis in Caenorhabditis elegans. Molecular genetics and genomics : MGG 27 28766017
2014 Protective effects of garlic extract, PMK-S005, against nonsteroidal anti-inflammatory drugs-induced acute gastric damage in rats. Digestive diseases and sciences 27 25283375
2016 Role of GATA transcription factor ELT-2 and p38 MAPK PMK-1 in recovery from acute P. aeruginosa infection in C. elegans. Virulence 25 27600703
2023 The homeodomain transcription factor CEH-37 regulates PMK-1/p38 MAPK pathway to protect against intestinal infection via the phosphatase VHP-1. Cellular and molecular life sciences : CMLS 19 37796333
2022 Somatic PMK-1/p38 signaling links environmental stress to germ cell apoptosis and heritable euploidy. Nature communications 18 35121747
2016 Gastroprotective Effects of PMK-S005 against Ethanol-Induced Acute Gastric Damage in Rats. Gut and liver 14 26347516
2021 Loss of muscleblind splicing factor shortens Caenorhabditis elegans lifespan by reducing the activity of p38 MAPK/PMK-1 and transcription factors ATF-7 and Nrf/SKN-1. Genetics 11 34849877
2018 Cloning and Expression of the Organophosphate Pesticide-Degrading α-β Hydrolase Gene in Plasmid pMK-07 to Confer Cross-Resistance to Antibiotics. BioMed research international 10 29862253
2023 The bZIP transcription factor BATF3/ZIP-10 suppresses innate immunity by attenuating PMK-1/p38 signaling. International immunology 8 36409527
2022 The p38 MAPK/PMK-1 Pathway Is Required for Resistance to Nocardia farcinica Infection in Caenorhabditis elegance. Pathogens (Basel, Switzerland) 7 36297128
2023 A novel homozygous variant in PMVK is associated with enhanced IL1β secretion and a hyper-IgD syndrome-like phenotype. Clinical genetics 6 38018277
2020 Ultraviolet light activates PMK-1/p38 MAPK signaling via MOM-4 and JKK-1 in Caenorhabditis elegans. Toxicology research 4 32905206
2023 A Novel PMVK Variant Associated with Familial Porokeratosis. Human heredity 3 37315547
2016 PMK-S005 Alleviates Age-Related Gastric Acid Secretion, Inflammation, and Oxidative Status in the Rat Stomach. Gut and liver 3 27172930
2025 Modulation of Pseudomonas aeruginosa-induced avoidance behavior by Shen Qi pills via mitogen-activated protein kinase PMK-1 and forkhead box protein O DAF-16 in Caenorhabditis elegans. Phytomedicine : international journal of phytotherapy and phytopharmacology 2 40049101
2025 Distinct Effects of PFOS and OBS on Neurotoxicity via PMK-1 Mediated Pathway in Caenorhabditis elegans. Toxics 2 40863938
2025 Negative Effect of Gst-35 on the Health Span of Caenorhabditis elegans Through Lysosomal Dysfunction via the Pmk-1 and Skr Genes. Aging cell 1 39945496
2025 Hyperoside extends lifespan in Caenorhabditis elegans through SEK-1/PMK-1/SKN-1 pathway. Biogerontology 1 40973886
2025 Phytochemical-rich Eucommia ulmoides leaf extract extends healthspan in Caenorhabditis elegans via the pmk-1/p38 MAPK pathway and mitochondrial homeostasis. Frontiers in nutrition 1 41220704
2025 Ethyl Acetate Extract of Cynanchi Auriculati Radix Inhibits LPS-Induced M1 Polarization of RAW264.7 Macrophages and Prolongs the Lifespan of Caenorhabditis elegans by Regulating NF-κB and PMK-1/SKN-1 Signaling Pathways. Current issues in molecular biology 1 41296439
2026 Bushen Huoxue decoction alleviates bisphenol a-induced infertility through the PMK-1 mitogen-activated protein kinases signaling pathway and downstream mitochondrial unfolded protein response in Caenorhabditis elegans. Frontiers in pharmacology 0 41625340
2026 Cycloneolitsol prolongs the lifespan of Caenorhabditis elegans by SEK-1/PMK-1/SKN-1 pathway and exerts anti-inflammatory effects by NF-κB pathway. Biogerontology 0 41840248
2026 MAPK/PMK-1 innate immune signaling protects the nematode Caenorhabditis elegans from increased intestinal colonization in an animal host-pathogen model in space. NPJ microgravity 0 42091892

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