Affinage

PLCB3

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 · UniProt Q01970

Length
1234 aa
Mass
138.8 kDa
Annotated
2026-04-28
41 papers in source corpus 14 papers cited in narrative 14 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLCB3 is a ubiquitously expressed phosphoinositide-specific phospholipase C that hydrolyzes PIP2 to generate IP3 and DAG downstream of heterotrimeric G proteins coupled to GPCRs and immune receptors, thereby controlling intracellular calcium mobilization, PKC activation, and NF-κB signaling across diverse cell types (PMID:7607669, PMID:21411730, PMID:29668297). In mast cells, PLCB3 functions as a scaffold that constitutively associates with FcεRI, Lyn, and SHP-1; upon receptor activation it recruits SHP-1 to dephosphorylate Lyn, tuning MAPK-dependent cytokine production and STAT5-driven mast cell expansion, such that Plcb3 deficiency causes spontaneous atopic dermatitis–like disease (PMID:21683628, PMID:24412367). Ser1105 serves as a convergent phosphorylation node for PKA and PKC, with differential dephosphorylation by calcineurin versus PP1/PP2A enabling cross-talk between cAMP and Gq pathways in myometrial cells (PMID:18322273). A homozygous destabilizing missense variant (p.Ala878Ser) causes elevated PIP2, F-actin disorganization, and spondylometaphyseal dysplasia with corneal dystrophy, while PLCB3 protein stability is maintained by OSBPL2-mediated protection from ubiquitin-dependent degradation (PMID:29122926, PMID:38701954).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1995 High

    Establishing the basic identity of PLCB3 as a ubiquitously expressed, housekeeping-type phospholipase C gene answered the foundational question of its genomic organization and tissue distribution.

    Evidence cDNA/genomic sequencing, Northern blotting, and primer extension in human tissues

    PMID:7607669

    Open questions at the time
    • No enzymatic kinetics or substrate specificity data provided
    • No upstream activating receptors identified
    • Protein-level expression and subcellular localization not characterized
  2. 1999 Medium

    Reconstitution of PLCB3 in neuroendocrine tumor cells deficient for the protein revealed a growth-suppressive function, raising the question of whether PLCB3 acts as a tumor suppressor beyond its canonical lipase activity.

    Evidence PLCB3 cDNA transfection with thymidine incorporation assays and nude mouse xenografts

    PMID:10359076

    Open questions at the time
    • Mechanism of growth suppression not defined
    • Downstream transcriptional changes identified by differential display (PMID:11178984) lack validation
    • Relevance to human neuroendocrine tumors in situ not established
  3. 2006 Medium

    Demonstrating that intracellular PLCB3-specific antibody blocked S1P-induced smooth muscle contraction placed PLCB3 downstream of both Gi and Gq pathways and upstream of PKCε/MEK/ERK in a contractile signaling cascade.

    Evidence Intracellular antibody injection in permeabilized cat esophageal smooth muscle cells with pertussis toxin and kinase inhibitors

    PMID:16511346

    Open questions at the time
    • Antibody specificity for PLCB3 versus other PLC isoforms not independently validated
    • Single species/tissue system
    • Direct G-protein coupling not biochemically demonstrated
  4. 2008 High

    Identification of Ser1105 as a convergent PKA/PKC phosphorylation site with differential phosphatase control resolved how cAMP and Gq/oxytocin pathways cross-talk through PLCB3 in myometrial cells.

    Evidence S1105A mutagenesis, shRNA knockdown, pharmacological phosphatase and kinase inhibition, calcium imaging in human myometrial cells

    PMID:18322273

    Open questions at the time
    • Structural basis for how S1105 phosphorylation inhibits catalytic activity unknown
    • In vivo relevance to labor/uterine contractility not tested
    • Whether other PLC-β isoforms are similarly regulated at homologous sites not addressed
  5. 2011 High

    Discovery that PLCB3 constitutively scaffolds FcεRI, Lyn, and SHP-1 in mast cells — and that Plcb3 knockout phenocopies SHP-1 loss for cytokine production — established a non-canonical adaptor/scaffold function independent of lipase activity per se.

    Evidence Plcb3−/− mouse, reciprocal co-immunoprecipitation, Lyn kinase assays, anaphylaxis models, cytokine ELISA

    PMID:21683628

    Open questions at the time
    • Whether the scaffold and lipase functions are separable (e.g., catalytic-dead knock-in) was not tested
    • Structural basis for the quaternary PLCB3–FcεRI–Lyn–SHP-1 complex unknown
    • Contribution of individual PLCB3 domains to complex assembly not mapped
  6. 2011 High

    Parallel work showed PLCB3 mediates nucleotide-stimulated Ca²⁺/PKC/NF-κB signaling that potentiates TLR-driven IL-8 release in bronchial epithelial cells, extending its functional role to innate immune amplification in the airway.

    Evidence siRNA knockdown in CF bronchial epithelial cells with calcium, PKC, NF-κB reporter, and IL-8 readouts

    PMID:21411730

    Open questions at the time
    • Receptor identity (P2Y subtype) upstream of PLCB3 not definitively assigned
    • In vivo relevance in CF lung disease not tested
  7. 2014 High

    Epistasis experiments in Plcb3-deficient mice showed that PLCB3 restrains STAT5 activity via SHP-1, and that mast cell-specific Stat5 deletion rescues dermatitis, establishing the PLCB3→SHP-1⊣STAT5 axis as the driver of mast cell expansion and atopic skin disease.

    Evidence Plcb3−/− crossed with mast cell-specific Stat5 and Shp1 conditional knockouts, allergen challenge

    PMID:24412367

    Open questions at the time
    • How PLCB3 regulates periostin in fibroblasts and TSLP in keratinocytes mechanistically unclear
    • Whether lipase activity is required for the STAT5 regulatory circuit not resolved
  8. 2017 High

    Identification of a homozygous destabilizing PLCB3 variant (p.Ala878Ser) in patients with spondylometaphyseal dysplasia with corneal dystrophy demonstrated that PLCB3 loss-of-function elevates PIP2, disrupts F-actin, and causes a Mendelian skeletal syndrome.

    Evidence Whole exome sequencing, homozygosity mapping, PIP2 measurement and F-actin staining in patient fibroblasts

    PMID:29122926

    Open questions at the time
    • No animal model recapitulating the skeletal phenotype
    • How elevated PIP2 specifically leads to chondrocyte/corneal pathology not defined
    • Whether residual enzymatic activity exists with the A878S variant not quantified
  9. 2018 High

    Systematic active-site mutagenesis confirmed that PLCB3 catalytic activity is required for agonist-induced Ca²⁺ release, PKCβ activation, and IL-8 production, ruling out a purely scaffold-based mechanism in epithelial innate immunity.

    Evidence Catalytic-dead and activation-deficient mutants with Ca²⁺ imaging, PKC and IL-8 assays in CF bronchial epithelial cells

    PMID:29668297

    Open questions at the time
    • S845L variant structural consequences not resolved crystallographically
    • Whether scaffold and catalytic functions both contribute in mast cells remains untested
  10. 2024 Medium

    Discovery that OSBPL2 directly binds and protects PLCB3 from ubiquitin-dependent proteasomal degradation revealed a post-translational stability mechanism, explaining how OSBPL2 loss-of-function causes keratinocyte hyperkeratosis via PLCB3 depletion.

    Evidence Reciprocal co-immunoprecipitation, ubiquitylation assays, patient fibroblast/keratinocyte studies

    PMID:38701954

    Open questions at the time
    • E3 ubiquitin ligase targeting PLCB3 not identified
    • Ubiquitylation sites on PLCB3 not mapped
    • Whether OSBPL2 regulation of PLCB3 is relevant in non-epidermal tissues unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include whether the scaffold and lipase functions of PLCB3 are separable in vivo, the identity of the E3 ligase controlling PLCB3 turnover, the structural basis for Ser1105 phospho-regulation, and the mechanism by which PIP2 accumulation drives skeletal dysplasia.
  • No catalytic-dead knock-in mouse to dissect scaffold versus enzymatic roles
  • E3 ligase for PLCB3 ubiquitylation unknown
  • No high-resolution structure of full-length PLCB3 in a signaling complex

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016787 hydrolase activity 5 GO:0008289 lipid binding 2 GO:0060090 molecular adaptor activity 2
Localization
GO:0005829 cytosol 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 4 R-HSA-168256 Immune System 4 R-HSA-392499 Metabolism of proteins 1
Complex memberships
FcεRI–Lyn–SHP-1–PLCβ3 signaling complex

Evidence

Reading pass · 14 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1995 The human PLCB3 gene encodes a 1234-amino acid phosphoinositide-specific phospholipase C beta 3 protein with a 4.4-kb transcript expressed in all tissues. The gene contains 31 exons spanning ~15 kb, with a GC-rich promoter lacking TATA/CAAT boxes (housekeeping promoter type), and the transcription initiation site was mapped 328-321 bp upstream of the translation start. cDNA sequencing, genomic sequencing of cosmid subclones, Northern blotting, primer extension for transcription start site Genomics High 7607669
2011 PLC-β3 constitutively interacts with FcεRI, Lyn, and SHP-1 in mast cells. Upon FcεRI stimulation, PLC-β3 recruits SHP-1 which dephosphorylates Lyn at Tyr396 (inhibitory site) to suppress Lyn activity, thereby reducing negative regulation and enabling MAPK-dependent cytokine production. Loss of Plcb3 reduces cytokine production but not degranulation, and phenocopies SHP-1 mutant mast cells. Plcb3(-/-) mouse model, co-immunoprecipitation, kinase activity assays, anaphylaxis models, cytokine ELISA, MAPK phosphorylation assays Immunity High 21683628
2014 PLC-β3 deficiency in mast cells leads to increased STAT5 activity and reduced SHP-1 activity, causing mast cell expansion and spontaneous AD-like skin lesions. PLC-β3 also regulates periostin expression in fibroblasts and TSLP expression in keratinocytes. Mast cell-specific Stat5 deletion rescues, while Shp1 deletion exacerbates, allergen-induced dermatitis in Plcb3(-/-) mice. Plcb3(-/-) mouse model, mast cell-specific conditional knockouts (Stat5, Shp1), allergen challenge models, Western blotting for phospho-STAT5 Cell reports High 24412367
2011 In bronchial epithelial cells, PLCB3 mediates extracellular nucleotide-dependent intracellular calcium signaling that activates protein kinase Cα and Cβ and NF-κB p65, potentiating Toll-like receptor signaling to drive IL-8 release in response to Pseudomonas aeruginosa. Silencing PLCB3 attenuates this inflammatory cascade. siRNA knockdown in CF bronchial epithelial cells, calcium signaling assays, PKC activity assays, NF-κB reporter assays, IL-8 ELISA Journal of immunology High 21411730
2018 The PLCB3-S845L variant (c.2534C>T) is a loss-of-function mutation that impairs agonist-induced Ca2+ release from the ER, reduces conventional PKCβ activation, and diminishes IL-8 release in CF bronchial epithelial cells. Synthetic catalytic-dead and activation-deficient PLCB3 mutants confirmed the requirement for enzymatic activity. Site-directed mutagenesis, Ca2+ imaging, PKC activation assays, IL-8 ELISA in CF bronchial epithelial cells exposed to P. aeruginosa American journal of respiratory cell and molecular biology High 29668297
2017 A homozygous missense variant (c.2632G>T; p.Ala878Ser) in PLCB3 disrupts the Ha2' element of the proximal C-terminal domain, destabilizing PLCB3 and causing elevated PIP2 levels in patient fibroblasts, leading to F-actin cytoskeleton disorganization and a new form of spondylometaphyseal dysplasia with corneal dystrophy. Whole exome sequencing, homozygosity mapping, patient fibroblast studies (PIP2 measurement, F-actin staining), protein stability assays Journal of medical genetics High 29122926
2008 PLCB3 Ser1105 (S1105) is a convergent phosphorylation site for multiple kinases in human myometrial cells. PKA pathway (via cAMP/PRKA) and PKC (via oxytocin/Gq) both phosphorylate S1105; PKA-mediated phosphorylation inhibits oxytocin-stimulated phosphatidylinositol turnover in a S1105-dependent manner, demonstrated by S1105A mutant. PP2B/calcineurin preferentially dephosphorylates PKA-phosphorylated S1105 while PP1/PP2A acts on PKC-phosphorylated S1105. PLCB3 shRNA significantly attenuated oxytocin-stimulated intracellular Ca2+ increases. shRNA knockdown, S1105A mutagenesis, phosphatase inhibitors (cypermethrin, okadaic acid), kinase inhibitors, calcium imaging, PI turnover assays in immortalized and primary human myometrial cells Biology of reproduction High 18322273
2006 In cat esophageal smooth muscle cells, S1P-induced contraction is mediated through S1P2 receptors coupled to PTX-sensitive Gi2 and PTX-insensitive Gq/Gβγ proteins, leading to PLCβ3 activation. Intracellular application of PLCβ3-specific antibody inhibited contraction, placing PLCβ3 upstream of PKCε and MEK/ERK in the S1P contractile signaling pathway. Intracellular antibody injection into permeabilized smooth muscle cells, pertussis toxin treatment, PLC inhibitor U73122, PKC and MEK inhibitors, contraction assays Molecules and cells Medium 16511346
2011 PLCβ3 (PLCB3) specifically mediates LH-induced differentiation of bovine granulosa cells. PLCB3 is upregulated in ovulatory-size follicles, predominantly cytoplasmic in these cells, and RNAi-mediated PLCB3 knockdown reduced LH-induced IP turnover and transcriptional upregulation of prostaglandin-endoperoxide synthase 2 (PTGS2), while suppressing LH-induced downregulation of aromatase and estradiol production, without affecting cAMP responses. RNAi knockdown in primary bovine granulosa cells, inositol phosphate turnover assay, RT-PCR, estradiol measurement, cAMP assay, immunofluorescence localization Endocrinology Medium 21586561
1999 Transfection of PLCB3 into neuroendocrine tumor cell lines with low/absent PLCB3 expression suppressed growth in vitro (reduced [3H]thymidine incorporation) and reduced tumorigenicity in nude mice xenografts, with decreased Ki-67+ proliferating cells, indicating a tumor suppressor function for PLCB3 in neuroendocrine cells. PLCB3 cDNA transfection, [3H]thymidine incorporation, cell counting, nude mouse xenografts, Ki-67 immunostaining FEBS letters Medium 10359076
2001 Transfection of PLCB3 into BON-1 neuroendocrine tumor cells altered gene expression, inducing hMSH3 (mismatch repair protein 3) and TIS/MA-3 (topoisomerase suppressor/apoptosis gene) mRNAs while suppressing S100A3 and Chromogranin A, suggesting these downstream gene expression changes contribute to PLCB3-mediated tumor suppression. PLCB3 cDNA transfection, RT-differential cDNA display, sequence identification of differentially expressed transcripts Biochemical and biophysical research communications Low 11178984
2024 OSBPL2 directly interacts with PLCB3 and inhibits ubiquitylation of PLCB3, thereby stabilizing it. OSBPL2 loss-of-function variants lead to enhanced ubiquitination and proteasomal degradation of PLCB3, resulting in epidermal hyperkeratosis with aberrant keratinocyte proliferation and delayed terminal differentiation. Co-immunoprecipitation (OSBPL2-PLCB3 interaction), ubiquitylation assays, patient fibroblast/keratinocyte studies, exome sequencing Biochimica et biophysica acta. Molecular basis of disease Medium 38701954
2022 Exosomal miR-24-3p from umbilical cord mesenchymal stem cells suppresses Plcb3 expression and NF-κB pathway activation in macrophages, promoting M2 polarization. RNA-seq identified Plcb3 as a key gene in macrophage polarization, and miR-24-3p overexpression or UMSC-Exo treatment reduced Plcb3 levels to enhance M2 polarization. RNA sequencing, miR-24-3p overexpression, UMSC-Exo treatment, macrophage polarization assays, Western blotting for NF-κB pathway Advanced biology Medium 35818695
2024 PLCB3 knockdown in colorectal cancer cells inhibits CRC cell proliferation, migration, and invasion. Cetuximab treatment reduces β-catenin and PLCB3 expression while increasing E-cadherin, and combined application of a Wnt activator with PLCB3 modulation affects cetuximab efficacy, placing PLCB3 as a modulator of Wnt/β-catenin signaling in CRC. siRNA knockdown, Western blotting for β-catenin/E-cadherin/PLCB3, proliferation/migration/invasion assays, Wnt activator (IM12) rescue experiments Scientific reports Low 38724565

Source papers

Stage 0 corpus · 41 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 The PRKAA1/AMPKα1 pathway triggers autophagy during CSF1-induced human monocyte differentiation and is a potential target in CMML. Autophagy 88 26029847
2014 Critical role for mast cell Stat5 activity in skin inflammation. Cell reports 75 24412367
2016 CAPE suppresses migration and invasion of prostate cancer cells via activation of non-canonical Wnt signaling. Oncotarget 43 27191743
2013 Contribution of genetic and epigenetic mechanisms to Wnt pathway activity in prevalent skeletal disorders. Gene 39 24096177
2011 Phospholipase C-β3 is a key modulator of IL-8 expression in cystic fibrosis bronchial epithelial cells. Journal of immunology (Baltimore, Md. : 1950) 39 21411730
2011 Phospholipase C-β3 regulates FcɛRI-mediated mast cell activation by recruiting the protein phosphatase SHP-1. Immunity 35 21683628
2017 Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosis. PloS one 32 28453527
2015 Pathway Analysis Based on a Genome-Wide Association Study of Polycystic Ovary Syndrome. PloS one 32 26308735
2022 Human Umbilical Cord Mesenchymal Stem Cell-Derived Exosomes Attenuate Myocardial Infarction Injury via miR-24-3p-Promoted M2 Macrophage Polarization. Advanced biology 28 35818695
1997 Construction of a 1.2-Mb sequence-ready contig of chromosome 11q13 encompassing the multiple endocrine neoplasia type 1 (MEN1) gene. The European Consortium on MEN1. Genomics 28 9286704
1996 Isolation and characterization of a novel gene close to the human phosphoinositide-specific phospholipase C beta 3 gene on chromosomal region 11q13. Genomics 24 8838322
1995 Genomic organization and complete cDNA sequence of the human phosphoinositide-specific phospholipase C beta 3 gene (PLCB3). Genomics 21 7607669
2014 Ovarian superstimulation using FSH combined with equine chorionic gonadotropin (eCG) upregulates mRNA-encoding proteins involved with LH receptor intracellular signaling in granulosa cells from Nelore cows. Theriogenology 17 25219847
2006 Sphingosine 1-phosphate-induced signal transduction in cat esophagus smooth muscle cells. Molecules and cells 16 16511346
2008 Multiple signals regulate phospholipase CBeta3 in human myometrial cells. Biology of reproduction 15 18322273
2001 Differentially expressed cDNAs in PLCbeta3-induced tumor suppression in a human endocrine pancreatic tumor cell line: activation of the human mismatch repair protein 3 gene. Biochemical and biophysical research communications 15 11178984
2021 iTRAQ-based proteomic analysis of the molecular mechanisms and downstream effects of fatty acid synthase in osteosarcoma cells. Journal of clinical laboratory analysis 14 33405298
2018 PLCB3 Loss of Function Reduces Pseudomonas aeruginosa-Dependent IL-8 Release in Cystic Fibrosis. American journal of respiratory cell and molecular biology 14 29668297
2011 Phospholipase Cβ3 mediates LH-induced granulosa cell differentiation. Endocrinology 14 21586561
2015 Effect evaluation of cisplatin-gemcitabine combination chemotherapy for advanced non-small cell lung cancer patients using microarray data. European review for medical and pharmacological sciences 13 25753874
1997 Exclusion of the phosphoinositide-specific phospholipase C beta 3 (PLCB3) gene as a candidate for multiple endocrine neoplasia type 1. Human genetics 11 9003510
1999 Suppression of the neoplastic phenotype by transfection of phospholipase C beta 3 to neuroendocrine tumor cells. FEBS letters 10 10359076
2022 The genetic architecture of blood pressure variability: A genome-wide association study of 9370 participants from UK Biobank. Journal of clinical hypertension (Greenwich, Conn.) 9 35942506
1995 Localization of the human phosphatidylinositol-specific phospholipase c beta 3 gene (PLCB3) within chromosome band 11q13. Genomics 9 7789993
2025 Tibial cortex transverse transport surgery improves wound healing in patients with severe type 2 DFUs by activating a systemic immune response: a cross-sectional study. International journal of surgery (London, England) 8 38954658
2022 Insulin-like growth factor-1 inhibits apoptosis of rat gastric smooth muscle cells under high glucose condition via adenosine monophosphate-activated protein kinase (AMPK) pathway. Folia histochemica et cytobiologica 8 35156189
2017 Defect in phosphoinositide signalling through a homozygous variant in PLCB3 causes a new form of spondylometaphyseal dysplasia with corneal dystrophy. Journal of medical genetics 8 29122926
2003 In situ RNA-RNA hybridisation of phospholipase C beta 3 shows lack of expression in neuroendocrine tumours. Anticancer research 8 12894496
2003 The ichq mutant mouse, a model for the human skin disorder harlequin ichthyosis: mapping, keratinocyte culture, and consideration of candidate genes involved in epidermal growth regulation. Experimental dermatology 7 12823437
2019 Is MYND Domain-Mediated Assembly of SMYD3 Complexes Involved in Calcium Dependent Signaling? Frontiers in molecular biosciences 6 31737645
2016 Expression of inflammation/pain-related genes in the dorsal root ganglion following disc puncture in rats. Journal of orthopaedic surgery (Hong Kong) 6 27122524
2024 Fine-mapping genomic loci refines bipolar disorder risk genes. medRxiv : the preprint server for health sciences 5 38405768
2018 A Genome-Wide Linkage Study for Chronic Obstructive Pulmonary Disease in a Dutch Genetic Isolate Identifies Novel Rare Candidate Variants. Frontiers in genetics 5 29725345
2025 First Indonesian Nasopharyngeal Cancer Whole Epigenome Sequencing Identify Tumour Suppressor CpG Methylation. Biologics : targets & therapy 4 39802100
1995 Assignment of the mouse homologue of a human MEN1 candidate gene, phospholipase C-beta 3 (Plcb3), to chromosome region 19B by FISH. Cytogenetics and cell genetics 4 7587389
2024 Cetuximab inhibits colorectal cancer development through inactivating the Wnt/β-catenin pathway and modulating PLCB3 expression. Scientific reports 3 38724565
2023 Illuminating (HTLV-1)-induced adult T-cell leukemia/lymphoma transcriptomic signature: A systems virology approach. Virus research 2 37832654
2025 Transcriptional profiling identification of inflammatory signaling pathways in ulcerative colitis. PloS one 0 40892863
2024 OSBPL2 compound heterozygous variants cause dyschromatosis, ichthyosis, deafness and atopic disease syndrome. Biochimica et biophysica acta. Molecular basis of disease 0 38701954
2024 Cerebellar Molecular Signatures in Non-Human Primates. The Journal of comparative neurology 0 39439015
2023 Extension domain of amyloid processor protein inhibits amyloidogenic cleavage and balances neural activity in a traumatic brain injury mouse model. CNS neuroscience & therapeutics 0 37592823