Affinage

PFDN1

Prefoldin subunit 1 · UniProt O60925

Length
122 aa
Mass
14.2 kDa
Annotated
2026-06-10
33 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PFDN1 is one of six subunits of the heterohexameric prefoldin co-chaperone complex, where the distal tip of the PFDN1-containing tentacle forms binary complexes with nascent actin and tubulin for delivery into the folding pathway, with overlapping subunit-tip sets distinguishing actin from alpha- and beta-tubulin binding (PMID:14634002). Consistent with this cytoskeletal role, loss of PFDN1 reduces tubulin levels and microtubule growth and places it genetically upstream of CCT and tubulin folding (PMID:18062952), and Pfdn1-null mice show cytoskeleton-dependent defects including ciliary dyskinesia, neuronal loss, and blocked B and T lymphocyte maturation with impaired antigen-receptor capping (PMID:18566413). Subunit stoichiometry is enforced by the ubiquitin-proteasome system, which degrades unassembled monomers while complex-incorporated subunits are protected, so depletion of one subunit lowers the others (PMID:21478150). The intact complex acts as a clearance factor that suppresses pathological protein aggregation, blocking polyglutamine-expanded huntingtin at the small-oligomer stage (PMID:23720755) and co-localizing with polyubiquitinated aggregates to limit insoluble protein accumulation under proteasome and ER stress (PMID:23946485). Beyond chaperone function, PFDN1 is upregulated during TGF-β1-induced EMT and translocates to the nucleus, where it binds the cyclin A promoter to repress cyclin A and drive EMT and invasion in lung cancer, an effect rescued by cyclin A re-expression (PMID:27694898); at centrosomes its abundance is set by FILIP1L-dependent proteasomal degradation, and excess PFDN1 produces multinucleation and cytokinesis defects (PMID:34417201).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2003 High

    Established the molecular basis of substrate capture by defining PFDN1 as a structural subunit whose tentacle tip mediates direct binding of actin and tubulin within the assembled prefoldin complex.

    Evidence In vitro reconstitution of recombinant subunits with engineered truncations and binary complex binding assays

    PMID:14634002

    Open questions at the time
    • Does not establish in vivo handoff kinetics to CCT/TRiC
    • Does not define PFDN1's contribution to native complex assembly in cells
  2. 2003 High

    Placed PFDN1 functionally upstream of tubulin folding in vivo, showing its loss limits tubulin biogenesis and microtubule-dependent cellular processes.

    Evidence C. elegans pfd-1 null and RNAi with microtubule dynamics measurement and genetic epistasis to CCT and tubulin

    PMID:18062952

    Open questions at the time
    • Does not resolve whether actin folding contributes to the migration phenotype
    • Worm phenotypes not directly mapped to mammalian tissues
  3. 2008 High

    Demonstrated the organismal consequences of PFDN1 loss, linking its cytoskeletal chaperone role to ciliary, neuronal, and lymphocyte-development phenotypes.

    Evidence Pfdn1 knockout mouse with flow-cytometric developmental staging and antigen-receptor capping assay

    PMID:18566413

    Open questions at the time
    • Does not separate cell-autonomous from systemic effects
    • Molecular link between tubulin/actin folding and capping not directly shown
  4. 2011 Medium

    Explained how prefoldin stoichiometry is maintained, showing unassembled subunits are degraded by the UPS while complex incorporation confers protection.

    Evidence Reciprocal siRNA knockdown, MG132 treatment, and co-IP across subunit combinations

    PMID:21478150

    Open questions at the time
    • E3 ligase mediating monomer turnover not identified
    • Single lab; degradation signal on PFDN1 not mapped
  5. 2014 Medium

    Extended prefoldin function beyond folding to active suppression of disease-associated aggregation, capturing huntingtin at the small-oligomer stage and limiting alpha-synuclein and ubiquitinated-protein accumulation.

    Evidence Single-molecule fluorescence in vitro, co-localization, and subunit knockdown with viability readouts

    PMID:23720755 PMID:23946485 PMID:24511594

    Open questions at the time
    • PFDN1-specific contribution inferred from disruption of other subunits
    • Mechanism of oligomer recognition not defined
  6. 2016 High

    Revealed a non-canonical nuclear function in which PFDN1 acts as a direct transcriptional repressor of cyclin A to drive TGF-β1-induced EMT and invasion.

    Evidence ChIP at the cyclin A promoter, reciprocal gain/loss-of-function, cyclin A rescue, and xenograft

    PMID:27694898

    Open questions at the time
    • How nuclear translocation is triggered is unknown
    • Whether PFDN1 acts alone or within a transcriptional complex at the promoter is unresolved
  7. 2021 High

    Identified FILIP1L as a centrosomal partner controlling PFDN1 localization and proteasomal turnover, linking PFDN1 dosage to faithful cytokinesis.

    Evidence Reciprocal Co-IP, centrosomal co-localization, time-lapse imaging, and FILIP1L knockout mouse/xenograft

    PMID:34417201 PMID:36860703

    Open questions at the time
    • The E3 ligase acting on centrosomal PFDN1 is not identified
    • Mechanistic link from excess PFDN1 to Wnt/β-catenin activation is inferred from FILIP1L loss
  8. 2025 Medium

    Reinforced PFDN1 as a pro-tumorigenic factor in breast cancer, with silencing causing G2/M arrest, apoptosis, and downregulation of angiogenesis/EMT/hypoxia programs.

    Evidence siRNA knockdown with cell-cycle/apoptosis flow cytometry, migration/colony assays, and a 84-gene qRT-PCR array

    PMID:40063241

    Open questions at the time
    • No rescue or direct target validation beyond expression changes
    • Whether effects are chaperone- or transcription-dependent not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PFDN1 partitions between its cytoplasmic chaperone, centrosomal, and nuclear transcriptional roles, and what signals govern these switches, remains unresolved.
  • No structural or regulatory model for PFDN1 nuclear import
  • The trigger redistributing PFDN1 among compartments is undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0044183 protein folding chaperone 2 GO:0003677 DNA binding 1 GO:0008092 cytoskeletal protein binding 1 GO:0140110 transcription regulator activity 1
Localization
GO:0005829 cytosol 2 GO:0005634 nucleus 1 GO:0005815 microtubule organizing center 1
Pathway
R-HSA-392499 Metabolism of proteins 3 R-HSA-1640170 Cell Cycle 2 R-HSA-74160 Gene expression (Transcription) 1
Complex memberships
prefoldin complex

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 PFDN1 (PFD1) is one of six subunits that can spontaneously assemble into a functional heterohexameric prefoldin complex in vitro. The distal tip of the PFD1-containing tentacle is required to form binary complexes with target proteins (actin and tubulins). Different but overlapping sets of subunit tips mediate binding to actin versus alpha- and beta-tubulin. In vitro reconstitution of recombinant prefoldin subunits, engineered truncation variants, binary complex formation assays with actin and tubulin substrates The Journal of biological chemistry High 14634002
2007 In C. elegans, prefoldin subunit 1 (pfd-1) is required for efficient tubulin biogenesis. Loss of pfd-1 reduces alpha-tubulin levels and microtubule growth rate, causing embryonic cell division defects and gonadogenesis/distal tip cell migration defects. RNAi of prefoldin, CCT, or tubulin phenocopies the pfd-1 cell migration defect, placing PFDN1 upstream of tubulin folding in the prefoldin–CCT pathway. RNAi knockdown, pfd-1 null mutant analysis, immunofluorescence, microtubule dynamics measurement, genetic epistasis (phenocopy experiments) Developmental biology High 18062952
2008 Pfdn1-null mice display defects in cytoskeletal function manifesting as ciliary dyskinesia, neuronal loss, and impaired B and T lymphocyte development. B cell maturation is blocked at the pre-pro-B to pre-B transition and T cell maturation at the DN to DP transition. Mature lymphocytes show impaired antigen receptor capping, a cytoskeleton-dependent process, upon BCR cross-linking. Pfdn1 knockout mouse model, flow cytometry, B/T cell developmental staging, antigen receptor capping assay Journal of immunology High 18566413
2011 Prefoldin subunits are protected from ubiquitin-proteasome system (UPS)-mediated degradation by incorporation into the hexameric complex. Knockdown of one subunit decreases protein levels of other subunits. Overexpressed (monomeric) PFD subunits are degraded by the UPS, while endogenous subunits incorporated into the complex are not. There are specific pairwise stabilization relationships among subunits. siRNA knockdown of individual subunits, proteasome inhibitor (MG132) treatment, co-transfection and co-immunoprecipitation, Western blotting The Journal of biological chemistry Medium 21478150
2013 The prefoldin complex (requiring PFD1 as a component) suppresses polyglutamine-expanded Huntingtin (HTT) aggregation at the small oligomer (dimer-to-tetramer) stage in vitro, as demonstrated by single-molecule observation. Knockdown of PFD2 and PFD5 (which disrupts the complex including PFD1) increases soluble HTT oligomer size and induces cell death in HTT-expressing cells. Fluorescence correlation spectroscopy, single-molecule fluorescence observation in vitro, siRNA knockdown of PFD subunits, cell viability assay The Journal of biological chemistry Medium 23720755
2013 Prefoldin (including PFD1 as a constituent subunit) co-localizes with polyubiquitinated proteins in cytoplasmic dots. Knockdown of prefoldin increases SDS-insoluble ubiquitinated protein levels and reduces cell viability under proteasome inhibition (lactacystin) or ER stress (thapsigargin), while overexpression has the opposite effect, establishing prefoldin as a clearance factor preventing pathological protein aggregation. Anti-prefoldin monoclonal antibody, immunofluorescence co-localization, siRNA knockdown, proteasome inhibitor and ER stress treatment, cell viability assay, SDS-PAGE/Western blotting for insoluble ubiquitinated proteins The Journal of biological chemistry Medium 23946485
2014 The prefoldin complex (with PFD1 as a subunit) co-localizes with aggregated alpha-synuclein in lysosomes. Knockdown of PFD2 and PFD5 (disrupting the prefoldin complex) increases alpha-synuclein aggregate accumulation and cell death, demonstrating that intact prefoldin (requiring all subunits including PFD1) protects against alpha-synuclein aggregation-induced toxicity. Fluorescence microscopy, co-localization, siRNA knockdown of prefoldin subunits, cell viability assay in Neuro-2a cells Brain research Low 24511594
2015 PFDN1 subcellular distribution is altered during rabies virus (RABV) infection: PFDN1 is recruited to Negri-Body-Like (NBL) structures in the cytoplasm and co-localizes with the RABV nucleoprotein (N protein). Co-transfection of both N and P genes of RABV is required to reproduce this redistribution; transfection of N or P gene alone does not recapitulate the full redistribution. Confocal microscopy, co-localization analysis in RABV-infected and plasmid-transfected N2a cells Jundishapur journal of microbiology Low 26421138
2016 PFDN1 is upregulated during TGF-β1-induced EMT and translocates to the nucleus in lung cancer cells. Nuclear PFDN1 directly binds to the cyclin A promoter at the transcriptional start site to suppress cyclin A expression. PFDN1 overexpression induces EMT and invasion; cyclin A overexpression rescues these effects, establishing a TGF-β1/PFDN1/cyclin A axis in EMT. Overexpression and knockdown (siRNA), Western blotting, invasion assay, chromatin immunoprecipitation (ChIP) for PFDN1 at cyclin A promoter, rescue experiment with cyclin A overexpression, xenograft tumor model Oncogene High 27694898
2001 PFDN1 was identified as a potential binding partner of the glioma-amplified nuclear protein GAS41 by yeast two-hybrid screening. Yeast two-hybrid screening Oncogene Low 11521196
2021 PFDN1 is a novel binding partner of FILIP1L at centrosomes throughout mitosis. FILIP1L is required for proper centrosomal localization of PFDN1 and regulates proteasome-dependent degradation of PFDN1. Increased PFDN1 caused by FILIP1L loss drives multinucleation and cytokinesis defects in vitro and in vivo. Co-immunoprecipitation, confocal microscopy (centrosome co-localization), time-lapse imaging, 3D cultures, FILIP1L knockout mouse model, xenograft Cancer research High 34417201
2022 In lung adenocarcinoma, loss of FILIP1L leads to increased PFDN1 (its binding partner), which is associated with increased mucin secretion, proliferation, inflammation, and fibrosis, and upregulated Wnt/β-catenin signaling. Lung-specific FILIP1L knockout mice, syngeneic allograft tumors, RNA-sequencing, xenograft Cancer research communications Medium 36860703
2025 PFDN1 silencing in triple-negative breast cancer (MDA-MB-231) cells causes G2/M cell cycle arrest, increased early apoptosis, impaired migration (wound healing), and reduced colony formation. Transcriptome profiling revealed downregulation of angiogenesis (KDR, TEK), EMT (FOXC2, SNAI1), and hypoxia (CA9, EPO) genes, and upregulation of proapoptotic FASLG. siRNA knockdown, flow cytometry (cell cycle and apoptosis), wound healing assay, colony formation assay, SEM, qRT-PCR array (84-gene cancer panel) Naunyn-Schmiedeberg's archives of pharmacology Medium 40063241

Source papers

Stage 0 corpus · 33 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. The Plant journal : for cell and molecular biology 241 21395886
2017 Transethnic genome-wide scan identifies novel Alzheimer's disease loci. Alzheimer's & dementia : the journal of the Alzheimer's Association 162 28183528
1985 The plant ferredoxin precursor: nucleotide sequence of a full length cDNA clone. Nucleic acids research 89 2987875
2007 Efficient chaperone-mediated tubulin biogenesis is essential for cell division and cell migration in C. elegans. Developmental biology 59 18062952
1999 Complementary DNA cloning and characterization of ferredoxin localized in bundle-sheath cells of maize leaves. Plant physiology 58 9952443
2003 Selective contribution of eukaryotic prefoldin subunits to actin and tubulin binding. The Journal of biological chemistry 56 14634002
2016 Prefoldin 1 promotes EMT and lung cancer progression by suppressing cyclin A expression. Oncogene 51 27694898
2013 Prefoldin protects neuronal cells from polyglutamine toxicity by preventing aggregation formation. The Journal of biological chemistry 48 23720755
2011 The genetic interaction network of CCW12, a Saccharomyces cerevisiae gene required for cell wall integrity during budding and formation of mating projections. BMC genomics 36 21320323
2013 Prefoldin plays a role as a clearance factor in preventing proteasome inhibitor-induced protein aggregation. The Journal of biological chemistry 32 23946485
2008 Subunit 1 of the prefoldin chaperone complex is required for lymphocyte development and function. Journal of immunology (Baltimore, Md. : 1950) 31 18566413
2001 Expression, cellular distribution and protein binding of the glioma amplified sequence (GAS41), a highly conserved putative transcription factor. Oncogene 27 11521196
2014 Prefoldin prevents aggregation of α-synuclein. Brain research 25 24511594
2011 Prefoldin subunits are protected from ubiquitin-proteasome system-mediated degradation by forming complex with other constituent subunits. The Journal of biological chemistry 22 21478150
2020 Functional Passenger-Strand miRNAs in Exosomes Derived from Human Colon Cancer Cells and Their Heterogeneous Paracrine Effects. International journal of biological sciences 21 32140072
2021 A genetic approach reveals different modes of action of prefoldins. Plant physiology 16 34618031
2018 Do volatile compounds produced by Fusarium oxysporum and Verticillium dahliae affect stress tolerance in plants? Mycology 15 30181923
2019 Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus. Plant biotechnology journal 14 31498543
2023 Shared genetics and causal relationships between migraine and thyroid function traits. Cephalalgia : an international journal of headache 13 36739509
2021 FILIP1L Loss Is a Driver of Aggressive Mucinous Colorectal Adenocarcinoma and Mediates Cytokinesis Defects through PFDN1. Cancer research 12 34417201
2022 Smoking-associated Downregulation of FILIP1L Enhances Lung Adenocarcinoma Progression Through Mucin Production, Inflammation, and Fibrosis. Cancer research communications 11 36860703
2020 The Role of Prefoldin and Its Subunits in Tumors and Their Application Prospects in Nanomedicine. Cancer management and research 11 33061580
2020 Overexpression of Canonical Prefoldin Associates with the Risk of Mortality and Metastasis in Non-Small Cell Lung Cancer. Cancers 9 32344577
2023 CDK5R1, GSE1, HSPG2 and WDFY3 as indirect epigenetic-sensitive genes in atrial fibrillation. European journal of clinical investigation 7 37991085
2015 Analysis of Subcellular Prefoldin 1 Redistribution During Rabies Virus Infection. Jundishapur journal of microbiology 7 26421138
2022 Prefoldin and prefoldin-like complex subunits as predictive biomarkers for hepatocellular carcinoma immunotherapy. Pathology, research and practice 6 35217267
2021 Coordinated Regulation of Protoperithecium Development by MAP Kinases MAK-1 and MAK-2 in Neurospora crassa. Frontiers in microbiology 6 34899653
2025 PFDN1 silencing disrupts critical cancer pathways in triple-negative breast cancer: investigating migration, cell cycle, and apoptosis as a new target therapy. Naunyn-Schmiedeberg's archives of pharmacology 5 40063241
2025 The cytonuclear interactions during grapevine domestication. Journal of integrative plant biology 4 40728102
2024 Consistent genes associated with structural changes in clinical Alzheimer's disease spectrum. Frontiers in neuroscience 3 39554844
2025 Characterization of Proteome Features in Patients With Aortic Stenosis Using Data-Independent Acquisition-Based Proteomic Analysis. Korean circulation journal 1 41044724
2024 Prefoldins are novel regulators of the unfolded protein response in artemisinin resistant Plasmodium falciparum malaria. The Journal of biological chemistry 1 38925325
2026 Transcriptional profiling of circulating extracellular vesicles from prebiopsy prostate cancer patients. Molecular oncology 0 41885368

Missed literature

Know a paper Affinage missed for PFDN1? Flag it for the maintainers and the community.

No submissions yet.