Affinage

PEX10

Peroxisome biogenesis factor 10 · UniProt O60683

Length
326 aa
Mass
37.1 kDa
Annotated
2026-06-10
19 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PEX10 is an integral peroxisomal membrane protein required for peroxisomal matrix-protein import, defined by two transmembrane segments and a cytosol-facing C3HC4 zinc-finger RING motif whose integrity is essential for function (PMID:9700193, PMID:9683594). It operates downstream of PEX5 receptor docking: loss of PEX10 does not prevent PEX5 association with peroxisomes, and PEX10 instead physically interacts with PEX12 through PEX12's zinc-RING domain, with PEX10 overexpression suppressing a PEX12 missense allele—establishing PEX10 and PEX12 as functionally coupled RING partners (PMID:10562279). The RING domain is the critical catalytic element: zinc-coordination mutants impair function, and abolishing Zn2+ binding in the plant ortholog produces deformed peroxisomes, defective peroxisome–chloroplast contact, and failed photorespiration, linking the RING to ubiquitination of PEX5 (PMID:10862081, PMID:20679226). In prostate cancer cells PEX10 is transcriptionally induced through an androgen-receptor/FOXA1 enhancer and lowers intracellular ROS, so that AR blockade by enzalutamide suppresses PEX10 and sensitizes cells to ROS-activating agents (PMID:39097593). Beyond these findings, the detailed enzymatic mechanism of PEX10-mediated ubiquitin transfer in mammalian cells has not been directly characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 1998 High

    Established that PEX10 is a peroxisomal membrane protein whose RING domain is required to support matrix-protein import, defining it as a biogenesis factor rather than an imported matrix protein.

    Evidence Epitope-tagged topology mapping, subcellular fractionation, and functional complementation of PBD group B/CG7 fibroblasts with wild-type and RING-deleted cDNAs

    PMID:9683594 PMID:9700193

    Open questions at the time
    • Molecular activity of the RING domain not yet defined
    • Direct binding partners at the membrane not identified
  2. 1999 High

    Placed PEX10 in a defined import step by showing it acts downstream of PEX5 docking and physically partners with PEX12, answering where in the import cascade PEX10 functions.

    Evidence Two-hybrid, blot overlay, co-immunoprecipitation, in vivo genetic suppression of a PEX12 mutation, and PEX5 peroxisome-association assay

    PMID:10562279

    Open questions at the time
    • Biochemical consequence of the PEX10–PEX12 interaction not resolved
    • Whether the pair acts catalytically not addressed here
  3. 2000 Medium

    Refined which residues of the RING domain carry function by showing graded activity loss across missense versus null alleles, connecting genotype to residual biological activity.

    Evidence Site-directed mutagenesis and functional complementation in PEX10-deficient patient fibroblasts

    PMID:10862081

    Open questions at the time
    • Complementation results confounded by read-through/alternative-translation artifacts noted by authors
    • Single-lab assay without orthogonal biochemical confirmation
  4. 2010 Medium

    Linked the RING domain to PEX5 ubiquitination and revealed the N-terminal cytosolic domain controls peroxisome shape and inter-organelle contact, broadening PEX10's role beyond import to organelle morphology and metabolism.

    Evidence Dominant-negative zinc-binding mutants in Arabidopsis with confocal morphology, metabolite analysis, and photorespiration gas-exchange assays

    PMID:20679226

    Open questions at the time
    • Plant ortholog context limits direct extrapolation to mammalian PEX10
    • Direct demonstration of PEX10-catalyzed PEX5 ubiquitination not shown
  5. 2024 Medium

    Identified a transcriptional input and a physiological output for PEX10, showing AR/FOXA1 drives its expression and PEX10 buffers intracellular ROS, connecting peroxisomal function to redox control in cancer cells.

    Evidence ChIP/enhancer analysis of AR-FOXA1 at the PEX10 locus, ROS assays, enzalutamide treatment, and PEX10 knockdown/overexpression with viability readouts

    PMID:39097593

    Open questions at the time
    • Mechanism linking PEX10 to ROS reduction not defined
    • Single cancer-cell context
  6. 2025 Medium

    Provided structural framing for the Pex2/Pex10/Pex12 RING complex acting as an E3 ligase that assembles with Pex5/Pex8 to initiate PTS1-receptor recycling after cargo translocation.

    Evidence Cryo-EM of Pex8–Pex5 complex with yeast complementation and interface mutagenesis (preprint)

    Open questions at the time
    • PEX10's specific role inferred from complex membership rather than directly interrogated
    • Preprint, not peer-reviewed
    • Mammalian relevance not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct enzymatic activity of mammalian PEX10 as a ubiquitin ligase—its E2 partner, substrate-engagement mechanism, and the structure of the assembled Pex2/Pex10/Pex12 complex—remains uncharacterized in the available corpus.
  • No reconstituted ubiquitination assay with mammalian PEX10
  • Cognate E2 enzyme not identified
  • No mammalian structure of the assembled RING complex

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016874 ligase activity 3 GO:0140096 catalytic activity, acting on a protein 1
Pathway
R-HSA-9609507 Protein localization 2 R-HSA-1852241 Organelle biogenesis and maintenance 1
Partners
Complex memberships
Pex2/Pex10/Pex12 E3-ubiquitin ligase complex

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 PEX10 encodes an integral peroxisomal membrane protein with two transmembrane segments and a C3HC4 zinc-finger RING motif; both N- and C-terminal regions are exposed to the cytosol. Its expression rescues peroxisomal matrix-protein import in PBD complementation group B/CG7 fibroblasts, and the C-terminal RING finger domain is required for biological function (frameshift removing RING motif abolished rescue activity). Epitope-tagged expression constructs, immunofluorescence, subcellular fractionation, functional complementation assay in patient fibroblasts, mutant cDNA rescue experiments Human molecular genetics High 9683594 9700193
1999 PEX10 physically interacts with PEX12 (via PEX12's zinc-RING domain) and this interaction is biologically relevant: overexpression of PEX10 suppresses a PEX12 missense mutation (S320F). Loss of PEX10 does not prevent PEX5 docking to peroxisomes, placing PEX10 downstream of receptor docking in peroxisomal matrix-protein import. Two-hybrid assay, blot overlay assay, co-immunoprecipitation, genetic suppressor overexpression, PEX5 peroxisome-association assay The Journal of cell biology High 10562279
2000 The C-terminal zinc-binding (RING) domain of PEX10 is critical for PEX10 function; missense mutation H290Q in this domain results in a milder (residual) PEX10 activity compared with null alleles. Nonsense/frameshift mutations deleting the C-terminal two-thirds still yielded unexpectedly high activity in complementation assays, attributed to read-through or alternative translation, but deliberate deletion or mutation of downstream sequence abolished this activity. Functional complementation assay in PEX10-deficient patient fibroblasts, site-directed mutagenesis of PEX10 cDNA constructs Human mutation Medium 10862081
2010 In Arabidopsis (plant ortholog study), abolishing Zn2+ coordination in PEX10's RING finger (ΔZn mutation) causes deformed peroxisomal shapes, impaired peroxisome-chloroplast contact, and defective photorespiration, revealing that the N-terminal cytosolic domain of PEX10 is critical for peroxisome biogenesis and shape, while the RING finger domain is implicated in ubiquitination of PEX5. Dominant-negative overexpression of zinc-binding mutants in Arabidopsis, confocal microscopy of peroxisome morphology, metabolite analysis, photorespiration assay under varying CO2 Proceedings of the National Academy of Sciences of the United States of America Medium 20679226
2024 In prostate cancer cells, PEX10 expression is induced by ROS activators and reduces intracellular ROS levels. The androgen receptor (AR), in cooperation with FOXA1, acts as a transcriptional enhancer to promote PEX10 expression. Enzalutamide inhibits AR function and thereby suppresses PEX10, sensitizing cells to ROS-activating agents (ML210, RSL3). ROS measurement assays, ChIP/enhancer analysis for AR-FOXA1 at PEX10 locus, enzalutamide treatment, knockdown/overexpression of PEX10, cell viability assays with ROS activators Cell death & disease Medium 39097593
2025 Structural and functional evidence (preprint) indicates that the Pex2/Pex10/Pex12 complex functions as an E3-ubiquitin ligase complex at the peroxisomal membrane that assembles with Pex5/Pex8 to initiate recycling of the PTS1 receptor Pex5 following cargo translocation. Cryo-EM structure of Pex8-Pex5 complex, functional complementation assays in yeast, mutagenesis of interaction interfaces bioRxivpreprint Medium

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 PEX12 interacts with PEX5 and PEX10 and acts downstream of receptor docking in peroxisomal matrix protein import. The Journal of cell biology 117 10562279
1998 Identification of PEX10, the gene defective in complementation group 7 of the peroxisome-biogenesis disorders. American journal of human genetics 103 9683594
1998 Mutations in PEX10 is the cause of Zellweger peroxisome deficiency syndrome of complementation group B. Human molecular genetics 89 9700193
2010 Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import. Proceedings of the National Academy of Sciences of the United States of America 48 20679226
2006 Identification of novel mutations in PEX2, PEX6, PEX10, PEX12, and PEX13 in Zellweger spectrum patients. Human mutation 39 17041890
2005 Identification and characterization of three peroxins--PEX6, PEX10 and PEX12--involved in glycosome biogenesis in Trypanosoma brucei. Biochimica et biophysica acta 37 16388862
2021 Increased Accumulation of Squalene in Engineered Yarrowia lipolytica through Deletion of PEX10 and URE2. Applied and environmental microbiology 32 34132586
2008 A PEX10 defect in a patient with no detectable defect in peroxisome assembly or metabolism in cultured fibroblasts. Journal of inherited metabolic disease 31 19127411
2003 Genetic heterogeneity of peroxisome biogenesis disorders among Japanese patients: evidence for a founder haplotype for the most common PEX10 gene mutation. American journal of medical genetics. Part A 25 12794690
2000 Phenotype-genotype relationships in PEX10-deficient peroxisome biogenesis disorder patients. Human mutation 22 10862081
2014 Association study between polymorphisms of PRMT6, PEX10, SOX5, and nonobstructive azoospermia in the Han Chinese population. Biology of reproduction 19 24648396
2019 PEX10, SIRPA-SIRPG, and SOX5 gene polymorphisms are strongly associated with nonobstructive azoospermia susceptibility. Journal of assisted reproduction and genetics 17 30863997
2017 Ataxic form of autosomal recessive PEX10-related peroxisome biogenesis disorders with a novel compound heterozygous gene mutation and characteristic clinical phenotype. Journal of the neurological sciences 9 28320181
2017 Identification of a novel mutation in PEX10 in a patient with attenuated Zellweger spectrum disorder: a case report. Journal of medical case reports 8 28784167
2024 Enzalutamide inhibits PEX10 function and sensitizes prostate cancer cells to ROS activators. Cell death & disease 6 39097593
2019 Ataxia with novel compound heterozygous PEX10 mutations and a literature review of PEX10-related peroxisome biogenesis disorders. Clinical neurology and neurosurgery 6 30640048
2025 Identification of novel compound heterozygous variants in the PEX10 gene in a Han-Chinese family with PEX10-related peroxisome biogenesis disorders. PloS one 3 40267090
2022 How to Detect Isolated PEX10-Related Cerebellar Ataxia? Neuropediatrics 3 35038753
2015 [Abnormal expression of PEX10 gene may be related to epilepsy associated with 1p36 copy number variations]. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 0 25636090

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