Affinage

P4HA1

Prolyl 4-hydroxylase subunit alpha-1 · UniProt P13674

Length
534 aa
Mass
61.0 kDa
Annotated
2026-06-10
17 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 5/6 claims corpus-supported (83%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

P4HA1 is the catalytic subunit of collagen prolyl-4-hydroxylase that converts proline to 4-hydroxyproline in procollagen chains, an α-ketoglutarate-dependent reaction essential for triple-helical collagen folding and extracellular matrix integrity (PMID:25115393, PMID:42165645). Loss of scleral P4HA1 reduces hydroxyproline content and collagen organization, while AAV8-mediated restoration rescues hydroxyproline levels, increases COL1A1, normalizes MMP2/TIMP2 balance, and restores collagen density, demonstrating a direct causal role in collagen maturation (PMID:42165645). Through its consumption of α-ketoglutarate and accumulation of succinate, P4HA1 reduces prolyl hydroxylation of HIF-1α and stabilizes it, linking the enzyme to a metabolic program that promotes cancer cell stemness, suppresses oxidative phosphorylation and ROS, and drives chemoresistance (PMID:30367042). Tumor cell nutrient uptake feeds this axis: pyruvate-derived α-ketoglutarate activates P4HA-mediated collagen hydroxylation in the lung metastatic niche to support metastatic outgrowth (PMID:30814728). In prostate cancer, P4HA1 overexpression drives invasion through MMP1 upregulation and is controlled by a miR-124/EZH2/CtBP1 regulatory axis (PMID:25115393). Beyond (PMID:30367042), (PMID:30814728), (PMID:25115393) and (PMID:42165645), isoform-specific mechanisms in pVHL-independent HIF control and mammary stemness remain incompletely characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 1997 Medium

    Establishing the genomic position of the human P4HA gene anchored it physically in the genome and to a neighboring collagen gene, providing a foundation for its locus-level study.

    Evidence high-resolution FISH on stretched chromosomes, interphase nuclei, and fiber FISH

    PMID:9417920

    Open questions at the time
    • Does not address enzymatic function or regulation
    • No link to disease or expression control
  2. 2014 Medium

    Confirming P4HA1's hydroxylation of procollagen proline and linking its overexpression to MMP1-driven invasion connected the enzyme's biochemical role to a tumor-progression phenotype and an upstream miRNA regulatory circuit.

    Evidence shRNA/overexpression in prostate cancer cells with MMP1 rescue, miR-124/EZH2/CtBP1 manipulation, chick CAM and mouse xenograft

    PMID:25115393

    Open questions at the time
    • Single lab
    • MMP1 mechanism downstream of P4HA1 not fully dissected
    • Restricted to prostate cancer context
  3. 2017 Medium

    Testing whether elevated P4HA1 governs procollagen secretion clarified that, while required for triple-helical formation, P4HA1 levels do not drive early secretion kinetics after ascorbate restoration.

    Evidence cardiac fibroblast culture ± ascorbate with Western blotting, P4HA2 overexpression, and pulse-chase secretion assays

    PMID:28923350

    Open questions at the time
    • Negative finding limited to early secretion window
    • Does not resolve what does control the secretion rate
  4. 2018 High

    Demonstrating that P4HA1 shifts α-KG/succinate balance to stabilize HIF-1α reframed the enzyme as a metabolic regulator of cancer stemness and chemoresistance beyond collagen synthesis.

    Evidence shRNA knockdown in TNBC cells with metabolite profiling, HIF-1α stability assays, and xenograft/PDX chemotherapy models

    PMID:30367042

    Open questions at the time
    • Direct measurement of HIF prolyl hydroxylase inhibition by succinate not isolated
    • Generalizability beyond TNBC unestablished
  5. 2019 High

    Tracing nutrient flux to enzyme activity showed pyruvate-derived α-KG fuels P4HA-mediated collagen hydroxylation in the metastatic niche, establishing a nutrient-to-ECM remodeling axis.

    Evidence metabolic tracing of pyruvate to α-KG, P4HA activity assays, pyruvate metabolism inhibition in mouse metastasis models

    PMID:30814728

    Open questions at the time
    • P4HA1-specific versus P4HA2 contribution not separated
    • Mechanism of niche collagen remodeling on metastatic cells incompletely defined
  6. 2026 Medium

    Gain-of-function rescue in a myopia model causally tied P4HA1-dependent proline hydroxylation to scleral collagen organization and ocular axial length.

    Evidence AAV8-P4HA1 overexpression in guinea pig form-deprivation myopia model, metabolomics, gene expression, and collagen ultrastructure, plus 1,4-DPCA inhibition in fibroblasts

    PMID:42165645

    Open questions at the time
    • Single lab
    • Mechanism linking P4HA1 to MMP2/TIMP2 regulation not resolved
    • Pharmacological inhibitor not P4HA1-selective
  7. 2025 Medium

    Probing pVHL-deficient ccRCC indicated P4HA1/2 control HIF-1α/2α at translation and transcription independently of pVHL, extending its HIF regulation to a degradation-independent layer.

    Evidence P4HA1/2 knockdown in pVHL-deficient ccRCC cells with HIF-1α/2α protein and mRNA measurement (preprint)

    PMID:bio_10.1101_2025.09.14.676157

    Open questions at the time
    • Preprint, not peer-reviewed
    • P4HA1 versus P4HA2 contributions not separated
    • Mechanism connecting collagen production to HIF translation/transcription undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How P4HA1-specific (versus P4HA2/3) catalytic activity is mechanistically coupled to transcriptional/translational HIF control and to tissue stemness programs remains unresolved.
  • No isoform-specific rescue separating P4HA1 from family members
  • No structural model of the catalytic mechanism in the corpus
  • Causal link between collagen output and HIF regulation undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016491 oxidoreductase activity 2 GO:0016787 hydrolase activity 2
Pathway
R-HSA-1474244 Extracellular matrix organization 3 R-HSA-1430728 Metabolism 2 R-HSA-1643685 Disease 2
Partners
Complex memberships
collagen prolyl-4-hydroxylase

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2018 P4HA1 modulates alpha-ketoglutarate (α-KG) and succinate levels, thereby reducing proline hydroxylation on HIF-1α and enhancing its stability in cancer cells. This P4HA1/HIF-1 axis promotes cancer cell stemness, decreases oxidative phosphorylation and reactive oxygen species (ROS) levels, and drives chemoresistance in triple-negative breast cancer. shRNA knockdown of P4HA1 in TNBC cells; metabolic profiling of α-KG and succinate; HIF-1α stability assays; xenograft and patient-derived models with docetaxel/doxorubicin treatment Nature communications High 30367042
2019 Pyruvate uptake by breast cancer cells induces production of α-ketoglutarate, which activates P4HA-mediated collagen hydroxylation in the lung metastatic niche, promoting metastatic growth. Inhibition of pyruvate metabolism impairs collagen hydroxylation and lung metastasis. Metabolic tracing of pyruvate to α-KG; P4HA activity assays; inhibition of pyruvate metabolism in mouse metastasis models; functional ECM remodeling assays Nature High 30814728
2014 P4HA1 catalyzes the formation of 4-hydroxyproline in procollagen chains essential for their three-dimensional folding. In prostate cancer, P4HA1 overexpression drives tumor progression and invasion via upregulation of MMP1; invasive properties of P4HA1-overexpressing cells are reversed by MMP1 blockade. P4HA1 expression is regulated by miR-124, which is in turn repressed by EZH2 and CtBP1. shRNA/overexpression of P4HA1 in prostate cancer cells; MMP1 rescue experiment; miR-124 overexpression; EZH2/CtBP1 manipulation; chick CAM assay and mouse xenograft Oncotarget Medium 25115393
2025 In clear cell renal cell carcinoma (ccRCC) with pVHL deficiency, P4HA1 (and P4HA2) are required for HIF-1α translation and HIF-2α transcription and translation through a pVHL-independent mechanism that is regulated in part by P4HA1/2-driven collagen production. P4HA1/2 knockdown in pVHL-deficient ccRCC cells; measurement of HIF-1α/HIF-2α protein and mRNA levels; mechanistic dissection separating pVHL-dependent and -independent pathways bioRxivpreprint Medium bio_10.1101_2025.09.14.676157
2026 In form-deprivation myopia, decreased scleral P4HA1 expression reduces proline hydroxylation and hydroxyproline content, leading to collagen disorganization and axial elongation. AAV8-mediated restoration of P4HA1 expression rescued hydroxyproline levels, increased COL1A1, reduced MMP2, reinstated TIMP2, and improved collagen density and alignment, thereby mitigating axial elongation. Pharmacological inhibition of P4HA (1,4-DPCA) in fibroblasts reduced hydroxyproline and collagen production. AAV8-P4HA1 overexpression in guinea pig FDM model; metabolomics (targeted/untargeted); pharmacological P4HA inhibition (1,4-DPCA) in primary fibroblasts; collagen ultrastructure assessment Investigative ophthalmology & visual science Medium 42165645
2017 In cardiac fibroblasts deprived of ascorbate, P4HA1 protein levels rise along with intracellular procollagen accumulation. Despite being necessary for triple-helical procollagen formation, elevated P4HA1 (and P4HA2) levels were NOT responsible for the early increased procollagen secretion upon ascorbate re-addition. Cardiac fibroblast culture ± ascorbate; Western blotting for P4HA1, P4HA2, procollagen; P4HA2 overexpression; pulse-chase secretion assays Journal of molecular and cellular cardiology Medium 28923350
1997 The human P4HA gene was mapped to chromosome 10q by FISH, determined to be telomeric to COL13A1 with a tail-to-tail transcriptional orientation and ~550 kb separating the two genes. High-resolution fluorescence in situ hybridization (FISH) on mechanically stretched chromosomes, interphase nuclei, and fiber FISH Genomics Medium 9417920
2025 CHDH-mediated changes in histone H3 trimethylation upregulate P4HA1 (along with P4HA2/3) expression, which stabilizes collagen I and increases IL17RB expression, promoting downstream c-Jun activation and colorectal cancer metastasis. P4HA inhibitors abolished CHDH-mediated CRC cell metastasis in vitro and in vivo. CHDH knockdown/overexpression; P4HA inhibitor treatment; xenograft mouse model; histone methylation analysis; collagen I and IL17RB/c-Jun pathway assays MedComm Low 39764560
2024 P4HA1 knockout in mouse mammary glands disrupts a unique subcluster of basal epithelial cells that exhibits concurrent activation of stem cell development and inflammatory response pathways, indicating P4HA1 regulates the interplay between stemness and inflammation in mammary tissue. P4HA1 knockout mice; single-cell RNA sequencing; SCENIC gene regulatory network inference; experimental validation of network predictions bioRxivpreprint Low bio_10.1101_2024.11.05.622022

Source papers

Stage 0 corpus · 17 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Prolyl-4-hydroxylase α subunit 2 promotes breast cancer progression and metastasis by regulating collagen deposition. BMC cancer 370 24383403
2019 Breast cancer cells rely on environmental pyruvate to shape the metastatic niche. Nature 257 30814728
2018 Collagen prolyl 4-hydroxylase 1 is essential for HIF-1α stabilization and TNBC chemoresistance. Nature communications 223 30367042
2014 The miR-124-prolyl hydroxylase P4HA1-MMP1 axis plays a critical role in prostate cancer progression. Oncotarget 82 25115393
2023 P4HA2 induces hepatic ductular reaction and biliary fibrosis in chronic cholestatic liver diseases. Hepatology (Baltimore, Md.) 42 36799463
2014 Transcriptional profiling of rapamycin-treated fibroblasts from hypertrophic and keloid scars. Annals of plastic surgery 40 24835866
2012 Maternal obesity enhances collagen accumulation and cross-linking in skeletal muscle of ovine offspring. PloS one 38 22348119
2023 Increased expression of collagen prolyl hydroxylases in ovarian cancer is associated with cancer growth and metastasis. American journal of cancer research 16 38187063
2021 Profiling extra cellular matrix associated proteome of human fetal nucleus pulposus in search for regenerative targets. Scientific reports 9 34561485
2025 Prolyl 4-hydroxylase α-subunit family regulation of type I collagen deposition and IL17RB/c-Jun activation synergistically mediate choline dehydrogenase promotion of colorectal cancer metastasis. MedComm 5 39764560
2017 Ascorbate starvation alters endoplasmic reticulum-resident enzymes in cardiac fibroblasts, priming them for increased procollagen secretion. Journal of molecular and cellular cardiology 5 28923350
1997 The order and transcriptional orientation of the human COL13A1 and P4HA genes on chromosome 10 long arm determined by high-resolution FISH. Genomics 3 9417920
2025 Decoding xenia effects on 'Jinsha' pomelo: Insights from physiological, transcriptomics and metabolomics analyses. Plant physiology and biochemistry : PPB 1 40022882
2025 Intralipid Infusion to Fetal Sheep (Ovis aries) Promotes Differentiation and Lipid Accumulation of Adipose Tissues. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 1 41160060
2024 Collagen prolyl 4-hydroxylase subunit α member-induced head and neck squamous cell carcinoma aggressiveness is antagonized by LLGL2 via reduced expression of occludin. Acta biochimica et biophysica Sinica 1 39394821
2026 Impaired P4HA1-Driven Hydroxyproline Formation Mediates Scleral Collagen Disruption in Form-Deprivation Myopia. Investigative ophthalmology & visual science 0 42165645
2025 Mechanistic insights into the delayed yellowing of broccoli by the combination of ectoine and lactide peptide. NPJ science of food 0 41203678

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