Affinage

NR2C2AP

Nuclear receptor 2C2-associated protein · UniProt Q86WQ0

Length
139 aa
Mass
15.9 kDa
Annotated
2026-06-10
6 papers in source corpus 2 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

NR2C2AP (TRA16) is a nuclear protein that functions as a selective modulator of testicular orphan nuclear receptor signaling within the NR2C subfamily (PMID:12486131, PMID:23129017). It acts as a co-repressor of TR4 (NR2C2), binding the receptor through both its DNA-binding and ligand-binding domains and suppressing TR4-mediated transactivation by decreasing TR4 occupancy at its response elements (PMID:12486131). This repressor activity is receptor-selective, with only slight effects on androgen, glucocorticoid, and progesterone receptors (PMID:12486131). NR2C2AP also physically engages the related receptor TR2 (NR2C1), where it blocks TR2's inhibitory effect on ERβ-mediated transcription and thereby enhances ERβ transactivation (PMID:23129017). Beyond these nuclear-receptor interactions, no broader pathway placement or structural mechanism has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2002 High

    Establishing how NR2C2AP controls TR4 signaling answered whether a dedicated repressor restrains this orphan nuclear receptor and by what molecular route.

    Evidence Mammalian two-hybrid, reciprocal co-immunoprecipitation, EMSA, and reporter transactivation assays mapping interaction to TR4's DNA-binding and ligand-binding domains

    PMID:12486131

    Open questions at the time
    • No identification of additional co-repressor complex partners recruited by NR2C2AP
    • Direct target genes of TR4 modulated in vivo not defined
    • No structural detail of the TR4-NR2C2AP interface
  2. 2002 Medium

    Comparing multiple nuclear receptors established that NR2C2AP repression is receptor-selective rather than a general transcriptional dampener.

    Evidence Reporter gene transactivation assays comparing TR4 against androgen, glucocorticoid, and progesterone receptors

    PMID:12486131

    Open questions at the time
    • Selectivity tested only against a limited panel of steroid receptors
    • Basis of selectivity at the sequence/domain level not resolved
  3. 2002 Medium

    Localizing NR2C2AP placed it in the nucleus, consistent with a role in transcriptional regulation.

    Evidence Subcellular localization assay reported within the functional characterization study

    PMID:12486131

    Open questions at the time
    • Imaging methodology not detailed
    • Whether localization changes upon receptor binding not addressed
  4. 2012 Medium

    Extending the receptor repertoire showed NR2C2AP also acts on TR2 to indirectly potentiate ERβ activity, broadening its role beyond TR4 repression.

    Evidence Mammalian two-hybrid, co-immunoprecipitation, immunocytofluorescence, and reporter assays in Cos-1 cells

    PMID:23129017

    Open questions at the time
    • Single-lab evidence without reciprocal validation in a second cell system
    • Domain mapping of the TR2 interaction not performed
    • Physiological ERβ targets affected not identified
  5. 2012 Low

    Overexpression linked NR2C2AP to a cellular proliferation phenotype, hinting at a downstream consequence of its receptor modulation.

    Evidence Cell proliferation assay after NR2C2AP introduction into Cos-1 cells

    PMID:23129017

    Open questions at the time
    • Single method, single cell line without loss-of-function confirmation
    • Causal link between proliferation and receptor modulation not established
    • No in vivo or disease-relevant validation

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown whether NR2C2AP nucleates a defined co-repressor complex and what endogenous gene programs it controls through TR4, TR2, and ERβ.
  • No identified co-repressor complex subunits
  • No genome-wide target gene mapping
  • No structural model of receptor binding

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 3 GO:0098772 molecular function regulator activity 2
Localization
GO:0005634 nucleus 3
Pathway
R-HSA-74160 Gene expression (Transcription) 2
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2002 TRA16 (NR2C2AP) was identified as a nuclear co-repressor that interacts with TR4 (NR2C2) via TR4's DNA-binding domain and ligand-binding domain, suppressing TR4-mediated transactivation. The suppression mechanism involves decreased binding between TR4 protein and TR4 response elements on target genes, as shown by EMSA. Mammalian two-hybrid system, co-immunoprecipitation, electrophoretic mobility shift assay (EMSA), reporter gene transactivation assay The Journal of biological chemistry High 12486131
2002 TRA16 (NR2C2AP) selectively suppresses TR4-mediated transactivation but shows only slight influence on androgen receptor, glucocorticoid receptor, and progesterone receptor transactivation, indicating receptor-selective repressor activity. Reporter gene transactivation assay comparing multiple nuclear receptors The Journal of biological chemistry Medium 12486131
2002 TRA16 (NR2C2AP) is predominantly localized in the nucleus of cells. Subcellular localization assay (described in functional characterization context) The Journal of biological chemistry Medium 12486131
2012 TRA16 (NR2C2AP) physically interacts with TR2 (NR2C1) and blocks TR2's inhibitory effect on ERβ-mediated transcription, thereby enhancing ERβ transactivation. Mammalian two-hybrid, reporter gene assay, co-immunoprecipitation, immunocytofluorescence in Cos-1 cells Oncology reports Medium 23129017
2012 TRA16 (NR2C2AP) overexpression in Cos-1 cells enhanced cell proliferation. Cell proliferation assay following TRA16 introduction into Cos-1 cells Oncology reports Low 23129017

Source papers

Stage 0 corpus · 6 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Identification of a novel testicular orphan receptor-4 (TR4)-associated protein as repressor for the selective suppression of TR4-mediated transactivation. The Journal of biological chemistry 20 12486131
2012 Testicular orphan nuclear receptor 4-associated protein 16 promotes non-small cell lung carcinoma by activating estrogen receptor β and blocking testicular orphan nuclear receptor 2. Oncology reports 8 23129017
2017 Effects of Klf4 and c-Myc Knockdown on Pluripotency Maintenance in Porcine Induced Pluripotent Stem Cell. Cell journal 6 29105400
2014 Establishment and identification of induced pluripotent stem cells in liver cancer patients. Asian Pacific journal of tropical medicine 2 24507670
2007 [Expression of TR4-associated protein in non-small cell lung cancer]. Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences 2 17940562
2025 Pan-cancer analysis reveals TRA16 as a master regulator of human carcinogenesis. Frontiers in oncology 0 40432923

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