| 2001 |
NEPH1 knockout mice develop proteinuria and podocyte foot process effacement, establishing that NEPH1 is required for maintaining the structural integrity of the glomerular filtration barrier in podocytes. |
Gene trap knockout mice; electron microscopy; proteinuria assay |
Molecular and cellular biology |
High |
11416156
|
| 2002 |
NEPH1 directly interacts with the C-terminal domain of podocin via a conserved binding motif; mutation of a centrally located tyrosine residue dramatically reduces NEPH1-podocin affinity. NEPH1 also triggers AP-1 activation requiring Tec family kinases. |
Co-immunoprecipitation; mutagenesis; transcriptional reporter assay |
FASEB journal |
High |
12424224
|
| 2003 |
NEPH1 localizes to the glomerular slit diaphragm (confirmed by immunogold EM) and directly interacts with nephrin (via extracellular segments) and ZO-1 (via ZO-1 PDZ domains interacting with the cytoplasmic tail of Neph1). Neph1 forms dimers and multimers. Disrupting the Neph1-nephrin interaction in vivo by injecting subnephritogenic doses of both antibodies causes proteinuria and dramatically reduces ZO-1 protein levels without altering ZO-1 mRNA. |
Immunogold electron microscopy; co-immunoprecipitation; in vivo antibody injection; western blot |
The Journal of clinical investigation |
High |
12865409
|
| 2003 |
Neph1 localizes exclusively to the lateral margins of podocyte foot processes at the slit diaphragm insertion. Neph1 and Nephrin form cis heterodimers via their cytoplasmic domains, and interactions between extracellular domains of Nephrin with itself and with Neph1 were detected. Neph1 does not engage in homophilic interactions. |
Immunogold electron microscopy; co-immunoprecipitation; cell fractionation (detergent-resistant membrane) |
The Journal of biological chemistry |
High |
12646566
|
| 2003 |
The extracellular Ig domains of NEPH1 mediate both homodimerization and heterodimerization with nephrin; as few as two Ig domains are sufficient for binding. These interactions are strictly dependent on post-translational glycosylation (bacterially expressed unglycosylated protein fails to bind). |
Co-immunoprecipitation; Ig-fusion pulldown; truncation analysis; glycosylation-deficient expression |
Journal of the American Society of Nephrology |
High |
12660326
|
| 2006 |
Neph1 is expressed in the developing mammalian brain and localizes to dendritic shafts and synaptic sites. Neph1 interacts with the PDZ domain of the synaptic scaffolding protein CASK via its cytoplasmic tail, suggesting a role in synaptogenesis. |
In situ hybridization; immunohistochemistry; immunogold EM; co-immunoprecipitation |
The Journal of comparative neurology |
Medium |
16874800
|
| 2007 |
Upon engagement, Neph1 is phosphorylated on specific tyrosine residues by the Src family kinase Fyn, which recruits the adaptor Grb2. This Grb2 recruitment is necessary for Neph1-induced actin polymerization at the plasma membrane. Neph1 and Nephrin directly interact and cooperate by juxtaposing Grb2 and Nck1/2 at the membrane to augment actin polymerization efficiency. |
Phosphorylation assay; co-immunoprecipitation; dominant-negative and siRNA knockdown; actin polymerization assay; mutagenesis |
Molecular and cellular biology |
High |
17923684
|
| 2008 |
Fyn phosphorylates the cytoplasmic domain of Neph1 at multiple tyrosines (including Y637 and Y638) both in vitro and in intact cells. Phosphorylated Neph1 specifically binds adaptor protein Grb2 and tyrosine kinase Csk in a phosphorylation-dependent manner (from glomerular lysates). Neph1 attenuates Fyn-elicited ERK activation, requiring intact Grb2-SH2 binding motif. Phosphorylation of Y637 is upregulated in vivo in podocyte injury models. |
In vitro kinase assay; peptide mass fingerprinting; site-directed mutagenesis; GST pulldown from rat glomerular lysates; co-immunoprecipitation |
The Journal of biological chemistry |
High |
18258597
|
| 2008 |
Renal ischemia induces rapid loss of interaction between slit diaphragm proteins Neph1 and ZO-1, with redistribution of both proteins from cell membrane to cytoplasm. Recovery from ATP-depletion injury restores Neph1 tyrosine phosphorylation (mediated by Fyn), which is required for re-establishing Neph1-ZO-1 binding and their co-localization at the membrane. Fyn-mediated Neph1 phosphorylation significantly increases Neph1-ZO-1 binding. |
In vivo rat ischemia model; co-immunoprecipitation; cell culture ATP depletion; immunofluorescence; Fyn kinase assay |
The Journal of biological chemistry |
High |
18922801
|
| 2009 |
Neph1 interacts with large-conductance Ca2+-activated K+ (BK/Slo1) channels via all three extreme C-terminal Slo1 splice variants, as shown by reciprocal Co-IP from endogenous podocyte and neuron proteins and GST pulldown. Co-expression of Neph1 with Slo1 suppresses steady-state Slo1 surface expression in HEK293T cells. Conversely, siRNA knockdown of Neph1 in ciliary ganglion neurons increases surface Slo1 and BK current, while knockdown in podocytes decreases Slo1 surface expression and BK current. |
Reciprocal co-immunoprecipitation from endogenous proteins; GST pulldown; cell surface biotinylation; whole-cell electrophysiology; siRNA knockdown; confocal microscopy |
American journal of physiology. Cell physiology |
High |
19794150
|
| 2011 |
Neph1 and Nephrin can trans-interact across cells to induce cell adhesion (demonstrated in L fibroblasts lacking endogenous adhesion). Neph1 alone can induce cell adhesion. Trans-interaction of nephrin with Neph1 (or Neph3) is associated with down-regulation of nephrin tyrosine phosphorylation. |
L fibroblast cell adhesion assay; co-immunoprecipitation; phosphorylation analysis |
The Biochemical journal |
Medium |
21306299
|
| 2011 |
Motor protein Myo1c directly interacts with Neph1 in an actin-dependent manner and is required for targeting Neph1 to the podocyte cell membrane. Expression of dominant-negative Myo1c or siRNA depletion of Myo1c significantly reduces membrane localization of Neph1 and nephrin. Myo1c knockdown also impairs cell migration and tight junction formation. |
Co-immunoprecipitation in vivo and in vitro; dominant-negative expression; siRNA knockdown; cell surface fractionation; wound assay; transepithelial electric resistance |
Molecular and cellular biology |
High |
21402783
|
| 2012 |
The solution structure of the Neph1 cytoplasmic domain (Neph1-CD) was determined by SWAXS (radius of gyration 21.3 Å, max dimension 70 Å). A structural model of the Neph1-CD·ZO-1-PDZ1 complex was constructed; beyond the C-terminal Thr-His-Val motif, residues Lys-761 and Tyr-762 in Neph1 are critical for ZO-1 binding (individual alanine mutations abolished binding). |
Small/wide angle X-ray scattering (SWAXS); circular dichroism; in vitro and in vivo pulldown with mutagenesis |
The Journal of biological chemistry |
High |
22262837
|
| 2014 |
Inhibiting Neph1 signaling by transducing its cytoplasmic domain (Neph1CD) into podocytes reduces puromycin aminonucleoside (PAN)-induced Neph1 phosphorylation, retains Neph1 in lipid raft fractions, maintains Neph1 at the membrane, and protects against cytoskeletal damage and albumin leakage. Maintaining high membrane levels of Neph1 via chimeric overexpression increases podocyte resistance to PAN injury. |
Protein transduction; lipid raft fractionation; immunofluorescence; transepithelial permeability assay; zebrafish in vivo injury model |
The Journal of biological chemistry |
Medium |
24554715
|
| 2016 |
The full-length Myo1c adopts an extended S-shaped conformation in solution; Neph1 binds to the C-terminal tail of Myo1c without inducing significant conformational change. A critical residue in Neph1 required for Myo1c binding was identified; point mutation abolished the interaction in vitro and in live cells. FRAP analysis confirmed Myo1c mediates intracellular vesicular movement and membrane turnover of Neph1. |
Small angle X-ray scattering (SAXS); mutagenesis; in vitro binding assay; live-cell imaging; fluorescence recovery after photobleaching (FRAP) |
Molecular and cellular biology |
High |
27044863
|
| 2017 |
The Neph1-ZO-1 protein-protein interaction interface contains a druggable pocket involving both proteins. The small molecule isodesmosine (ISD) enhances Neph1 cytoplasmic domain–ZO-1 binding in vitro and in vivo, and ISD-treated podocytes are resistant to injury-induced transepithelial permeability loss. Mouse and zebrafish experiments confirm ISD protects from injury-induced renal damage. |
Computational structural screening; biochemical binding assay; in vitro podocyte permeability assay; mouse and zebrafish injury models |
Scientific reports |
Medium |
28935902
|
| 2017 |
CD80 (B7-1) interacts with Neph1 via their extracellular domains, as established by pulldown assay in HEK293 cells co-transfected with both proteins. CD80 overexpression in podocytes co-localizes with Neph1 and causes actin derangement. |
Co-immunoprecipitation/pulldown in HEK293 cells; immunofluorescence co-localization in podocytes |
Clinical and experimental nephrology |
Low |
29022109
|
| 2019 |
Homozygous mutations in KIRREL1 in patients with steroid-resistant nephrotic syndrome result in mutant KIRREL1 proteins that fail to localize to the podocyte cell membrane, indicating defective membrane trafficking. |
Patient genetics; immunofluorescence localization of mutant vs wild-type KIRREL1 in podocytes |
Kidney international |
Medium |
31472902
|
| 2021 |
NEPHRIN and NEPH1 are novel receptor proteins for hepatocyte growth factor (HGF), binding HGF directly through their extracellular domains (confirmed by surface plasmon resonance with purified recombinant proteins; NEPHRIN Kd ~20-fold higher affinity than NEPH1). HGF binding leads to phosphorylation of NEPHRIN and NEPH1 independently of the MET receptor. SHP-2 (PTPN11) mediates dephosphorylation of these proteins. HGF-induced phosphorylation promotes podocyte repair. |
Surface plasmon resonance with purified baculovirus-expressed recombinant proteins; molecular modeling; cell culture and Drosophila nephrocyte functional assays |
The Journal of biological chemistry |
High |
34391780
|
| 2022 |
KIRREL1 physically interacts with SAV1 and recruits SAV1 to cell-cell contact sites, thereby activating the Hippo pathway. Knockout of KIRREL1 increases YAP activity in neighboring cells. During liver regeneration in mice, KIRREL1 knockout enhances hepatic YAP activity, hepatocyte reprogramming, and biliary epithelial cell proliferation. |
Co-immunoprecipitation; knockout mouse model; in vivo liver regeneration assay; YAP activity reporter |
Nature communications |
High |
35177623
|
| 2022 |
KIRREL1 interacts with both SAV1 and LATS1/2, promoting LATS1/2 activation by MST1/2 (Hippo kinases), thereby suppressing YAP/TAZ oncoproteins. YAP/TAZ in turn directly induce KIRREL1 expression in a TEAD1-4-dependent manner, constituting a negative feedback loop. Transgenic expression of KIRREL1 blocks tumorigenesis in a mouse intrahepatic cholangiocarcinoma model. |
Co-immunoprecipitation; LATS kinase activity assay; CRISPR screen; TEAD reporter assay; transgenic mouse tumor model |
Cell reports |
High |
36044856
|
| 2022 |
KIRREL binds directly to SAV1 to activate the Hippo tumor suppressor pathway. KIRREL loss markedly promotes tumor growth in vivo. This was discovered through an in vivo CRISPR screen of cell surface proteins and a separate CRISPR screen using a Hippo pathway reporter. |
In vivo CRISPR proliferation screen; Hippo pathway reporter CRISPR screen; direct binding assay |
Proceedings of the National Academy of Sciences |
Medium |
35704761
|
| 2023 |
KIRREL1 knockdown inhibits proliferation and angiogenesis of gastric cancer cells; overexpression promotes them. These effects are mediated through the PI3K/AKT/mTOR pathway: KIRREL1 silencing represses P-PI3K, P-AKT, P-mTOR, HIF-1α, and VEGF, while overexpression stimulates them. The AKT agonist IGF-1 and inhibitor LY294002 reverse these effects. |
Lentiviral knockdown/overexpression; western blot; pharmacological pathway inhibition/activation |
Journal of cellular and molecular medicine |
Medium |
37909722
|
| 2024 |
PRRXL1 homeodomain transcription factor directly regulates Neph1 transcription by binding to four intronic regions of the Neph1 gene (identified by ChIP), preventing premature Neph1 expression in dorsal horn superficial laminae at E14.5. Loss-of-function experiments show Neph1 is required for neurite branching, especially at distal neurites. |
Chromatin immunoprecipitation (ChIP); in situ hybridization; loss-of-function (Neph1 KO or knockdown); neurite morphometry |
Neural development |
Medium |
39049046
|
| 2025 |
Cryo-electron tomography of human kidney tissue resolves the slit diaphragm as a fishnet-like lattice with crisscrossing strands at ~90°. An atomic model based on the Nephrin-Neph1 heterodimer fits the structure, with ~9 nm spacing in humans (vs 12.3 nm in mice and 15 nm in Drosophila), indicating the SD is a conserved heterodimeric fishnet assembly. |
Cryo-electron tomography of native human and mouse kidney tissue; atomic model fitting |
bioRxivpreprint |
Medium |
bio_10.1101_2025.09.24.678239
|