Affinage

MMP24

Matrix metalloproteinase-24 · UniProt Q9Y5R2

Length
645 aa
Mass
73.2 kDa
Annotated
2026-06-10
28 papers in source corpus 13 papers cited in narrative 16 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/7 claims corpus-supported (86%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MMP24 (MT5-MMP) is a brain-enriched membrane-type matrix metalloproteinase that couples extracellular and intracellular proteolytic functions to neural stem cell regulation, nociception, and amyloidogenic APP processing (PMID:19805319, PMID:24952463, PMID:26202697). Its catalytic zinc-binding domain activates progelatinase A (MMP2) and preferentially degrades proteoglycans among extracellular matrix components, an activity abolished by mutation of the HEXGH zinc-binding motif and sensitive to TIMP-2 (PMID:10085137, PMID:10363975, PMID:10622708). Surface presentation of the enzyme is controlled by recycling: its C-terminal EWV motif binds the PDZ adaptor Mint-3 to retrieve internalized MT5-MMP back to the plasma membrane, and loss of this signal or Mint-3 depletion reduces surface activity (PMID:14990567). Activation requires PCSK6, which recognizes and cleaves the RRRNKR propeptide motif to generate active enzyme (PMID:38216110). In neurons, MT5-MMP sheds the N-cadherin ectodomain to regulate adult neural stem cell activation and quiescence and to modulate nociceptor neuro-immune interactions, with knockout mice showing altered thermal sensitivity and impaired stem cell activation (PMID:19805319, PMID:24952463). Acting as an η-secretase, MT5-MMP associates with APP and promotes amyloidogenic processing, raising Aβ, C99, and sAPP95 without altering α-, β-, or γ-secretase activities, in part by directing APP and C99 into the endolysosomal system (PMID:26202697, PMID:28119565, PMID:34117802). This pro-amyloidogenic activity is only partly proteolytic: the C-terminal non-catalytic and intracellular domains govern C99 sorting and stability through brain-derived binding partners including N4BP2L1, EIG121, BIN1, and TMX3, and deletion of these domains routes C99 to proteasomal degradation [PMID:34117802, PMID:38345408, PMID:bio_10.1101_2025.05.22.655451].

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 1999 High

    Established MT5-MMP as a catalytically active metalloproteinase capable of activating a downstream proteinase, defining its core enzymatic function and zinc-dependent mechanism.

    Evidence Co-expression in MDCK cells with active-site (Glu→Ala) mutagenesis, plus in vitro assays with recombinant catalytic domain and purified soluble enzyme

    PMID:10085137 PMID:10363975 PMID:10622708

    Open questions at the time
    • Physiological MMP2 activation in vivo not demonstrated
    • Full ECM substrate repertoire beyond proteoglycans not defined
  2. 1999 Medium

    Localized MT5-MMP to the plasma membrane and showed it can shed as a soluble proteinase, distinguishing it from membrane-retained MT-MMPs.

    Evidence Immunofluorescence and Western blot of transfected COS-7 and conditioned-media analysis

    PMID:10085137 PMID:10363975

    Open questions at the time
    • Shedding mechanism and protease responsible not identified
    • Relative balance of membrane vs soluble pools in neurons unknown
  3. 2004 High

    Identified the trafficking logic controlling surface activity, showing a C-terminal PDZ-binding motif recruits Mint-3 to recycle the enzyme to the membrane.

    Evidence Yeast two-hybrid, EWV deletion mutagenesis, Mint-3 siRNA, surface activity assays

    PMID:14990567

    Open questions at the time
    • Endocytic route and other adaptors not mapped
    • Link to APP processing not yet examined
  4. 2009 High

    Connected MT5-MMP proteolysis to physiology by showing N-cadherin cleavage in nociceptors controls neuro-immune interactions and pain sensitivity.

    Evidence Mmp24 knockout mice, behavioral nociception assays, N-cadherin cleavage analysis

    PMID:19805319

    Open questions at the time
    • Direct vs indirect N-cadherin cleavage in vivo not fully separated
    • Mast-cell interaction mechanism incompletely defined
  5. 2014 High

    Extended the N-cadherin-shedding function to adult neural stem cells, establishing a role in stem cell activation and quiescence.

    Evidence MT5-MMP knockout mice, N-cadherin shedding and NSC functional assays in vivo

    PMID:24952463

    Open questions at the time
    • Downstream signaling from N-cadherin shedding not resolved
    • Dispensable for NSC identity—upstream regulators unknown
  6. 2015 High

    Defined MT5-MMP as an η-secretase that physically associates with APP and drives amyloidogenic processing independent of classical secretases.

    Evidence Reciprocal Co-IP and co-localization in HEKswe cells, MT5-MMP KO × 5xFAD cross, ELISA/Western

    PMID:26202697

    Open questions at the time
    • Precise cleavage site generating sAPP95 not mapped here
    • Causal contribution to disease pathology not established
  7. 2017 Medium

    Linked the pro-amyloidogenic effect to subcellular trafficking by showing MT5-MMP localizes to early endosomes and routes APP/C99 there.

    Evidence Immunofluorescence, subcellular fractionation, Aβ40 ELISA in HEKswe cells

    PMID:28119565

    Open questions at the time
    • Single cell model
    • Trafficking machinery directing endosomal sorting unidentified
  8. 2021 High

    Dissected proteolytic from non-proteolytic contributions, showing the C-terminal domains sort C99 to the endolysosomal system and protect it from proteasomal degradation even without catalytic activity.

    Evidence Domain deletion and catalytic-dead mutagenesis, fractionation, proteasome inhibitors, Western blot in HEKswe cells

    PMID:34117802

    Open questions at the time
    • Direct C99-binding interface not structurally defined
    • Single cell system
  9. 2021 Medium

    Revealed transcriptional/post-transcriptional control in pain, with FTO-mediated m6A demethylation enhancing MMP24 translation to drive ERK-dependent hypersensitivity.

    Evidence MeRIP-seq, RIP, FTO overexpression/knockdown, ERK assays, neuropathic pain behavior

    PMID:33995105

    Open questions at the time
    • Direct enzymatic substrate driving ERK activation unidentified
    • Single lab
  10. 2024 High

    Identified the activating protease, showing PCSK6 cleaves the RRRNKR propeptide motif to generate active MT5-MMP and enable amyloidogenic processing.

    Evidence Co-IP, cleavage-motif mutagenesis, PCSK6 knockdown in N2AAPP cells and AAV KD in APP23/PS45 mice

    PMID:38216110

    Open questions at the time
    • Whether PCSK6 is the sole physiological activator unknown
    • Spatial site of activation not defined
  11. 2024 Medium

    Mapped organelle-dependence of η-secretase activity and identified C-terminal-domain binding partners that enhance sAPPη production.

    Evidence Subcellular-targeted fusion constructs with sAPPη ELISA; yeast two-hybrid screen of brain cDNA with functional follow-up

    PMID:38345408

    Open questions at the time
    • Direct vs indirect nature of N4BP2L1/EIG121/BIN1/TMX3 effects not resolved
    • Endogenous relevance of nuclear/cytosolic localization unclear
  12. 2025 Medium

    Resolved the intracellular domain as a trafficking determinant, showing specific IC mutations divergently control C99 sorting, degradation, and Aβ output.

    Evidence IC-domain mutagenesis, high-content imaging, proximity ligation assay in human cell lines (preprint)

    PMID:bio_10.1101_2025.05.22.655451

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Specific motifs/adaptors mediating each IC-cluster effect not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How MT5-MMP's dual proteolytic and trafficking-scaffold functions are coordinated in vivo and whether targeting them alters Alzheimer pathology remains unresolved.
  • No structural model of the C-terminal/IC domain interactions with C99
  • Therapeutic modulation untested
  • Integration of pain, NSC, and amyloid roles in the same neurons unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 6 GO:0016787 hydrolase activity 3 GO:0060089 molecular transducer activity 3
Localization
GO:0005886 plasma membrane 3 GO:0005768 endosome 2 GO:0005634 nucleus 1 GO:0005829 cytosol 1
Pathway
R-HSA-9609507 Protein localization 4 R-HSA-1643685 Disease 3

Evidence

Reading pass · 16 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 MT5-MMP (MMP24) activates progelatinase A (MMP2) when co-expressed in MDCK cells, and this activity is dependent on proteolytic activity since a Glu→Ala mutation in the zinc-binding motif (HE255LGH) abolishes activation. Co-expression in MDCK cells, active-site mutagenesis The Journal of biological chemistry High 10085137
1999 MT5-MMP tends to shed from the cell surface as a soluble proteinase, distinguishing it from other MT-MMPs which remain membrane-bound. Cell expression and protein analysis (Western blot, conditioned media analysis) The Journal of biological chemistry Medium 10085137
1999 Human MT5-MMP (MMP24) localizes to the plasma membrane when expressed in COS-7 cells, as shown by immunofluorescence and Western blot. Immunofluorescence and Western blot of transfected COS-7 cells Cancer research Medium 10363975
1999 The catalytic domain of MT5-MMP cleaves progelatinase A to generate the Mr 62,000 active form, demonstrated using a GST-fusion catalytic domain expressed in E. coli. In vitro proteolytic assay with recombinant catalytic domain (GST fusion) Cancer research High 10363975
1999 Purified soluble MT5-MMP activates progelatinase A in a TIMP-2-sensitive fashion, and preferentially cleaves proteoglycans among extracellular matrix components. Biochemical purification, in vitro proteolytic assay with ECM substrate panel FEBS letters High 10622708
2004 The C-terminal EWV motif of MT5-MMP serves as a retrieval signal for internalized MT5-MMP by interacting with the PDZ domain protein Mint-3, which recycles MT5-MMP to the plasma membrane. Deletion of the EWV signal impairs recycling and decreases surface activity. Mint-3 knockdown by siRNA decreases MT5-MMP activity. Yeast two-hybrid screening, deletion mutagenesis, siRNA knockdown, cell surface activity assays The Journal of biological chemistry High 14990567
2009 MT5-MMP cleaves N-cadherin in peptidergic nociceptors (CGRP+ dorsal root ganglion neurons); Mmp24-deficient mice show enhanced basal thermal sensitivity and failure to develop thermal hyperalgesia during inflammation, correlating with altered N-cadherin-mediated neuro-immune cell interactions. Mmp24 knockout mouse, behavioral nociception assays, N-cadherin cleavage analysis Proceedings of the National Academy of Sciences of the United States of America High 19805319
2014 MT5-MMP cleaves the N-cadherin ectodomain in adult neural stem cells (NSCs) and ependymocytes of the subependymal zone. MT5-MMP-mediated N-cadherin shedding is required for proper activation of NSCs under physiological and regenerative conditions but is dispensable for NSC generation and identity. MT5-MMP knockout mice, N-cadherin shedding assays, NSC functional assays in vivo Nature cell biology High 24952463
2015 MT5-MMP co-localizes and co-immunoprecipitates with APP in HEKswe cells and promotes amyloidogenic APP processing, increasing levels of Aβ, C99, and a soluble APP fragment of 95 kDa (sAPP95). MT5-MMP deficiency in 5xFAD mice reduces Aβ, C99, and sAPP95 levels without altering α-, β-, or γ-secretase activities. Co-immunoprecipitation, co-localization (immunofluorescence), MT5-MMP KO × 5xFAD cross, ELISA, Western blot Cellular and molecular life sciences : CMLS High 26202697
2017 MT5-MMP expressed in HEKswe cells localizes to early endosomes and promotes trafficking of APP and C99 into early endosomes, as well as increased Aβ40 in cell supernatants, establishing a pro-amyloidogenic role via endosomal trafficking. Immunofluorescence co-localization, subcellular fractionation, ELISA in transfected HEKswe cells Frontiers in molecular neuroscience Medium 28119565
2021 Deletion of C-terminal non-catalytic domains of MT5-MMP hampers its ability to process APP and release sAPP95. Catalytically inactive MT5-MMP variants still increase Aβ and promote APP/C99 sorting to the endolysosomal system via interactions of the C-terminal portion with C99. Deletion of the C-terminal domain causes proteasomal degradation of C99 and prevents Aβ accumulation. Domain deletion mutagenesis, catalytic-dead variants, subcellular fractionation, proteasome inhibitors, Western blot in HEKswe cells FASEB journal : official publication of the Federation of American Societies for Experimental Biology High 34117802
2021 FTO (m6A eraser) binds to Mmp24 mRNA in spinal cord neurons after spinal nerve ligation, reducing m6A modification and facilitating MMP24 translation. MMP24 upregulation in spinal cord neurons promotes ERK activation and nociceptive hypersensitivity. MeRIP-seq, RNA immunoprecipitation, FTO overexpression/knockdown in spinal neurons, ERK activation assays, neuropathic pain behavioral tests Frontiers in pharmacology Medium 33995105
2024 PCSK6 cleaves and activates MT5-MMP by recognizing the RRRNKR sequence in the MT5-MMP N-terminal propeptide domain. Mutation or knockout of this cleavage motif prevents PCSK6 from interacting with and cleaving MT5-MMP, reducing amyloidogenic APP processing. Co-immunoprecipitation, site-directed mutagenesis of cleavage motif, PCSK6 knockdown in N2AAPP cells and AAV-mediated KD in APP23/PS45 mice Experimental neurology High 38216110
2024 MT5-MMP localizes to the nucleus, cytosol, and cytosolic subcellular granules in CHO cells stably expressing APP751. Using subcellular-targeted MT5-MMP fusion proteins, η-secretase (sAPPη) activity was highest when MT5-MMP was directed to the endosome, Golgi, plasma membrane, or mitochondria. Subcellular-targeted fusion protein constructs, sAPPη ELISA, immunofluorescence localization in CHO-APP751 cells Journal of cellular physiology Medium 38345408
2024 Yeast two-hybrid screening identified N4BP2L1, TMX3, EIG121, BIN1, RUFY4, HTRA1, and TMEM199 as binding partners of the MT5-MMP C-terminal domain in a human brain cDNA library. Binding of N4BP2L1, EIG121, BIN1, or TMX3 resulted in significant increase in sAPPη production. Yeast two-hybrid screen, co-expression functional assay (sAPPη ELISA) Journal of cellular physiology Medium 38345408
2025 Specific amino acid mutations in the intracellular (IC) domain of MT5-MMP induce C99 degradation and decrease Aβ levels, while mutations in different IC clusters have divergent effects. The IC domain regulates subcellular trafficking of C99 through the endomembrane system and proximity with C99 as shown by proximity ligation assay. Domain deletion/substitution mutagenesis, high-content imaging, proximity ligation assay, co-transfection in human cell lines bioRxivpreprint Medium bio_10.1101_2025.05.22.655451

Source papers

Stage 0 corpus · 28 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 Identification and characterization of the fifth membrane-type matrix metalloproteinase MT5-MMP. The Journal of biological chemistry 215 10085137
1999 Identification and characterization of human MT5-MMP, a new membrane-bound activator of progelatinase a overexpressed in brain tumors. Cancer research 202 10363975
2014 MT5-MMP regulates adult neural stem cell functional quiescence through the cleavage of N-cadherin. Nature cell biology 88 24952463
2015 MT5-MMP is a new pro-amyloidogenic proteinase that promotes amyloid pathology and cognitive decline in a transgenic mouse model of Alzheimer's disease. Cellular and molecular life sciences : CMLS 86 26202697
2009 Metalloproteinase MT5-MMP is an essential modulator of neuro-immune interactions in thermal pain stimulation. Proceedings of the National Academy of Sciences of the United States of America 65 19805319
2019 Emerging Alternative Proteinases in APP Metabolism and Alzheimer's Disease Pathogenesis: A Focus on MT1-MMP and MT5-MMP. Frontiers in aging neuroscience 55 31607898
2012 MT5-MMP, ADAM-10, and N-cadherin act in concert to facilitate synapse reorganization after traumatic brain injury. Journal of neurotrauma 48 22489706
2004 Mint-3 regulates the retrieval of the internalized membrane-type matrix metalloproteinase, MT5-MMP, to the plasma membrane by binding to its carboxyl end motif EWV. The Journal of biological chemistry 46 14990567
1999 Expression, purification and characterization of recombinant mouse MT5-MMP protein products. FEBS letters 44 10622708
2000 Developmental regulation of membrane type-5 matrix metalloproteinase (MT5-MMP) expression in the rat nervous system. Brain research 43 10727639
2017 MT5-MMP Promotes Alzheimer's Pathogenesis in the Frontal Cortex of 5xFAD Mice and APP Trafficking in vitro. Frontiers in molecular neuroscience 31 28119565
2021 MMP24 Contributes to Neuropathic Pain in an FTO-Dependent Manner in the Spinal Cord Neurons. Frontiers in pharmacology 24 33995105
2022 Loss of REST in breast cancer promotes tumor progression through estrogen sensitization, MMP24 and CEMIP overexpression. BMC cancer 20 35177031
2022 MT5-MMP promotes neuroinflammation, neuronal excitability and Aβ production in primary neuron/astrocyte cultures from the 5xFAD mouse model of Alzheimer's disease. Journal of neuroinflammation 19 35277173
2016 MT5-MMP, just a new APP processing proteinase in Alzheimer's disease? Journal of neuroinflammation 18 27349644
2024 Salidroside inhibited the proliferation of gastric cancer cells through up-regulating tumor suppressor miR-1343-3p and down-regulating MAP3K6/MMP24 signal molecules. Cancer biology & therapy 14 38436092
2001 Expression and localization of transcripts of MT5-MMP and its related MMP in the ovary of the medaka fish Oryzias latipes. Biochimica et biophysica acta 11 11267666
2021 MT5-MMP controls APP and β-CTF/C99 metabolism through proteolytic-dependent and -independent mechanisms relevant for Alzheimer's disease. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 8 34117802
2021 Changes in the expression of membrane type-matrix metalloproteinases genes (MMP14, MMP15, MMP16, MMP24) during treatment and their potential impact on the survival of patients with non-small cell lung cancer (NSCLC). Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 8 35062057
2007 Identification of a novel human MT5-MMP transcript variant in multipotent NT2 cells. FEBS letters 6 18062926
2021 Deficiency in MT5-MMP Supports Branching of Human iPSCs-Derived Neurons and Reduces Expression of GLAST/S100 in iPSCs-Derived Astrocytes. Cells 5 34359875
2009 [Inhibitory effects of RNA interference on MMP-24 expression and invasiveness of ovarian cancer SKOV(3) cells]. Nan fang yi ke da xue xue bao = Journal of Southern Medical University 5 19403421
2024 PCSK6 exacerbates Alzheimer's disease pathogenesis by promoting MT5-MMP maturation. Experimental neurology 4 38216110
2024 Suppression of MT5-MMP Reveals Early Modulation of Alzheimer's Pathogenic Events in Primary Neuronal Cultures of 5xFAD Mice. Biomolecules 2 39766352
2025 Membrane-Type 5 Matrix Metalloproteinase (MT5-MMP): Background and Proposed Roles in Normal Physiology and Disease. Biomolecules 1 40867559
2024 Identification of binding partners that facilitate membrane-type 5 matrix metalloproteinase (MT5-MMP) processing of amyloid precursor protein. Journal of cellular physiology 1 38345408
2024 The Effect of Curcumin on the Activity of MMP-17 and MMP-24 in Hepatocytes of Mice Exposed to Thioacetamide. Reports of biochemistry & molecular biology 1 40330566
2025 Downregulation of MT2-MMP and MT5-MMP in ulcerative colitis serves a diagnostic predictor and potential therapeutic targets. Molecular biology reports 0 40178713

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