| 2024 |
Cryo-EM structure of the human complete Mediator complex reveals that the CKM binds to core Mediator (cMED) through an intrinsically disordered region (IDR) in MED13 and HEAT repeats in MED12. The MED13 IDR occludes binding of RNA Polymerase II and MED26 to cMED and sterically hinders cMED-PIC assembly with TFIIH and the +1 nucleosome, thereby inhibiting transcription activation. |
Cryo-electron microscopy structural determination with functional validation of CKM-cMED interaction and transcription inhibition mechanism |
bioRxivpreprint |
High |
bio_10.1101_2024.07.01.601608
|
| 2013 |
Fbw7, a tumor suppressor and SCF ubiquitin ligase, binds CDK8-Mediator and targets MED13 (and MED13L) for proteasomal degradation. MED13/13L physically link the CDK8 module to Mediator; loss of Fbw7 increases CDK8 module-Mediator association, revealing MED13 as a physical linker whose abundance controls CDK8 module-Mediator dynamics. |
Co-immunoprecipitation, ubiquitin ligase substrate assay, genetic loss-of-function (Fbw7 KO), protein stability assays |
Genes & development |
High |
23322298
|
| 2003 |
In S. pombe, spTrap240 (TRAP240/MED13 homolog) is stably associated with a larger Mediator form also containing Srb8, Srb10, and Srb11 subunits. Mediator containing this module is isolated only free of RNA Polymerase II, whereas Mediator lacking this module associates with the polymerase, establishing that the TRAP240/MED13-containing submodule negatively regulates transcription by preventing Mediator-Pol II association. |
Biochemical fractionation, co-purification, genetic phenotypic analysis, transcriptional profiling |
Proceedings of the National Academy of Sciences of the United States of America |
High |
12738880
|
| 2008 |
In Drosophila, Med13 (encoded by skuld) physically interacts with Pygopus through its N-terminal domain and is required for transcription of Wingless target genes downstream of beta-catenin stabilization, establishing Med13 as a mediator of Wnt/Wingless target gene activation by recruiting the Mediator complex. |
Genetic epistasis (in vivo), RNAi knockdown in cell culture, co-immunoprecipitation (physical interaction with Pygopus), reporter assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
18451032
|
| 2017 |
In S. cerevisiae, oxidative stress triggers SCFGrr1-dependent ubiquitin-mediated degradation of Med13 via a degron in residues 742-844 of its intrinsically disordered region (IDR). Cyclin C-Cdk8 phosphorylation of Med13 primes this phosphodegron, and the CWI MAPK Slt2 phosphorylates cyclin C to release it from Med13 and subsequently modifies Med13 to stimulate SCFGrr1-mediated destruction, thereby releasing cyclin C into the cytoplasm to promote mitochondrial hyperfragmentation and cell death. |
Deletion mutagenesis mapping of degron, in vivo phosphorylation assays, genetic epistasis with SCFGrr1/Slt2 mutants, fluorescence microscopy of cyclin C localization, mitochondrial fragmentation assay |
Molecular biology of the cell |
High |
29212878
|
| 2018 |
In S. cerevisiae, the AMP kinase Snf1 activates a second SCFGrr1-responsive degron in Med13 following oxidative stress. Deletion of Snf1 results in nuclear retention of cyclin C and failure to induce mitochondrial fragmentation, defining a second pathway (CWI MAPK pathway and Snf1 together) that cooperatively controls Med13 degradation and cyclin C release. |
Genetic deletion (snf1Δ), in vivo protein stability assays, fluorescence microscopy of cyclin C localization, heterologous degron fusion assay, mitochondrial fragmentation assay |
Microbial cell |
Medium |
30175106
|
| 2014 |
Cardiac-specific overexpression of MED13 in transgenic mice confers a lean phenotype associated with increased lipid uptake, beta-oxidation, and mitochondrial content in white adipose tissue and liver. Parabiosis experiments reveal that circulating factor(s) from MED13cTg mice promote enhanced metabolism in wild-type partners, establishing that cardiac MED13 acts within the heart to regulate systemic energy homeostasis through a humoral signaling mechanism. |
Cardiac-specific transgenic overexpression, parabiosis experiments, metabolic phenotyping (indirect calorimetry, beta-oxidation assays), gene expression analysis |
EMBO molecular medicine |
High |
25422356
|
| 2014 |
In Drosophila, heart/muscle-specific knockdown of MED13 increases susceptibility to obesity. Genetic epistasis experiments demonstrate that Wingless functions downstream of MED13 within a muscle-regulatory pathway controlling systemic energy homeostasis, establishing MED13 as an upstream regulator of Wingless signaling in striated muscle to control fat storage. |
Tissue-specific RNAi knockdown, RNAi genetic screen of 150 secreted protein genes, epistasis experiments (double knockdown), metabolic phenotyping (lipid storage) |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
24979807
|
| 2016 |
Skeletal muscle-specific deletion of MED13 in mice activates a metabolic gene program enhancing muscle glucose uptake and glycogen storage, insulin-sensitizes skeletal muscle, and prevents hepatic lipid accumulation. MED13 suppresses glucose metabolism genes in skeletal muscle by inhibiting the nuclear receptor NURR1 and MEF2 transcription factor, revealing a tissue-specific transcriptional repressor function of MED13 distinct from its cardiac role. |
Skeletal muscle-specific conditional knockout (Cre-lox), RNA-seq gene expression profiling, metabolic phenotyping (glucose uptake, glycogen measurement, hepatic lipid staining), transcription factor interaction analysis |
Genes & development |
High |
26883362
|
| 2018 |
MED13 is required for zygotic genome activation (ZGA) in mouse embryos and regulates expression of the embryo-specific chromatin remodeling complex esBAF. MED13's role in ZGA is mediated in part through interactions with E2F transcription factors. MED13's paralog MED13L partially compensates for MED13 loss during preimplantation but cannot rescue postimplantation development. |
siRNA knockdown, conditional knockout, embryo culture with developmental phenotyping, gene expression analysis, co-immunoprecipitation with E2F transcription factors |
Biology of reproduction |
Medium |
29325037
|
| 2021 |
Loss of MED13 causes resistance to alkylating agents by upregulating cyclin D1 (CCND1). MED13 directly binds to CCND1 regulatory elements to suppress its expression, and MED13 KO cells have a shorter G1 phase. CDK8/19 inhibitor Senexin A stabilizes MED13 protein and in combination with alkylating agents reduces cancer cell viability. |
Genome-wide CRISPR-Cas9 screen, MED13 KO, transcriptome analysis, ChIP (MED13 binding to CCND1 regulatory elements), cell viability assays, CDK8/19 inhibitor treatment |
Nucleic acids research |
Medium |
33444446
|
| 2024 |
In S. cerevisiae, Med13 translocates from the nucleus to the cytoplasm following nitrogen starvation, where it colocalizes with P-bodies and promotes recruitment of the decapping activator Edc3 into P-bodies. Med13 also orchestrates the autophagic degradation of Edc3 through a selective cargo-hitchhiking autophagy pathway using Ksp1 as the autophagic receptor protein, revealing a transcription-independent cytoplasmic function of Med13 in P-body assembly and mRNA regulation. |
Fluorescence microscopy (colocalization of Med13 with P-body markers), deletion mutant analysis, autophagic degradation assays, genetic epistasis |
Molecular biology of the cell |
Medium |
39320938
|
| 2024 |
In S. cerevisiae, Ksp1 (a casein II-like kinase) acts as an autophagic receptor protein for Ssn2/Med13, mediating its selective vacuolar degradation via Snx4-assisted autophagy following nitrogen starvation. Ksp1 directly associates with Atg8 through an AIM/LIR motif, and mutating the LDS site in Atg8 prevents Ksp1 autophagic degradation. Ksp1 is recruited early to phagophore assembly sites by Atg29. |
Yeast two-hybrid, mutational analysis of AIM/LIR and LDS sites, fluorescence microscopy of phagophore assembly sites, autophagic degradation assays, genetic epistasis |
Autophagy |
Medium |
37733395
|
| 2001 |
Loss of the Drosophila Med13 homolog (kohtalo/skuld) causes eye disc cells to maintain inappropriate expression of decapentaplegic and atonal and fail to differentiate, while antennal disc cells lose Distal-less expression. These phenotypes are identical to those of Med12 (blind spot) loss, are not rescued by activation of Hedgehog or Notch pathways, and occur without loss of cell proliferation or survival, indicating Med12 and Med13 act together to mediate a specific developmental signal. |
Genetic loss-of-function (mutant clonal analysis), epistasis with Hedgehog and Notch pathway activation, immunostaining for cell fate markers |
Development |
Medium |
11171343
|
| 2019 |
Med13 represses thyroid hormone receptor (TR) response genes in the heart. Cardiomyocyte-specific deletion of Med13 exacerbates cardiac dysfunction in hypothyroid mice (PTU-treated), and unbiased RNA-seq defined TH-dependent gene expression changes regulated by Med13, establishing Med13 as a transcriptional repressor in the cardiac thyroid hormone signaling pathway. |
Cardiomyocyte-specific conditional knockout (Med13cKO), RNA-seq transcriptome analysis, echocardiography, PTU-induced hypothyroidism model, T3 rescue experiment |
Journal of molecular and cellular cardiology |
Medium |
30769017
|
| 2024 |
In Drosophila, Med13 cooperates with Med12 but not with Cdk8 or CycC (the enzymatic subunits) to support SAYP/Bap170-dependent enhancer-driven transcription at transgene promoters and endogenous loci. Med12 and Med13 do not form sufficiently stable interactions with SAYP/Bap170 in extract; their cooperation is local at regulatory elements, with SAYP/Bap170 presence required for stable recruitment of Med12/Med13 to loci. |
Transgene reporter assays, genetic knockdown/mutants, ChIP at endogenous loci, co-immunoprecipitation attempts (negative for stable complex) |
International journal of molecular sciences |
Medium |
39684492
|
| 2026 |
Knockdown of Med13 in cortical neurons via in-utero electroporation impairs radial migration, callosal (contralateral) projection, and dendritic complexity. Mass spectrometry of MED13-deleted SH-SY5Y cells identified PLXNA4 as a downstream dysregulated protein; overexpression of PlxnA4 rescues impaired radial migration and callosal projection (but not dendritic complexity) in Med13-knockdown neurons, placing Med13 upstream of PlxnA4 in cortical development. |
In-utero electroporation knockdown, immunofluorescence/confocal imaging, mass spectrometry proteomics, rescue overexpression of PlxnA4 |
Communications biology |
Medium |
41663567
|
| 2022 |
In Drosophila, Skd/Med13 and glycolytic enzymes are co-upregulated in response to alpha-synuclein-associated neurodegeneration. Co-expression of skd/Med13 RNAi with alpha-synuclein synergistically increases the ratio of oxidized-to-reduced glutathione, worsening neurodegeneration. This neurodegeneration can be suppressed by overexpression of a glycolytic enzyme or treatment with deferoxamine, and the functional relationship between alpha-synuclein, MED13, and glycolytic enzymes is conserved in mice. |
Drosophila genetic screen (3471 mutant chromosomes), RNAi co-expression, glutathione oxidation assay, pharmacological rescue (deferoxamine), cross-species validation in mice |
Cell reports |
Medium |
36543134
|