Affinage

MATN1

Matrilin-1 · UniProt P21941

Length
496 aa
Mass
53.7 kDa
Annotated
2026-06-10
100 papers in source corpus 1 papers cited in narrative 1 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 2/3 claims corpus-supported (67%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Matrilin-1 (MATN1/CMP) is a cartilage extracellular matrix protein that promotes adhesion and spreading of chondrocytes and fibroblasts by binding directly to the integrin α1 subunit of α1β1 integrin (PMID:10196235). This adhesive activity is integrin-specific: blocking antibodies against the α1 or β1 subunits abolish CMP-induced cell adhesion, whereas antibodies to other integrin subunits have little effect, and co-immunoprecipitation of radiolabeled CMP with integrin α1 confirms a direct association (PMID:10196235). Its spreading-promoting function is synergistically enhanced in the presence of native, but not denatured, type II collagen (PMID:10196235). Beyond this integrin-mediated adhesion role, no further mechanistic detail on matrilin-1 in cartilage matrix assembly has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 1 step
  1. 1999 Medium

    Established that matrilin-1 is not merely a structural matrix component but an active adhesive ligand, identifying integrin α1β1 as its direct cell-surface receptor and pinpointing the α1 subunit as the binding partner.

    Evidence Cell adhesion/spreading assays on CMP-coated surfaces with integrin subunit-specific blocking antibodies, plus co-immunoprecipitation of radiolabeled CMP with integrin α1 and synergy assays with native type II collagen

    PMID:10196235

    Open questions at the time
    • The CMP domain mediating integrin α1 binding was not mapped
    • The molecular basis of the synergy with native type II collagen was not defined
    • Single-lab finding without independent reciprocal confirmation of the direct α1 interaction

Open questions

Synthesis pass · forward-looking unresolved questions
  • How matrilin-1 contributes to cartilage matrix assembly and development at the molecular level, and the structural determinants of its receptor and collagen interactions, remain unresolved.
  • No structural model of the integrin α1β1 interaction surface
  • No in vivo phenotype linking the adhesive activity to cartilage development
  • Mechanism of collagen-dependent spreading synergy uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098631 cell adhesion mediator activity 1
Localization
GO:0031012 extracellular matrix 1
Partners

Evidence

Reading pass · 1 per-paper finding extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 Cartilage matrix protein (CMP/matrilin-1) promotes cell adhesion and spreading of chondrocytes and fibroblasts via integrin α1β1. Monoclonal antibody to integrin α1 or β1 abolished CMP-induced cell adhesion, while antibodies to other integrin subunits had little effect. Co-immunoprecipitation of 125I-CMP with integrin α1 from cell lysates confirmed direct association with the α1 subunit. Synergistic spreading enhancement required native (not denatured) type II collagen. Cell adhesion assay on CMP-coated dishes, blocking antibodies to specific integrin subunits, co-immunoprecipitation of radiolabeled CMP with integrin α1 from cell lysates The Journal of biological chemistry Medium 10196235

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 A mutation in human CMP-sialic acid hydroxylase occurred after the Homo-Pan divergence. Proceedings of the National Academy of Sciences of the United States of America 454 9751737
2002 Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution. Proceedings of the National Academy of Sciences of the United States of America 247 12192086
2021 Cyclic CMP and cyclic UMP mediate bacterial immunity against phages. Cell 212 34644530
2010 Structural and thermodynamic characterization of the TYK2 and JAK3 kinase domains in complex with CP-690550 and CMP-6. Journal of molecular biology 186 20478313
2004 Chemoenzymatic synthesis of CMP-sialic acid derivatives by a one-pot two-enzyme system: comparison of substrate flexibility of three microbial CMP-sialic acid synthetases. Bioorganic & medicinal chemistry 182 15556760
1994 The structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules. Protein science : a publication of the Protein Society 163 7756988
1996 Expression cloning of the Golgi CMP-sialic acid transporter. Proceedings of the National Academy of Sciences of the United States of America 141 8755516
2001 Overexpression of sialyltransferase CMP-sialic acid:Galbeta1,3GalNAc-R alpha6-Sialyltransferase is related to poor patient survival in human colorectal carcinomas. Cancer research 106 11389097
2009 The CMP-legionaminic acid pathway in Campylobacter: biosynthesis involving novel GDP-linked precursors. Glycobiology 105 19282391
2007 Human UMP-CMP kinase 2, a novel nucleoside monophosphate kinase localized in mitochondria. The Journal of biological chemistry 101 17999954
1998 Mutants of the CMP-sialic acid transporter causing the Lec2 phenotype. The Journal of biological chemistry 96 9685366
1980 CMP-N-acetylneuraminic acid: isolation from and penetration into mouse liver microsomes. Cell 96 7363326
2002 Characterization of human UMP/CMP kinase and its phosphorylation of D- and L-form deoxycytidine analogue monophosphates. Cancer research 90 11912132
1998 The synthesis of sialylated oligosaccharides using a CMP-Neu5Ac synthetase/sialyltransferase fusion. Nature biotechnology 89 9702777
2000 Large-scale production of CMP-NeuAc and sialylated oligosaccharides through bacterial coupling. Applied microbiology and biotechnology 80 10772462
1999 Phosphorylation of deoxycytidine analog monophosphates by UMP-CMP kinase: molecular characterization of the human enzyme. Molecular pharmacology 80 10462544
1985 CMP-NeuNAc:poly-alpha-2,8-sialosyl sialyltransferase and the biosynthesis of polysialosyl units in neural cell adhesion molecules. The Journal of biological chemistry 79 4044605
2018 Carboxymethyl pachyman (CMP) reduces intestinal mucositis and regulates the intestinal microflora in 5-fluorouracil-treated CT26 tumour-bearing mice. Food & function 78 29756138
2019 Human species-specific loss of CMP-N-acetylneuraminic acid hydroxylase enhances atherosclerosis via intrinsic and extrinsic mechanisms. Proceedings of the National Academy of Sciences of the United States of America 76 31332008
2018 Phylogenetic Distribution of CMP-Neu5Ac Hydroxylase (CMAH), the Enzyme Synthetizing the Proinflammatory Human Xenoantigen Neu5Gc. Genome biology and evolution 73 29206915
2013 Production of biallelic CMP-Neu5Ac hydroxylase knock-out pigs. Scientific reports 67 23760311
2003 A transgenic insect cell line engineered to produce CMP-sialic acid and sialylated glycoproteins. Glycobiology 66 12626399
2001 Expression of sialyl-Tn antigen in breast cancer cells transfected with the human CMP-Neu5Ac: GalNAc alpha2,6-sialyltransferase (ST6GalNac I) cDNA. Glycoconjugate journal 64 12820722
1994 Effects of caseinomacropeptide (CMP) on digestion regulation. Reproduction, nutrition, development 63 7840870
1997 Functional expression of the murine Golgi CMP-sialic acid transporter in saccharomyces cerevisiae. The Journal of biological chemistry 62 9139716
2007 Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition. Glycobiology 59 17962295
2002 Evolution of the C30 carotenoid synthase CrtM for function in a C40 pathway. Journal of bacteriology 58 12426357
1999 Enhancement of cell adhesion and spreading by a cartilage-specific noncollagenous protein, cartilage matrix protein (CMP/Matrilin-1), via integrin alpha1beta1. The Journal of biological chemistry 58 10196235
2015 Utilizing CMP-Sialic Acid Analogs to Unravel Neisseria gonorrhoeae Lipooligosaccharide-Mediated Complement Resistance and Design Novel Therapeutics. PLoS pathogens 56 26630657
1999 Expression cloning of mouse cDNA of CMP-NeuAc:Lactosylceramide alpha2,3-sialyltransferase, an enzyme that initiates the synthesis of gangliosides. The Journal of biological chemistry 56 10092602
2001 Substrate recognition by UDP-galactose and CMP-sialic acid transporters. Different sets of transmembrane helices are utilized for the specific recognition of UDP-galactose and CMP-sialic acid. The Journal of biological chemistry 55 11279205
1996 CMP kinase from Escherichia coli is structurally related to other nucleoside monophosphate kinases. The Journal of biological chemistry 55 8576266
1998 CMP-N-Acetylneuraminic acid hydroxylase is exclusively inactive in humans. Biochemical and biophysical research communications 54 9675135
1989 Detection of CMP-N-acetylneuraminic acid hydroxylase activity in fractionated mouse liver. The Biochemical journal 52 2556992
2020 Carvacrol Targets SarA and CrtM of Methicillin-Resistant Staphylococcus aureus to Mitigate Biofilm Formation and Staphyloxanthin Synthesis: An In Vitro and In Vivo Approach. ACS omega 51 33324819
2017 Cell-Surface Glyco-Engineering by Exogenous Enzymatic Transfer Using a Bifunctional CMP-Neu5Ac Derivative. Journal of the American Chemical Society 51 28858492
2004 CMP-sialic acid synthetase of the nucleus. Biochimica et biophysica acta 51 15238249
1998 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure (London, England : 1993) 51 9862805
2011 Lack of association between adolescent idiopathic scoliosis and previously reported single nucleotide polymorphisms in MATN1, MTNR1B, TPH1, and IGF1 in a Japanese population. Journal of orthopaedic research : official publication of the Orthopaedic Research Society 49 21308753
2008 Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila. Biochemistry 48 18275154
2013 Intellectual disability and bleeding diathesis due to deficient CMP--sialic acid transport. Neurology 47 23873973
2010 Cloning and functional characterization of pig CMP-N-acetylneuraminic acid hydroxylase for the synthesis of N-glycolylneuraminic acid as the xenoantigenic determinant in pig-human xenotransplantation. The Biochemical journal 47 20047559
2004 Structure and function of vertebrate CMP-sialic acid synthetases. Glycobiology 47 15201214
2001 Cloning and expression of human sialic acid pathway genes to generate CMP-sialic acids in insect cells. Glycoconjugate journal 47 11602804
2006 Evidence of a linkage between matrilin-1 gene (MATN1) and idiopathic scoliosis. Scoliosis 44 17176459
1989 Effects of inducers of differentiation on protein kinase C and CMP-N-acetylneuraminic acid:lactosylceramide sialyltransferase activities of HL-60 leukemia cells. Journal of lipid research 44 2715723
2004 Substrate-induced conformational changes in human UMP/CMP kinase. The Journal of biological chemistry 43 15163660
1993 Synthesis of CMP-deaminoneuraminic acid (CMP-KDN) using the CTP:CMP-3-deoxynonulosonate cytidylyltransferase from rainbow trout testis. Identification and characterization of a CMP-KDN synthetase. The Journal of biological chemistry 43 8381411
1994 Molecular cloning and analysis of genes for sialic acid synthesis in Neisseria meningitidis group B and purification of the meningococcal CMP-NeuNAc synthetase enzyme. Journal of bacteriology 42 8045888
2007 Identification and characterization of CMP-NeuAc:GalNAc-IgA1 alpha2,6-sialyltransferase in IgA1-producing cells. Journal of molecular biology 41 17418236
2003 The crystal structure of murine CMP-5-N-acetylneuraminic acid synthetase. Journal of molecular biology 41 14636592
1994 Reaction mechanism underlying CMP-N-acetylneuraminic acid hydroxylation in mouse liver: formation of a ternary complex of cytochrome b5, CMP-N-acetylneuraminic acid, and a hydroxylation enzyme. Journal of biochemistry 40 8056746
2003 Reaction of human UMP-CMP kinase with natural and analog substrates. European journal of biochemistry 39 12694191
1997 Investigation of the association of the CRTM and CRTL1 genes with radiographically evident osteoarthritis in subjects from the Rotterdam study. Arthritis and rheumatism 39 9336408
1996 Characterization of cpsF and its product CMP-N-acetylneuraminic acid synthetase, a group B streptococcal enzyme that can function in K1 capsular polysaccharide biosynthesis in Escherichia coli. Molecular microbiology 38 8830246
1990 cDNA-derived sequence of UMP-CMP kinase from Dictyostelium discoideum and expression of the enzyme in Escherichia coli. The Journal of biological chemistry 38 2156849
2008 Bacterial CMP-sialic acid synthetases: production, properties, and applications. Applied microbiology and biotechnology 37 18716769
2006 Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation. The Journal of biological chemistry 37 17046821
2019 MATN1-AS1 promotes glioma progression by functioning as ceRNA of miR-200b/c/429 to regulate CHD1 expression. Cell proliferation 36 31667976
2019 LncRNA MATN1-AS1 prevents glioblastoma cell from proliferation and invasion via RELA regulation and MAPK signaling pathway. Annals of translational medicine 35 32042800
2021 Direct and indirect immune effects of CMP-001, a virus-like particle containing a TLR9 agonist. Journal for immunotherapy of cancer 33 34083419
2007 Expression of the human CMP-NeuAc:GM3 alpha2,8-sialyltransferase (GD3 synthase) gene through the NF-kappaB activation in human melanoma SK-MEL-2 cells. Biochimica et biophysica acta 33 17913261
2009 Structure-based mechanism of CMP-2-keto-3-deoxymanno-octulonic acid synthetase: convergent evolution of a sugar-activating enzyme with DNA/RNA polymerases. The Journal of biological chemistry 32 19815542
2011 Pasteurella multocida CMP-sialic acid synthetase and mutants of Neisseria meningitidis CMP-sialic acid synthetase with improved substrate promiscuity. Applied microbiology and biotechnology 30 21968653
2007 CMP substitutions preferentially inhibit polysialic acid synthesis. Glycobiology 30 18077550
2022 Hesperidin inhibits biofilm formation, virulence and staphyloxanthin synthesis in methicillin resistant Staphylococcus aureus by targeting SarA and CrtM: an in vitro and in silico approach. World journal of microbiology & biotechnology 29 35064842
2006 Expression of a functional Drosophila melanogaster CMP-sialic acid synthetase. Differential localization of the Drosophila and human enzymes. The Journal of biological chemistry 29 16537535
2005 Expression of human CMP-N-acetylneuraminic acid synthetase and CMP-sialic acid transporter in tobacco suspension-cultured cell. Biochemical and biophysical research communications 29 16343442
1982 Differential effects of various phosphodiesterase inhibitors, pyrimidine and purine compounds, and inorganic phosphates on cyclic CMP, cyclic AMP and cyclic GMP phosphodiesterases. Biochemical pharmacology 29 6277336
2015 CMP-Sialic Acid Synthetase: The Point of Constriction in the Sialylation Pathway. Topics in current chemistry 28 24141690
2012 N and C control of ABC-type bicarbonate transporter Cmp and its LysR-type transcriptional regulator CmpR in a heterocyst-forming cyanobacterium, Anabaena sp. Environmental microbiology 28 22221957
2002 Sugar specificity of bacterial CMP kinases as revealed by crystal structures and mutagenesis of Escherichia coli enzyme. Journal of molecular biology 27 11827479
2001 The structure of CMP:2-keto-3-deoxy-manno-octonic acid synthetase and of its complexes with substrates and substrate analogs. Journal of molecular biology 27 11545592
1989 Transport of CMP-N-glycoloylneuraminic acid into mouse liver Golgi vesicles. FEBS letters 27 2753135
1982 CMP-dependent incorporation of [14C]Glycerol 3-phosphate into phosphatidylglycerol and phosphatidylglycerol phosphate by rabbit lung microsomes. Biochimica et biophysica acta 27 7074121
1999 Expression and activity of chimeric molecules between human UDP-galactose transporter and CMP-sialic acid transporter. Journal of biochemistry 26 10544289
1982 A homogeneous cyclic CMP phosphodiesterase hydrolyzes both pyrimidine and purine cyclic 2':3'- and 3':5'-nucleotides. The Journal of biological chemistry 26 6274851
2020 Intraperitoneal CMP-001: A Novel Immunotherapy for Treating Peritoneal Carcinomatosis of Gastrointestinal and Pancreaticobiliary Cancer. Annals of surgical oncology 25 32409965
2015 A Designed Angiopoietin-1 Variant, Dimeric CMP-Ang1 Activates Tie2 and Stimulates Angiogenesis and Vascular Stabilization in N-glycan Dependent Manner. Scientific reports 25 26478188
2010 Human CMP-N-acetylneuraminic acid hydroxylase is a novel stem cell marker linked to stem cell-specific mechanisms. Stem cells (Dayton, Ohio) 25 19890979
2004 Phosphorylation of Cytidine, Deoxycytidine, and Their Analog Monophosphates by Human UMP/CMP Kinase Is Differentially Regulated by ATP and Magnesium. Molecular pharmacology 25 15550676
1995 Isolation from recombinant Escherichia coli and characterization of CMP-Kdo synthetase, involved in the expression of the capsular K5 polysaccharide (K-CKS). FEMS microbiology letters 25 7875563
2012 Binding of regulatory subunits of cyclic AMP-dependent protein kinase to cyclic CMP agarose. PloS one 24 22808067
2011 Pancreatic beta-cell failure in obese mice with human-like CMP-Neu5Ac hydroxylase deficiency. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 24 21350118
1991 CMP-N-acetylneuraminic acid synthetase of Escherichia coli: high level expression, purification and use in the enzymatic synthesis of CMP-N-acetylneuraminic acid and CMP-neuraminic acid derivatives. Glycobiology 24 1823161
1989 In vitro synthesis of colominic acid by membrane-bound sialyltransferase of Escherichia coli K-235. Kinetic properties of this enzyme and inhibition by CMP and other cytidine nucleotides. European journal of biochemistry 24 2643517
2014 A CMP-based method for tunable, cell-mediated gene delivery from collagen scaffolds. Journal of materials chemistry. B 23 32262095
2005 Molecular typing of Campylobacter strains using the cmp gene encoding the major outer membrane protein. Foodborne pathogens and disease 23 15992295
1992 Sequence and functional analysis of the cloned Neisseria meningitidis CMP-NeuNAc synthetase. FEMS microbiology letters 23 1398032
2019 Lessening of porcine epidemic diarrhoea virus susceptibility in piglets after editing of the CMP-N-glycolylneuraminic acid hydroxylase gene with CRISPR/Cas9 to nullify N-glycolylneuraminic acid expression. PloS one 21 31141512
2014 Pen and Pal are nucleotide-sugar dehydratases that convert UDP-GlcNAc to UDP-6-deoxy-D-GlcNAc-5,6-ene and then to UDP-4-keto-6-deoxy-L-AltNAc for CMP-pseudaminic acid synthesis in Bacillus thuringiensis. The Journal of biological chemistry 21 25414257
2005 Functional expression of the CMP-sialic acid transporter in Escherichia coli and its identification as a simple mobile carrier. Glycobiology 20 16118285
2004 IR and Raman study on the interactions of the 5'-GMP and 5'-CMP phosphate groups with Mg(II), Ca(II), Sr(II), Ba(II), Cr(III), Co(II), Cu(II), Zn(II), Cd(II), Al(III) and Ga(III). Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 20 15452776
1998 Cloning, sequence analysis and expression of the basidiomycete Lentinus edodes gene uck1, encoding UMP-CMP kinase, the homologue of Saccharomyces cerevisae URA6 gene. Gene 20 9602145
1997 Structural and catalytic properties of CMP kinase from Bacillus subtilis: a comparative analysis with the homologous enzyme from Escherichia coli. Archives of biochemistry and biophysics 20 9126287
2020 Novel Insights into Selected Disease-Causing Mutations within the SLC35A1 Gene Encoding the CMP-Sialic Acid Transporter. International journal of molecular sciences 19 33396746
2014 Fluorescent mimetics of CMP-Neu5Ac are highly potent, cell-permeable polarization probes of eukaryotic and bacterial sialyltransferases and inhibit cellular sialylation. Angewandte Chemie (International ed. in English) 19 24737687
1991 Complete nucleotide and deduced protein sequence of CMP-NeuAc: poly-alpha-2,8 sialosyl sialyltransferase of Escherichia coli K1. Glycobiology 19 1820197
2020 Unliganded and CMP-Neu5Ac bound structures of human α-2,6-sialyltransferase ST6Gal I at high resolution. Journal of structural biology 18 32971290
2019 N-Glycolylneuraminic Acid (Neu5Gc) Null Large Animals by Targeting the CMP-Neu5Gc Hydroxylase (CMAH). Frontiers in immunology 18 31681287

Missed literature

Know a paper Affinage missed for MATN1? Flag it for the maintainers and the community.

No submissions yet.