Affinage

KIR2DS2

Killer cell immunoglobulin-like receptor 2DS2 · UniProt P43631

Length
304 aa
Mass
33.5 kDa
Annotated
2026-06-10
28 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KIR2DS2 is an activating NK cell receptor that couples antigen recognition at the cell surface to NK cell cytotoxicity, signaling through the charged lysine in its transmembrane domain that recruits the DAP12 adaptor; a natural mutant disrupting this lysine loses DAP12 association and fails to trigger activation (PMID:11169398). Despite 99% extracellular identity with the inhibitory receptor KIR2DL2, KIR2DS2 does not bind HLA-Cw3, a divergence traced structurally to displacements at Tyr45 and Gln71 and interpreted as evolutionary selection for loss of C1 epitope recognition by the activating receptor (PMID:12668644, PMID:23189078). The complex structure with HLA-C*0102 shows that Tyr45 (versus Phe45 in inhibitory KIRs) dictates a distinct binding mode and that a conserved peptide 'AT' motif governs peptide-specific recognition (PMID:34967442). Functionally, KIR2DS2 directly recognizes conserved flaviviral superfamily 2 RNA helicase peptides (an 'MCHAT' motif) and an HCV helicase peptide presented by HLA-C*0102, activating NK cells and being sufficient to inhibit HCV and dengue virus replication (PMID:28916719), and it additionally recognizes a β2-microglobulin-independent ligand on cancer cells distinct from classical HLA-C ligands (PMID:28202613). KIR2DS2-mediated activation is integrated with co-expressed receptors: KIR2DL2 inhibition overrides it while KIR2DL1 is additive (PMID:24078689), and KIR2DS2+ NK cells display enhanced cytotoxicity against tumors, co-mediated by NKG2D and associated with elevated CD16 and ADCC (PMID:25381437, PMID:35768150).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2000 High

    Established how KIR2DS2 converts ligand engagement into an activating signal, resolving why an inhibitory-like ectodomain produces stimulatory output.

    Evidence Sequence analysis of a natural transmembrane mutant, DAP12 co-transfection association, and NK cytotoxicity assays

    PMID:11169398

    Open questions at the time
    • Downstream DAP12 signaling intermediates not mapped in this study
    • Did not define the physiological ligand driving activation
  2. 2003 High

    Explained at atomic resolution why activating KIR2DS2 fails to bind HLA-Cw3 despite near-identical ectodomain to inhibitory KIR2DL2, localizing the difference to two residues.

    Evidence 2.3-Å X-ray crystal structure plus KIR tetramer binding assays

    PMID:12668644

    Open questions at the time
    • Did not identify a positive ligand for KIR2DS2
    • Functional consequence of altered binding for NK activation not tested here
  3. 2012 Medium

    Framed the loss of HLA-C binding as an evolutionary selection event rather than a degenerate accident, positioning KIR2DS2 as deliberately diverged from its inhibitory counterpart.

    Evidence Comparative genetics and evolutionary analysis with referenced tetramer binding data (review synthesis)

    PMID:23189078

    Open questions at the time
    • Inference rests on referenced prior structural/binding data
    • Does not establish the selective pressure or true activating ligand
  4. 2013 Medium

    Defined how KIR2DS2 activation is integrated with co-expressed inhibitory and activating KIRs on the same NK cell, addressing the net functional output.

    Evidence NK clone functional assays against HLA-typed targets and KIR genotype–phenotype analysis in 159 donors

    PMID:24078689

    Open questions at the time
    • Molecular basis of inhibitory dominance not resolved
    • C1-reactivity readout did not identify the activating ligand at the molecular level
  5. 2017 High

    Identified a physiological activating ligand—conserved flaviviral helicase peptides presented by HLA-C*0102—and linked KIR2DS2 recognition to antiviral control.

    Evidence Peptide-HLA binding, NK activation, endogenous presentation, and HCV/dengue replication inhibition assays

    PMID:28916719

    Open questions at the time
    • In vivo relevance during human infection not established
    • Affinity and structural basis of peptide recognition addressed only later
  6. 2017 High

    Revealed a second, β2-microglobulin-independent ligand on cancer cells, distinguishing tumor recognition from classical HLA-C peptide presentation.

    Evidence KIR2DS2 reporter assays, β2-microglobulin siRNA knockdown, anti-class I antibody blocking, and trogocytosis analysis

    PMID:28202613

    Open questions at the time
    • Molecular identity of the non-classical ligand not determined
    • Binding affinity and structural basis of this interaction unknown
  7. 2022 High

    Provided the structural rationale for KIR2DS2 peptide-specific recognition of HLA-C*0102, pinpointing Tyr45 and a peptide 'AT' motif as determinants of binding mode and specificity.

    Evidence 2.5-Å X-ray crystal structure of the KIR2DS2–HLA-C*0102 complex

    PMID:34967442

    Open questions at the time
    • Functional impact of the two binding orientations on signaling not tested
    • Does not address the non-HLA cancer ligand
  8. 2014 Medium

    Showed KIR2DS2 marks functionally activated NK cells with enhanced antitumor cytotoxicity that is co-dependent on NKG2D ligands.

    Evidence FACS-sorted KIR2DS2+ NK subsets, in vitro cytotoxicity, NKG2D antibody blockade, and in vivo GBM xenografts

    PMID:25381437

    Open questions at the time
    • Cannot separate direct KIR2DS2 signaling from NKG2D contribution
    • Whether KIR2DS2 itself engaged a GBM ligand not defined
  9. 2022 Medium

    Extended the antitumor phenotype across multiple malignancies and tied KIR2DS2 expression to elevated CD16 and antibody-dependent cytotoxicity transcriptional programs.

    Evidence Flow cytometry, bulk and single-cell RNA-seq, and NK activation assays with tumor targets and therapeutic antibodies

    PMID:35768150

    Open questions at the time
    • Causal mechanism linking KIR2DS2 to CD16/FCGR upregulation not established
    • Correlative association between KIR2DS2 expression and cytotoxic state
  10. 2012 Low

    Linked KIR2DS2 surface expression to epigenetic control via promoter CpG methylation, addressing how its variegated expression is regulated.

    Evidence Bisulfite sequencing of a promoter CpG island and mRNA qPCR (n=20)

    PMID:22939905

    Open questions at the time
    • Correlational, not causal; no methylation manipulation to demonstrate control
    • Small sample size
    • Mechanism connecting demethylation to transcription not defined
  11. 2011 Medium

    Characterized a recombinant KIR2DS2*005 fusion allele, defining allelic diversity at the locus and its effect on receptor architecture.

    Evidence cDNA sequencing, recombination mapping, population genetics, and dual-antibody surface expression analysis

    PMID:21593779

    Open questions at the time
    • Functional signaling consequence of the swapped transmembrane/cytoplasmic regions not tested
    • Ligand recognition by the fusion protein not assessed

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular identity of the β2-microglobulin-independent cancer ligand and the in vivo contribution of KIR2DS2 to antiviral and antitumor immunity remain unresolved.
  • Non-classical cancer ligand not biochemically identified
  • Causal mechanism linking KIR2DS2 to CD16/ADCC programs unknown
  • In vivo human relevance of helicase-peptide recognition untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 3 GO:0060090 molecular adaptor activity 1
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-168256 Immune System 3
Partners

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 Crystal structure of KIR2DS2 at 2.3-Å resolution revealed that despite 99% extracellular amino acid identity with inhibitory KIR2DL2, activating KIR2DS2 does not bind HLA-Cw3; subtle displacements of two residues (Tyr45 and Gln71) account for the loss of HLA-C recognition compared to KIR2DL2. X-ray crystallography (2.3 Å structure) combined with KIR tetramer binding assays The Journal of experimental medicine High 12668644
2000 KIR2DS2 transduces activating signals through association with the DAP12 adaptor polypeptide via a charged lysine residue in its transmembrane domain; a naturally occurring mutant with six non-conservative mutations in the transmembrane exon, including disruption of this lysine, showed sharply reduced DAP12 association and failed to trigger NK cell activation. Sequence analysis of natural mutant cDNA, co-transfection experiments assessing DAP12 association, functional NK cytotoxicity assays European journal of immunology High 11169398
2017 KIR2DS2 directly recognizes viral peptides derived from conserved flaviviral superfamily 2 RNA helicase motif 1b region (including an 'MCHAT' motif present in 61 of 63 flaviviruses) presented by HLA-C*0102, leading to NK cell activation; an HCV helicase peptide (LNPSVAATL) also binds HLA-C*0102 and activates NK cells via KIR2DS2. KIR2DS2 was sufficient to inhibit HCV and dengue virus replication in the context of HLA-C*0102. Peptide-HLA binding assays, NK cell activation assays, endogenous antigen presentation, viral replication inhibition assays Science immunology High 28916719
2017 KIR2DS2 recognizes a β2-microglobulin-independent ligand expressed on cancer cell lines, distinct from classical HLA-C1 or C2 group ligands; siRNA knockdown of β2-microglobulin reducing class I H chain expression by >97% did not reduce KIR2DS2 reporter responses, and anti-HLA class I antibodies did not block KIR2DS2 recognition of cancer cells. Trogocytosis indicated formation of KIR2DS2 ligand-specific immunological synapses. KIR2DS2 reporter cell assays, siRNA knockdown of β2-microglobulin, antibody blocking assays, trogocytosis analysis Journal of immunology (Baltimore, Md. : 1950) High 28202613
2022 Crystal structure of KIR2DS2 in complex with HLA-C*0102 at 2.5-Å resolution revealed that KIR2DS2 can bind HLA-C*0102 and HLA-A*1101 in two different orientations; Tyr45 in KIR2DS2 (vs. Phe45 in inhibitory KIRs) distinguishes the binding mode and affinity between activating and inhibitory KIRs; a conserved 'AT' motif in the peptide mediates recognition and determines peptide specificity. X-ray crystallography (2.5 Å complex structure) Immunology High 34967442
2013 KIR2DS2+ KIR2DL2- NK cell clones were C1-reactive (activated by C1 HLA-C alleles) irrespective of HLA-C environment; however, when KIR2DS2 and KIR2DL2 are co-expressed on the same NK cell, KIR2DL2-mediated inhibition overrides KIR2DS2-mediated activation. In contrast, KIR2DS2 and KIR2DL1 had an additive enhancing effect on NK responses against C1C1 targets. NK cell clone functional assays (co-culture with HLA-typed target cells), KIR genotype–phenotype analysis in 159 donors Journal of immunology (Baltimore, Md. : 1950) Medium 24078689
2012 KIR2DS2, despite 99% extracellular identity with inhibitory KIR2DL2, was selected for lost recognition of HLA-C; the activating receptor was specifically selected to NOT bind the C1 epitope of HLA-C that its inhibitory counterpart KIR2DL2/3 recognizes. Comparative genetics, KIR tetramer binding (referenced from structural study), evolutionary analysis Frontiers in immunology Medium 23189078
2004 Simultaneous engagement of KIR2DL3 and KIR2DS2 on the same NK cell clone was investigated using redirected killing assays with the combination of GL183 and novel ECM41 (KIR2DL3-specific) monoclonal antibodies, allowing dissection of their opposing inhibitory vs. activating functions on NK cells co-expressing both receptors. Generation of KIR2DL3-specific monoclonal antibody (ECM41), redirected killing assays with mAb combinations, NK clone surface expression analysis International immunology Medium 15314042
2011 KIR2DS2*005 is a fusion gene resulting from unequal crossing-over between KIR2DS2 and KIR2DS3 within a 400 bp region of identity in intron 6; the encoded protein retains the KIR2DS2 ectodomain but has KIR2DS3 transmembrane and cytoplasmic regions. KIR2DS2*005 is expressed on the surface of NK and T lymphocytes, confirmed with two monoclonal antibodies. cDNA sequencing, recombination mapping, population genetics, dual monoclonal antibody surface expression analysis Genes and immunity Medium 21593779
2012 KIR2DS2 promoter contains a CpG island spanning from -160 to +26 with six cytosine sites; promoter hypomethylation at this CpG island is associated with increased KIR2DS2 mRNA expression, and frequency of unmethylated sites increased after hematopoietic cell transplantation, suggesting epigenetic regulation of KIR2DS2 expression. Sodium bisulfite treatment of genomic DNA, sequencing for CpG methylation, mRNA quantitative PCR Human immunology Low 22939905
2014 KIR2DS2+ NK cell subpopulations showed enhanced cytotoxicity against glioblastoma (GBM) cells, retaining high CD69 and CD16 expression and producing more CD107a and granzyme A upon GBM contact; NK cell-mediated GBM killing depended on NKG2D ligand expression on GBM cells and was partially abrogated by NKG2D antibody blockade, indicating KIR2DS2 marks functionally activated NK cells whose killing is co-mediated by NKG2D. FACS sorting of KIR2DS2+ NK cell subpopulations, cytotoxicity assays in vitro, antibody blocking of NKG2D, in vivo GBM xenograft in NOD/SCID mice Journal of immunology (Baltimore, Md. : 1950) Medium 25381437
2022 KIR2DS2high NK cells show enhanced spontaneous cytotoxic activation against malignant B cell lines, liver cancer cell lines, and primary CLL cells; KIR2DS2high NK cells have increased surface CD16 expression and enhanced ADCC in response to rituximab and obinutuzumab. Bulk RNA sequencing and single-cell RNA sequencing of KIR2DS2+ NK cells confirmed upregulation of NK-mediated cytotoxicity, translation, and FCGR gene pathways. Flow cytometry, bulk RNA sequencing, single-cell RNA sequencing, NK cell activation assays with tumor targets and therapeutic antibodies Journal of immunology (Baltimore, Md. : 1950) Medium 35768150

Source papers

Stage 0 corpus · 28 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Diverse functionality among human NK cell receptors for the C1 epitope of HLA-C: KIR2DS2, KIR2DL2, and KIR2DL3. Frontiers in immunology 93 23189078
2013 Large spectrum of HLA-C recognition by killer Ig-like receptor (KIR)2DL2 and KIR2DL3 and restricted C1 SPECIFICITY of KIR2DS2: dominant impact of KIR2DL2/KIR2DS2 on KIR2D NK cell repertoire formation. Journal of immunology (Baltimore, Md. : 1950) 85 24078689
2017 KIR2DS2 recognizes conserved peptides derived from viral helicases in the context of HLA-C. Science immunology 82 28916719
2003 Crystal structure of the human natural killer cell activating receptor KIR2DS2 (CD158j). The Journal of experimental medicine 71 12668644
2014 NK cells with KIR2DS2 immunogenotype have a functional activation advantage to efficiently kill glioblastoma and prolong animal survival. Journal of immunology (Baltimore, Md. : 1950) 53 25381437
2009 Killer immunoglobulin-like receptors (KIR2DL2 and/or KIR2DS2) in presence of their ligand (HLA-C1 group) protect against chronic myeloid leukaemia. Tissue antigens 51 19493232
1990 Characteristics of binding of Escherichia coli serotype O157:H7 strain CL-49 to purified intestinal mucin. Infection and immunity 49 1969394
1990 Role of the putative "link" glycopeptide of intestinal mucin in binding of piliated Escherichia coli serotype O157:H7 strain CL-49. Infection and immunity 41 1969395
2007 Influence of KIR gene diversity on the course of HSV-1 infection: resistance to the disease is associated with the absence of KIR2DL2 and KIR2DS2. Tissue antigens 37 17559579
2017 The Activating Human NK Cell Receptor KIR2DS2 Recognizes a β2-Microglobulin-Independent Ligand on Cancer Cells. Journal of immunology (Baltimore, Md. : 1950) 31 28202613
2019 KIR2DS2/KIR2DL2/HLA-C1 Haplotype Is Associated with Alzheimer's Disease: Implication for the Role of Herpesvirus Infections. Journal of Alzheimer's disease : JAD 30 30689576
2011 Expression of activating KIR2DS2 and KIR2DS4 genes after hematopoietic cell transplantation: relevance to cytomegalovirus infection. Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation 30 21596150
2019 Killer Immunoglobulin-Like Receptor 2DS2 (KIR2DS2), KIR2DL2-HLA-C1, and KIR2DL3 as Genetic Markers for Stratifying the Risk of Cytomegalovirus Infection in Kidney Transplant Recipients. International journal of molecular sciences 20 30696053
2012 The KIR2DS2/DL2 genotype is associated with adult persistent/chronic and relapsed immune thrombocytopenia independently of FCGR3a-158 polymorphisms. Blood coagulation & fibrinolysis : an international journal in haemostasis and thrombosis 17 22024796
2009 Lack of killer immunoglobulin-like receptor 2DS2 (KIR2DS2) and KIR2DL2 is associated with poor responses to therapy of recurrent hepatitis C virus in liver transplant recipients. Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 17 19877200
2016 KIR2DL2 and KIR2DS2 as genetic markers to the methotrexate response in rheumatoid arthritis patients. Immunopharmacology and immunotoxicology 15 27251940
2011 Molecular characterisation of KIR2DS2*005, a fusion gene associated with a shortened KIR haplotype. Genes and immunity 13 21593779
2004 Isolation of a novel KIR2DL3-specific mAb: comparative analysis of the surface distribution and function of KIR2DL2, KIR2DL3 and KIR2DS2. International immunology 13 15314042
2015 Increased frequencies of the killer immunoglobulin-like receptor genes KIR2DL2 and KIR2DS2 are associated with neuroblastoma. Tissue antigens 12 26202659
2000 Identification and molecular characterization of a natural mutant of the p50.2/KIR2DS2 activating NK receptor that fails to mediate NK cell triggering. European journal of immunology 12 11169398
2022 KIR2DS2 Expression Identifies NK Cells With Enhanced Anticancer Activity. Journal of immunology (Baltimore, Md. : 1950) 11 35768150
2022 Activating receptor KIR2DS2 bound to HLA-C1 reveals the novel recognition features of activating receptor. Immunology 10 34967442
2019 A novel antibody combination to identify KIR2DS2high natural killer cells in KIR2DL3/L2/S2 heterozygous donors. HLA 7 30381896
2016 KIR2DS2 as predictor of thrombocytopenia secondary to pegylated interferon-alpha therapy. The pharmacogenomics journal 4 26975229
2010 Expression of KIR2DL3 and KIR2DS2 natural killer receptors in exercise. Bulletin of experimental biology and medicine 2 21165439
2012 KIR2DS2 and KIR2DS4 promoter hypomethylation patterns in patients undergoing hematopoietic cell transplantation (HCT). Human immunology 1 22939905
2024 KIR2DS2+ NK cells in cancer patients demonstrate high activation in response to tumour-targeting antibodies. Frontiers in oncology 0 39286025
2021 Characterization of the novel KIR2DS2*022 allele identified in a northern Chinese Han individual. HLA 0 34155832

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