Affinage

ITFG1

T-cell immunomodulatory protein · UniProt Q8TB96

Length
612 aa
Mass
68.1 kDa
Annotated
2026-06-10
11 papers in source corpus 4 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ITFG1 (LINKIN/LNKN-1) is a conserved transmembrane protein that couples cell–cell adhesion to microtubule dynamics during collective cell migration (PMID:25437307). Its extracellular region contains seven atypical FG-GAP domains predicted to fold into a β-propeller resembling the α-integrin ligand-binding domain, and it localizes to the plasma membrane to promote adhesion between neighboring cells (PMID:25437307). Through its intracellular domain it engages the AAA-ATPases RUVBL1 and RUVBL2 together with α-tubulin, linking adhesion to microtubule regulation (PMID:25437307, PMID:28341484). In breast cancer cells the RUVBL1–ITFG1 complex resides in the cytoplasm and at the plasma membrane and is required for collective invasion, as silencing either partner compromises invasion in vitro and in vivo (PMID:28341484). Additional interactors implicating membrane remodeling and chromosome biology in LINKIN-dependent tissue integrity have been identified (PMID:36798316), but beyond these interaction and adhesion-migration roles no further enzymatic or structural mechanism has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2014 High

    Established ITFG1/LINKIN as a transmembrane adhesion molecule whose extracellular FG-GAP domains mediate cell–cell adhesion while its intracellular domain controls microtubule dynamics, defining a single protein that bridges adhesion and the cytoskeleton.

    Evidence SILAC IP-MS interactome in HEK293T cells, C. elegans genetic loss-of-function, immunofluorescence localization, and domain analysis

    PMID:25437307

    Open questions at the time
    • β-propeller fold of the FG-GAP region is predicted, not structurally resolved
    • the adhesion ligand/binding partner on neighboring cells is not identified
    • no enzymatic activity assigned to ITFG1 itself
  2. 2014 High

    Identified the intracellular binding partners (RUVBL1, RUVBL2, α-tubulin) that mechanistically connect ITFG1 to microtubule regulation, answering how a surface adhesion protein influences the cytoskeleton.

    Evidence SILAC co-IP-MS in HEK293T cells with C. elegans male gonad functional validation

    PMID:25437307 PMID:28341484

    Open questions at the time
    • the binding interface/domain on the ITFG1 cytoplasmic tail is not mapped
    • whether ITFG1 modulates RUVBL ATPase activity is unknown
    • stoichiometry of the ITFG1–RUVBL–tubulin assembly is undefined
  3. 2017 High

    Showed the RUVBL1–ITFG1 interaction is functionally required for collective cancer cell invasion, extending the adhesion/microtubule role into a disease-relevant migratory program.

    Evidence Reciprocal Co-IP, immunofluorescence co-localization, siRNA knockdown, transwell and microfluidic invasion assays, xenograft and tail-vein mouse models in breast cancer cells

    PMID:28341484

    Open questions at the time
    • downstream effectors translating the complex into invasive behavior are not defined
    • single-lab finding
    • the contribution of the extracellular adhesion function versus intracellular RUVBL binding to invasion is not separated
  4. 2023 Medium

    Broadened the LINKIN interactome to ATP9A, NME1, and ANAPC2, implicating membrane remodeling and chromosome biology in ITFG1-dependent adhesion through cross-species phenotype concordance.

    Evidence IP-MS in MDA-MB-231 cells, epitope-tag surface localization, and C. elegans loss-of-function of orthologs tat-5, ndk-1, apc-2 (preprint)

    PMID:36798316

    Open questions at the time
    • preprint, not yet peer-reviewed
    • direct physical versus indirect association of the new interactors not resolved
    • mechanistic link between membrane remodeling/chromosome biology and adhesion not established
  5. 2012 Medium

    Mapped a translocation breakpoint within ITFG1 that silences a neighboring gene by position effect, characterizing the genomic context rather than ITFG1 protein function.

    Evidence FISH breakpoint mapping, real-time PCR expression analysis, chromatin immunoprecipitation, and pyrosequencing

    PMID:22475481

    Open questions at the time
    • phenotype attributed to position effect on NETO2/BTCL2, not to ITFG1 protein loss
    • no direct test of ITFG1 protein function
    • does not establish an ITFG1-intrinsic disease mechanism

Open questions

Synthesis pass · forward-looking unresolved questions
  • How ITFG1 transduces extracellular adhesion signals across the membrane to regulate RUVBL/tubulin-dependent microtubule dynamics, and what its true extracellular ligand is, remain unresolved.
  • no structure of the FG-GAP β-propeller or the cytoplasmic interaction interface
  • extracellular adhesion ligand unidentified
  • no biochemical reconstitution of the ITFG1–RUVBL–tubulin assembly

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 2 GO:0098631 cell adhesion mediator activity 1
Localization
GO:0005886 plasma membrane 3 GO:0005829 cytosol 1
Pathway
R-HSA-1474244 Extracellular matrix organization 1 R-HSA-1643685 Disease 1

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 LINKIN (ITFG1/LNKN-1) is a conserved transmembrane protein with seven atypical FG-GAP domains in its extracellular domain that potentially fold into a β-propeller structure resembling the α-integrin ligand-binding domain. It localizes to the plasma membrane with apical and lateral bias in C. elegans gonadal cells and promotes adhesion between neighboring cells through its extracellular domain while regulating microtubule dynamics through RUVBL proteins at its intracellular domain. SILAC mass spectrometry interactome (human HEK293T cells), C. elegans genetic loss-of-function, immunofluorescence localization, domain analysis eLife High 25437307
2014 ITFG1/LNKN-1 interacts with RUVBL1, RUVBL2, and α-tubulin as identified by immunoprecipitation-mass spectrometry in human HEK293T cells, and these interactions were functionally validated in C. elegans male gonad development. SILAC mass spectrometry co-immunoprecipitation (human HEK293T cells), C. elegans functional validation eLife High 25437307 28341484
2017 RUVBL1 interacts with ITFG1 in the cytoplasm and at the plasma membrane of breast cancer cells, and this interaction is required for collective invasion; silencing either RUVBL1 or ITFG1 individually compromises collective invasion in vitro (transwell and microfluidic assays) and in vivo (xenograft and tail vein injection models). Co-immunoprecipitation, immunofluorescence co-localization, siRNA knockdown, transwell invasion assay, microfluidic invasion assay, xenograft mouse model Biochimica et biophysica acta. General subjects High 28341484
2023 Epitope-tagged ITFG1 localizes to the cell surface of MDA-MB-231 breast cancer cells. IP-MS identified new ITFG1 interactors including ATP9A, NME1, and ANAPC2; loss-of-function of their C. elegans orthologs (tat-5, ndk-1, apc-2) produced migratory detachment phenotypes similar to lnkn-1 loss, implicating membrane remodeling and chromosome biology in LINKIN-dependent cell adhesion. IP-MS (MDA-MB-231 cells), epitope-tag surface localization, C. elegans loss-of-function genetic analysis bioRxivpreprint Medium 36798316
2012 The ITFG1 gene resides in the 16q12.1 euchromatic band, and a chromosomal translocation breakpoint maps within ITFG1, causing position-effect silencing of a neighboring gene (NETO2/BTCL2), associated with a severe neurological phenotype; the breakpoint disruption of ITFG1's chromosomal context was established by FISH. FISH breakpoint mapping, real-time PCR expression analysis, chromatin immunoprecipitation, pyrosequencing Molecular cytogenetics Medium 22475481

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Toward the development of transcriptional biodosimetry for the identification of irradiated individuals and assessment of absorbed radiation dose. Radiation and environmental biophysics 39 25972268
2021 Multiomics Identification of Potential Targets for Alzheimer Disease and Antrocin as a Therapeutic Candidate. Pharmaceutics 26 34683848
2021 Potential application of genomic profiling for the diagnosis and treatment of patients with sarcoma. Oncology letters 22 33747210
2012 Juxtaposition of heterochromatic and euchromatic regions by chromosomal translocation mediates a heterochromatic long-range position effect associated with a severe neurological phenotype. Molecular cytogenetics 22 22475481
2018 Identification of genes associated with survival of breast cancer patients. Breast cancer (Tokyo, Japan) 20 30341748
2017 RUVBL1-ITFG1 interaction is required for collective invasion in breast cancer. Biochimica et biophysica acta. General subjects 20 28341484
2011 Developing point of care and high-throughput biological assays for determining absorbed radiation dose. Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology 20 21724286
2014 LINKIN, a new transmembrane protein necessary for cell adhesion. eLife 13 25437307
2024 PUM1 and PGK1 are Favorable Housekeeping Genes over Established Biodosimetry-related Housekeeping Genes such as HPRT1, ITFG1, DPM1, MRPS5, 18S rRNA and Others after Radiation Exposure. Radiation research 2 38471523
2025 Verification of Preferred Reference Genes for RT-qPCR Analysis of Radiosensitivity Gene in Human Peripheral Blood. Dose-response : a publication of International Hormesis Society 0 41122296
2023 LINKIN-associated proteins necessary for tissue integrity during collective cell migration. bioRxiv : the preprint server for biology 0 36798316

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