Affinage

IPO7

Importin-7 · UniProt O95373

Length
1038 aa
Mass
119.5 kDa
Annotated
2026-06-10
16 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

IPO7 (RanBP7/Imp7) is an importin-β family nuclear transport receptor that recognizes basic import signals on cargo proteins and delivers them across the nuclear pore (PMID:9687515). It was first defined as one of several importin-β-like receptors that directly bind and import ribosomal proteins (rpL23a, rpS7, rpL5), recognizing an archetypal basic import signal (PMID:9687515). Structurally, IPO7 functions with importin-β as a preassembled heterodimer: a short C-terminal nucleoporin-like binding region of IPO7 contacts importin-β through FXFG-type motifs, importin-β allosterically activates IPO7, and only the assembled heterodimer can dock the histone H1 globular domain within IPO7's central cavity for translocation [PMID:bio_10.1101_2025.08.04.668392]. Beyond constitutive cargo, IPO7 serves as the nuclear import step for multiple signaling effectors: it mediates nuclear translocation of the Smad2/3/4 complex in TGF-β-stimulated myofibroblasts (PMID:25968067) and of phospho-p38 under inflammatory (LPS) stimulation, thereby driving NF-κB/p38 MAPK signaling and cytokine production, with IPO7–p-p38 binding inversely related to IPO7–Sirt2 binding (PMID:37769576). In dental papilla cells IPO7 binds odontoblastic transcription factors to import them and promotes HDAC6 nuclear localization, coupling its transport activity to control of odontoblastic versus osteoblastic differentiation through effects on RUNX2 (PMID:35922041). IPO7 is also required for HMGB1 release during inflammatory lung injury, linking it to downstream NET formation and PANoptosis (PMID:38369216), and is exploited by HPV, whose L2 capsid C-terminus directly binds Golgi-associated IPO7 for nuclear entry following COPI-dependent trafficking [PMID:bio_10.1101_2025.01.08.631933]. IPO7 is essential for viability in multiple cell lines (PMID:33664726).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 1998 High

    Established IPO7's foundational activity as a nuclear import receptor by showing it directly binds and imports ribosomal proteins, defining its substrate-recognition mode through a basic import signal.

    Evidence In vitro reconstituted nuclear import assay with direct binding and competition experiments using multiple ribosomal protein substrates

    PMID:9687515

    Open questions at the time
    • Did not resolve the structural basis of cargo recognition
    • Did not address signaling-effector cargoes or heterodimer requirement
  2. 2015 Medium

    Placed IPO7 in TGF-β signaling by identifying it as the import carrier required for Smad2/3/4 nuclear translocation, connecting receptor-level kinase activity to transcriptional output.

    Evidence Subcellular fractionation, MAPK pharmacological inhibition, and protein/mRNA expression analysis in TGF-β1-stimulated myofibroblasts

    PMID:25968067

    Open questions at the time
    • Imp7 and Imp8 contributions not individually distinguished
    • No direct binding between IPO7 and Smad complex demonstrated
  3. 2021 Medium

    Defined IPO7 as an essential gene and a target of viral regulation, showing its dosage is tightly constrained and tuned by EBV miRNAs during infection.

    Evidence CRISPR-Cas9 knockout (lethal) and overexpression growth assays across three cell lines

    PMID:33664726

    Open questions at the time
    • Molecular basis of essentiality (which cargoes) not identified
    • Mechanism by which overexpression inhibits growth unresolved
  4. 2022 Medium

    Linked IPO7's transport function to cell-fate control by showing it imports odontoblastic transcription factors and HDAC6 to bias differentiation toward odontoblastic over osteoblastic programs via RUNX2.

    Evidence Reciprocal Co-IP, knockdown/overexpression with differentiation assays, and nuclear-versus-total fractionation

    PMID:35922041

    Open questions at the time
    • Specific transcription-factor cargoes only partially identified
    • Single lab; differentiation phenotype not independently replicated
  5. 2023 Medium

    Extended IPO7's role to inflammatory signaling by identifying phospho-p38 as a direct interactor whose nuclear import drives NF-κB/p38 cytokine responses, with Sirt2 as a competing partner.

    Evidence Co-IP of IPO7 with p-p38 and Sirt2, siRNA knockdown, and pathway-activator rescue in dental pulp cells

    PMID:37769576

    Open questions at the time
    • Functional consequence of the IPO7–Sirt2 interaction not directly tested
    • Whether IPO7 imports other MAPK components unaddressed
  6. 2024 Medium

    Implicated IPO7 in inflammatory injury physiology by showing it is required for HMGB1 secretion, connecting its activity to downstream NET formation and PANoptosis in vivo.

    Evidence In vivo siRNA-nanoparticle knockdown in ventilator-induced lung injury, ELISA, and histological injury assessment

    PMID:38369216

    Open questions at the time
    • Direct mechanism by which IPO7 controls HMGB1 release not defined
    • Whether effect is via nuclear import of an upstream factor unclear
  7. 2025 Medium

    Revealed a viral hijacking mechanism in which Golgi-associated IPO7 is the receptor for HPV nuclear entry through direct binding of the L2 capsid C-terminus after COPI-dependent trafficking.

    Evidence IPO7 knockdown HPV infection assay, Golgi localization, L2 C-terminus pulldown, and COPI inhibition epistasis (preprint)

    PMID:bio_10.1101_2025.01.08.631933

    Open questions at the time
    • Preprint not yet peer-reviewed
    • How Golgi-localized IPO7 transits the virus to the pore unresolved
  8. 2025 Medium

    Provided the structural logic for IPO7 cargo handling, showing it functions as an importin-β heterodimer whose central cavity docks histone H1 only after importin-β allosterically activates it via a C-terminal nucleoporin-like region.

    Evidence AlphaFold3 model validated by cross-linking mass spectrometry, ITC, pulldown, and cryo-EM map refinement (preprint)

    PMID:bio_10.1101_2025.08.04.668392

    Open questions at the time
    • Preprint not yet peer-reviewed
    • Whether the heterodimer requirement generalizes to other cargoes untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unresolved how IPO7 selects among its diverse cargoes (ribosomal proteins, H1, Smad complexes, p-p38, transcription factors, viral L2) and whether shared structural determinants govern monomeric versus heterodimeric import.
  • No unified cargo-selectivity model across constitutive and signaling substrates
  • Regulation of monomer-versus-heterodimer assembly in cells unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140104 molecular carrier activity 4 GO:0008092 cytoskeletal protein binding 3 GO:0001618 virus receptor activity 1
Localization
GO:0005634 nucleus 2 GO:0005794 Golgi apparatus 1 GO:0005829 cytosol 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-168256 Immune System 2 R-HSA-9609507 Protein localization 2
Complex memberships
Importin-β/IPO7 heterodimer

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 RanBP7 (IPO7) directly binds and imports ribosomal proteins (rpL23a, rpS7, rpL5) into the nucleus in mammalian cells, acting as one of at least four importin beta-like transport receptors for this function. The binding occurs at a very basic region of rpL23a that serves as an archetypal import signal. In vitro nuclear import assay, direct binding (pulldown), competition experiments with ribosomal proteins and import receptors The EMBO journal High 9687515
2015 IPO7 (Imp7) mediates nuclear translocation of the Smad2/3/4 complex in TGF-β1-stimulated myofibroblasts. MAPK-specific inhibitors (ERK, JNK, p38) block Smad2/3/4 nuclear translocation by reducing Imp7/8 expression, demonstrating that Imp7 is required for this nuclear import step in TGF-β/Smad signaling. Subcellular fractionation, western blot for nuclear vs. cytoplasmic distribution, pharmacological inhibition of MAPK pathways, protein and mRNA expression analysis Molecular and cellular biochemistry Medium 25968067
2021 IPO7 is an essential gene in at least three cell lines, as demonstrated by CRISPR-Cas9 knockout being lethal; increasing IPO7 expression levels inhibits cell growth. EBV miRNAs target IPO7 mRNA to limit its accumulation, tuning host cell survival during infection. CRISPR-Cas9 mutagenesis (loss-of-function), overexpression of IPO7 with growth assay Frontiers in microbiology Medium 33664726
2022 IPO7 promotes odontoblastic differentiation and inhibits osteoblastic differentiation through distinct mechanisms: in dental papilla cells, IPO7 binds odontoblastic transcription factors and imports them into the nucleus, and inhibits total RUNX2 expression by promoting HDAC6 nuclear localization; in osteoblasts (MC3T3-E1), IPO7 inhibits RUNX2 nuclear distribution without affecting total RUNX2 protein levels. Co-immunoprecipitation (binding of IPO7 with transcription factors), knockdown (siRNA/shRNA) with differentiation assays, western blot for nuclear vs. total protein fractionation, overexpression experiments Stem cells (Dayton, Ohio) Medium 35922041
2023 IPO7 interacts with phospho-p38 (p-p38) under LPS stimulation in human dental pulp cells and mediates nuclear translocation of p-p38, thereby promoting NF-κB and p38 MAPK signaling and inflammatory cytokine production. Knockdown of IPO7 inhibits this pathway; increased IPO7–p-p38 binding is associated with decreased IPO7–Sirt2 binding. Co-immunoprecipitation (IPO7 with p-p38 and Sirt2), siRNA knockdown, pathway activator rescue experiments, western blot Molecular immunology Medium 37769576
2024 IPO7 (Imp7) is required for HMGB1 secretion/release; Imp7 siRNA nanoparticles inhibit HMGB1 production in a mouse model of ventilator-induced lung injury, thereby preventing neutrophil extracellular trap (NET) formation and PANoptosis in the liver via the TLR4/MyD88/TRAF6 pathway. SiRNA knockdown in vivo (nanoparticle delivery), ELISA, histological assessment of liver injury, mechanistic pathway analysis Biochimica et biophysica acta. Molecular basis of disease Medium 38369216
2025 IPO7 associates with the Golgi apparatus and is required for HPV transport from the Golgi to the nucleus during infection. The C-terminus of HPV capsid protein L2 directly binds IPO7 in a step dependent on prior COPI-mediated virus trafficking. Knockdown of IPO7 traps HPV in the Golgi and prevents nuclear entry. IPO7 knockdown (HPV infection inhibition assay), subcellular localization (Golgi association), direct binding (pulldown of L2 C-terminus with IPO7), COPI inhibition epistasis bioRxivpreprint Medium bio_10.1101_2025.01.08.631933
2025 The Impβ/IPO7 heterodimer interaction is mediated by a short C-terminal nucleoporin-like binding (NlB) region of IPO7 that contacts the outer surface of Impβ via FXFG nucleoporin motifs, and Impβ allosterically activates IPO7. Only the preassembled Impβ/IPO7 heterodimer (not either importin alone) enables proper binding of the H1 globular domain—positioned within the central cavity of IPO7—for nuclear translocation. The model was validated by cross-linking mass spectrometry, ITC, and pulldown against a cryo-EM map. AlphaFold3 structural prediction validated by cross-linking/mass spectrometry, isothermal titration calorimetry (ITC), pulldown experiments, and cryo-EM map refinement bioRxivpreprint Medium bio_10.1101_2025.08.04.668392
2021 IPO7 knockdown in pancreatic cancer cells suppresses p53 expression and induces MALAT1 lncRNA expression while reducing miR-129-5p; miR-129-5p post-transcriptionally regulates IPO7 (validated by luciferase reporter and RIP/pulldown), forming a positive feedback loop that promotes pancreatic cancer progression. siRNA knockdown, western blot, dual-luciferase reporter, RNA immunoprecipitation (RIP), pulldown assay, xenograft mouse model Frontiers in cell and developmental biology Low 34660566

Source papers

Stage 0 corpus · 16 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells. The EMBO journal 432 9687515
2012 Identification of ZNF217, hnRNP-K, VEGF-A and IPO7 as targets for microRNAs that are downregulated in prostate carcinoma. International journal of cancer 65 22815235
2017 Molecular Characterization of Carbapenemase-Producing Pseudomonas aeruginosa of Czech Origin and Evidence for Clonal Spread of Extensively Resistant Sequence Type 357 Expressing IMP-7 Metallo-β-Lactamase. Antimicrobial agents and chemotherapy 48 28993328
2018 SWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis. Journal of experimental & clinical cancer research : CR 41 30045750
2000 Elevated levels of RanBP7 mRNA in colorectal carcinoma are associated with increased proliferation and are similar to the transcription pattern of the proto-oncogene c-myc. Biochemical and biophysical research communications 26 10799331
2002 Carbapenem-resistant Pseudomonas aeruginosa in malaysia producing IMP-7 beta-lactamase. Antimicrobial agents and chemotherapy 25 12234862
2021 Pancreatic Cancer Progression Is Regulated by IPO7/p53/LncRNA MALAT1/MiR-129-5p Positive Feedback Loop. Frontiers in cell and developmental biology 23 34660566
2010 Metallo-beta-lactamase-producing imipenem-resistant Pseudomonas aeruginosa clinical isolates in a university teaching hospital in Malaysia: detection of IMP-7 and first identification of IMP-4, VIM-2, and VIM-11. Diagnostic microbiology and infectious disease 17 20462725
2015 MAPK inhibitors modulate Smad2/3/4 complex cyto-nuclear translocation in myofibroblasts via Imp7/8 mediation. Molecular and cellular biochemistry 14 25968067
2024 Imp7 siRNA nanoparticles protect against mechanical ventilation-associated liver injury by inhibiting HMGB1 production and NETs formation. Biochimica et biophysica acta. Molecular basis of disease 13 38369216
2018 Compound Astragalus and Salvia miltiorrhiza extract inhibits hepatocarcinogenesis via modulating TGF-β/TβR and Imp7/8. Experimental and therapeutic medicine 12 30112050
2023 Systemic cytokines inhibition with Imp7 siRNA nanoparticle ameliorates gut injury in a mouse model of ventilator-induced lung injury. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 11 37516020
2022 IPO7 Promotes Odontoblastic Differentiation and Inhibits Osteoblastic Differentiation Through Regulation of RUNX2 Expression and Translocation. Stem cells (Dayton, Ohio) 6 35922041
2022 IPO7 promotes pancreatic cancer progression via regulating ERBB pathway. Clinics (Sao Paulo, Brazil) 5 35588577
2023 IPO7 promotes lipopolysaccharide-induced inflammatory responses in human dental pulp cells via p38 MAPK and NF-κB signaling pathways. Molecular immunology 3 37769576
2021 Epstein-Barr Virus Limits the Accumulation of IPO7, an Essential Gene Product. Frontiers in microbiology 2 33664726

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