| 2012 |
IPMK physically interacts with nuclear receptor SF-1 and phosphorylates SF-1-bound PIP₂ to generate SF-1-PIP₃; this phosphorylation requires PIP₂ to be bound in the hydrophobic pocket of SF-1 and is specific to IPMK (not type 1 p110 PI3Ks). The resulting SF-1-PIP₃ is dephosphorylated by PTEN, and silencing IPMK reduces SF-1 transcriptional activity. |
In vitro lipid kinase assay with SF-1-PIP₂ complex, competitive displacement of PIP₂ from SF-1, comparison with p110 PI3Ks, PTEN dephosphorylation assay, IPMK siRNA knockdown + transcriptional reporter |
Science signaling |
High |
22715467
|
| 2012 |
In response to Wnt3a stimulation, Dvl3 translocates IPMK to the cell membrane within 5 minutes; this translocation requires the PDZ domain and COOH-terminal proline-rich tail of Dvl3, and the NH2-terminal variable region of IPMK. IPMK membrane translocation is obligate for its function in canonical Wnt signaling. Re-targeting of IPMKΔN to the membrane with a CAAX box rescues Wnt3a downstream signaling. |
Live-cell imaging of IPMK translocation, co-immunoprecipitation, deletion mutants, CAAX-box rescue experiment, canonical Wnt reporter assay |
Cellular signalling |
Medium |
22940627
|
| 2014 |
IPMK physically interacts with LKB1 and is required for metformin- and AICAR-induced LKB1-AMPK activation. A dominant-negative peptide that disrupts the IPMK-LKB1 protein-protein interaction attenuates metformin-mediated AMPK activation, establishing IPMK as an upstream regulator of LKB1-AMPK signaling. |
IPMK−/− MEF complementation, dominant-negative peptide disruption of IPMK-LKB1 interaction, AMPK phosphorylation western blot, overexpression rescue |
Molecular endocrinology |
Medium |
24877601
|
| 2016 |
IPMK overexpression promotes myogenic differentiation, activates the cyclin D3 promoter via c-jun binding (same pathway as PLC-β1), and increases nuclear translocation/accumulation of β-catenin in differentiating myoblasts, leading to higher MyoD activation. PLC-β1, IPMK, and β-catenin act in the same signaling pathway. |
Overexpression in myoblasts, promoter-reporter assays, western blot for myogenic markers, immunofluorescence for β-catenin nuclear translocation, epistasis by co-overexpression |
Oncotarget |
Medium |
27563828
|
| 2018 |
Crystal structure of human IPMK lacking disordered domains (ΔIPMK) at 2.5 Å confirms the conserved ATP-grasp fold. Kinetic analyses show that (i) the disordered domains suppress IPMK catalytic activity (1.8-fold increase in kcat for PIP₂ upon removal), and (ii) a putative 'ATP-clamp' sequence in the N-terminal disordered domain stabilizes ATP binding: its removal increases KM for ATP 4.9-fold. |
X-ray crystallography at 2.5 Å, enzyme kinetics (KM, kcat) for PIP₂ and ATP, comparison of wild-type vs. truncation constructs |
Scientific reports |
High |
30420721
|
| 2019 |
IPMK is required for autophagy in cell lines and mouse liver; this regulation does not require IPMK catalytic activity. IPMK directly binds both AMPK and ULK1, forming a ternary complex that facilitates AMPK-dependent ULK1 phosphorylation. A second axis, IPMK-AMPK-Sirt1, mediates deacetylation of histone H4K16 to promote autophagy-related transcription. IPMK deletion virtually abolishes lipophagy and promotes liver damage. |
IPMK genetic deletion in cell lines and mice, co-immunoprecipitation of IPMK-AMPK-ULK1 ternary complex, kinase-dead IPMK rescue, ULK1 phosphorylation assay, H4K16ac measurement, lipophagy and liver pathology readouts |
Cell reports |
High |
30840891
|
| 2020 |
C. elegans IPMK-1 (ortholog of mammalian IPMK) requires its IP3-kinase activity for proper defecation rhythms and postembryonic development. These defects are rescued by loss of the IP3-phosphatase IPP-5 or supplemental Ca²⁺, placing IPMK-1 upstream of IP3/Ca²⁺ signaling. |
C. elegans deletion mutant (ipmk-1(tm2687)), tissue-specific rescue with GFP::IPMK-1, kinase-dead mutant, epistasis with ipp-5 loss-of-function, Ca²⁺ supplementation rescue |
Cell calcium |
Medium |
33316585
|
| 2021 |
IPMK binds TRAF6 and reduces its K48-linked polyubiquitination (i.e., protects TRAF6 from proteasomal degradation) under RANKL stimulation. The antioxidant curcumenol (CUL) blocks the IPMK-TRAF6 interaction, promoting K48-linked ubiquitination and degradation of TRAF6, thereby suppressing osteoclastogenesis. |
Co-immunoprecipitation of IPMK-TRAF6, ubiquitination assays (K48- and K63-linkage), IPMK siRNA knockdown, RANKL-induced osteoclast differentiation assay, in vivo OVX mouse model |
Journal of bone and mineral research |
Medium |
33956362
|
| 2022 |
IPMK-deficient hepatocytes exhibit decreased insulin-induced Akt-FoxO1 signaling and increased mRNA of gluconeogenic enzymes Pck1 and G6pc. Hepatocyte-specific IPMK deletion in mice exacerbates high-fat diet-induced hyperglycemia and reduces Akt phosphorylation in liver, establishing IPMK as a positive regulator of hepatic insulin signaling. |
Hepatocyte-specific IPMK knockout mice (high-fat diet), in vitro IPMK-KO hepatocytes, IPMK re-expression rescue, Akt phosphorylation western blot, pyruvate tolerance test |
Journal of cellular physiology |
Medium |
35822903
|
| 2023 |
In macrophages, LPS stimulation triggers miR-181c-mediated downregulation of IPMK (via a conserved binding site in the IPMK 3'UTR). Preventing this downregulation (by genomic deletion of the miR-181c binding site) reduces TLR4-induced NF-κB signaling and proinflammatory cytokine production, and impairs K63-linked ubiquitination of TRAF6, establishing IPMK as a positive regulator of TRAF6-dependent TLR4 signaling. |
miR-181c mimic transfection, 3'UTR luciferase reporter, CRISPR deletion of miR-181c binding site in RAW 264.7 cells, TRAF6 K63-ubiquitination assay, cytokine ELISA, NF-κB signaling western blot |
Biomolecules |
Medium |
36830701
|
| 2024 |
IPMK non-catalytically promotes PLCγ1 Y783 phosphorylation in T cells by stabilizing the PLCγ1-Sam68 complex. IPMK binds Sam68 (identified by yeast two-hybrid screening), and this interaction facilitates Sam68-PLCγ1 association and subsequent PLCγ1 phosphorylation. Disrupting IPMK-Sam68 binding with dominant-negative peptides impairs PLCγ1 phosphorylation, dampens Ca²⁺ signaling and IL-2 production. |
Yeast two-hybrid screening, co-immunoprecipitation, CD4-T cell-specific IPMK knockout mice (ConA hepatitis model), dominant-negative peptide, PLCγ1 Y783 phospho-western, Ca²⁺ measurement, IL-2 assay |
Cell communication and signaling |
High |
39478550
|
| 2024 |
IPMK is required for full HDAC3 enzyme activity in human cells: IPMK knockout decreases cellular inositol phosphate levels (IP4/IP5/IP6), reduces HDAC3 deacetylase activity, and increases histone H4 acetylation. Wild-type but not kinase-dead IPMK rescues HDAC3 activity in knockout cells; exogenous Ins(1,4,5,6)P4 addition to immunoprecipitated HDAC3 from IKO cells fully rescues activity, while control inositol does not. |
IPMK knockout in U251 glioblastoma cells, HDAC deacetylase enzyme assay on immunoprecipitated complexes, mass spectrometry of histone H4 acetylation, ChIP-seq, kinase-dead IPMK rescue, exogenous IP4 rescue assay |
bioRxivpreprint |
High |
38746349
|
| 2025 |
IPMK enhances the DNA-binding activity of transcription factor SRF by binding to SRF's intrinsically disordered region and inducing conformational changes detected by single-molecule FRET. In live cell nuclei, IPMK depletion reduces chromatin residence time of SRF, while elevated IPMK levels extend it. This IPMK-mediated chaperone-like activity promotes stable SRF-chromatin association. |
Protein-induced fluorescence enhancement (PIFE) single-molecule assay, single-molecule FRET, real-time tracking of SRF loci in live cells, biochemical binding assay, IPMK depletion/overexpression |
Nucleic acids research |
High |
39777465
|
| 2025 |
IPMK is ubiquitinated at K48 and K11 linkages (targeting it for proteasomal degradation) and this ubiquitination is regulated by UFD1s-dependent competition for the E3 ligase MARCH7. Under stress, UFD1s reduces K48/K11 ubiquitination of IPMK, thereby modulating IPMK stability and its downstream effects on autophagy and fatty acid oxidation. |
Ubiquitination linkage assays (K48, K11, K63), E3 ligase identification (MARCH7), co-immunoprecipitation, IPMK protein stability assays, autophagy and fatty acid oxidation readouts in UFD1s-deficient mice |
Nature communications |
Medium |
40691175
|
| 2025 |
14 co-crystal structures (1.7–2.0 Å resolution) of human IPMK kinase domain with ATP-competitive inhibitors reveal an unoccupied pocket in the ATP-binding site and two ordered water molecules in hydrogen-bonding networks; engagement of this pocket by inhibitors is associated with highest potency. |
X-ray crystallography (14 co-crystal structures), radiolabeled kinase assay (IC50), isothermal titration calorimetry (KD) |
Journal of medicinal chemistry |
High |
41237254
|
| 2025 |
IPMK kinase activity is required for synthesis of higher-order inositol phosphates (InsP4, InsP5) in human cells; pharmacological IPMK inhibition selectively reduces cellular InsP5 without altering InsP6, revealing InsP5 as a direct cellular product whose accumulation depends on IPMK kinase activity. |
IPMK kinase inhibitors (UNC7437, UNC9750) in metabolically labeled U251-MG cells, tritiated inositol phosphate level measurement, transcriptome analysis |
Journal of medicinal chemistry |
Medium |
40709844
|
| 2026 |
In C. elegans muscle, ipmk-1 loss causes abnormal clumping of integrin adhesion complex (IAC) proteins at muscle cell boundaries and decreased locomotion; ipmk-1; pix-1 doubles display large gaps between muscle cells. Genetic analysis with daf-18 (PTEN) partial suppression of the clumping phenotype, and PIP3 localization studies, indicate that the PIP3/PIP2 ratio at the muscle cell boundary is important for proper IAC organization, and that the MCB defect is due to decreased PIP3 rather than decreased IP3/Ca²⁺ signaling. |
C. elegans ipmk-1 loss-of-function mutants, double mutants (ipmk-1; pix-1; ipmk-1; pak-1; ipmk-1; rrc-1; ipmk-1; ipp-5; ipmk-1; daf-18), PIP3 localization (immunofluorescence), GCaMP Ca²⁺ measurements, locomotion assays |
Genetics |
Medium |
41697956
|
| 2026 |
Suppression or acute pharmacological inhibition of IPMK in pancreatic β-cells selectively reduces cellular IP5 levels without altering IP6, and impairs basal and insulin-stimulated mTORC1 signaling (particularly under low growth factor conditions) by accelerating termination of the mTORC1 signal rather than preventing its initiation. IP5 depletion does not impair PI3K/Akt activation, implicating IP5 as a metabolite that stabilizes active mTORC1. |
IPMK inhibitor treatment, ITPK1 knockdown, combined inhibition, IP5/IP6/IP7 metabolite measurements, mTORC1 substrate phosphorylation western blots, PI3K/Akt activation assay in pancreatic β-cells |
bioRxivpreprint |
Medium |
41867875
|
| 2024 |
IPMK binds to HDAC3 and drives InsP6 synthesis; InsP6 selectively activates HDAC3 at 10 nM by recruiting the DAD domain of its corepressor. IPMK deletion diminishes HDAC3 activation, causes histone hyperacetylation and MMP gene transcription, and compromises intestinal barrier integrity; InsP6 treatment rescues these effects. |
Co-immunoprecipitation (IPMK-HDAC3), HDAC3 enzyme activity assay, IPMK knockout cells/mice, InsP6 rescue, intestinal permeability assays, inflammatory bowel disease model |
bioRxivpreprint |
Medium |
bio_10.1101_2024.09.15.613154
|
| 2024 |
IPMK is recruited to the Star-PAP nuclear RNA polymerase complex, where it modifies Star-PAP-linked phosphoinositides (converting PIP2 to PIP3). Knockdown of IPMK reduces expression of Star-PAP target genes, placing IPMK in a nuclear phosphoinositide signalosome that regulates poly(A) polymerase activity in response to stress. |
Co-immunoprecipitation of IPMK with Star-PAP complex, phosphoinositide coupling assays, IPMK knockdown + Star-PAP target gene expression |
bioRxivpreprint |
Low |
bio_10.1101_2024.07.01.601467
|