Affinage

IPCEF1

Interactor protein for cytohesin exchange factors 1 · UniProt Q8WWN9

Length
437 aa
Mass
49.0 kDa
Annotated
2026-06-10
14 papers in source corpus 4 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

IPCEF1 is a scaffold protein that potentiates cytohesin-family ARF guanine nucleotide exchange factor signaling to drive ARF6-dependent membrane dynamics and cell migration (PMID:12920129, PMID:22085542). It binds the coiled-coil domain of cytohesin 2 (and other cytohesin-family ARF GEFs) through its C-terminal 121 amino acids, and this direct interaction is required for IPCEF1 to translocate from the cytosol to the plasma membrane following EGF stimulation (PMID:12920129). At the membrane, IPCEF1 acts as a positive modulator of cytohesin 2 GEF activity, enhancing ARF6-GTP formation both in vitro and in cells (PMID:12920129). Consistent with this, the CNK3/IPCEF1 fusion protein expressed in epithelial cells is required for HGF-induced ARF6 activation and cell migration (PMID:22085542). Beyond epithelial migration, IPCEF1 negatively regulates TLR2-dependent migratory capacity and pathogenicity of Th17 cells in an experimental autoimmune encephalomyelitis model (PMID:34192530).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2003 High

    Established that IPCEF1 is a direct binding partner of cytohesin-family ARF GEFs, defining the physical interaction module that underlies its function.

    Evidence Yeast two-hybrid, GST pull-down with deletion mutants, and co-immunoprecipitation in mammalian cells mapping the IPCEF1 C-terminal 121 residues to the cytohesin 2 coiled-coil domain

    PMID:12920129

    Open questions at the time
    • Does not define which cytohesin family members predominate in specific cell types
    • Structural basis of the C-terminus/coiled-coil interface not resolved
  2. 2003 High

    Showed that IPCEF1 membrane recruitment is signal-dependent and requires the cytohesin 2 interaction, connecting the binding event to spatial regulation.

    Evidence Immunofluorescence of wild-type vs. cytohesin-binding-deficient IPCEF1 in EGF-stimulated mammalian cells

    PMID:12920129

    Open questions at the time
    • Mechanism linking EGF receptor activation to cytohesin 2 translocation not defined
    • Whether IPCEF1 recruits cytohesin or vice versa at the membrane is not disentangled
  3. 2003 High

    Demonstrated the functional consequence of the interaction: IPCEF1 enhances cytohesin 2 GEF output toward ARF6, establishing it as a positive modulator rather than a passive binder.

    Evidence In vitro ARF-GTP formation assay and in vivo ARF6 activation assay in mammalian cells

    PMID:12920129

    Open questions at the time
    • Molecular basis of GEF stimulation (allosteric vs. localization effect) not resolved
    • Substrate selectivity among ARF isoforms not fully characterized
  4. 2011 High

    Placed IPCEF1 in a physiological signaling context by showing the CNK3/IPCEF1 fusion protein is required for HGF-induced ARF6 activation and epithelial migration.

    Evidence Molecular identification of the fusion protein plus siRNA knockdown with ARF6 activation and migration readouts in MDCK and CaCo-2 cells

    PMID:22085542

    Open questions at the time
    • Contribution of the CNK3 portion vs. IPCEF1 portion not separated
    • Downstream effectors of ARF6 driving migration not identified
  5. 2021 Medium

    Extended IPCEF1 function to immune cells, identifying it as a negative regulator of TLR2-driven Th17 migration and autoimmune pathogenicity.

    Evidence Retroviral enforced expression of Ipcef1 in Th17 cells with in vitro migration assay and in vivo EAE model

    PMID:34192530

    Open questions at the time
    • Whether the Th17 effect involves cytohesin/ARF6 signaling is not established
    • Loss-of-function evidence to complement gain-of-function is absent
    • Mechanism linking TLR2 to IPCEF1 not defined
  6. 2009 Low

    Correlated IPCEF1 expression with peripheral nerve injury, raising a possible role in injury-associated receptor trafficking.

    Evidence RT-PCR quantification of IPCEF1 mRNA in rat DRG after nerve injury models

    PMID:19756519

    Open questions at the time
    • Correlative mRNA measurement only, no functional test
    • No link to cytohesin/ARF6 activity in neurons demonstrated

Open questions

Synthesis pass · forward-looking unresolved questions
  • How IPCEF1's scaffolding of cytohesin/ARF6 signaling integrates across distinct contexts (epithelial migration vs. Th17 immunity) and whether a single mechanism underlies its opposing migratory roles remains unresolved.
  • No unifying mechanism connecting positive epithelial migration role to negative Th17 migration role
  • No structural model of the IPCEF1-cytohesin complex
  • Endogenous loss-of-function phenotypes largely uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0098772 molecular function regulator activity 1
Localization
GO:0005829 cytosol 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-5653656 Vesicle-mediated transport 1
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 IPCEF1 binds cytohesin 2 via the C-terminal 121 amino acids of IPCEF1 and the coiled-coil domain of cytohesin 2, as determined by yeast two-hybrid, GST pull-down with deletion mutants, and co-immunoprecipitation in mammalian cells. IPCEF1 also interacts with other cytohesin family ARF GEFs, indicating conserved interaction across the family. Yeast two-hybrid screening, GST pull-down with deletion mutant analysis, co-immunoprecipitation in mammalian cells The Journal of biological chemistry High 12920129
2003 In unstimulated cells IPCEF1 co-localizes with cytohesin 2 in the cytosol; upon EGF stimulation, IPCEF1 translocates to the plasma membrane via binding to cytohesin 2. A deletion mutant of IPCEF1 lacking the cytohesin 2-binding site fails to co-migrate to the membrane, demonstrating that membrane recruitment of IPCEF1 depends on its direct interaction with cytohesin 2. Immunofluorescence microscopy with wild-type and deletion-mutant IPCEF1 in EGF-stimulated mammalian cells The Journal of biological chemistry High 12920129
2003 IPCEF1 increases cytohesin 2-stimulated ARF-GTP formation both in vitro and in vivo, demonstrating that IPCEF1 functions as a positive modulator of cytohesin 2 GEF activity toward ARF6. In vitro ARF-GTP formation assay and in vivo ARF6 activation assay in mammalian cells The Journal of biological chemistry High 12920129
2011 IPCEF1 is the C-terminal half of a fused CNK3/IPCEF1 protein expressed in MDCK and CaCo-2 cells. Knockdown of this fused protein impairs HGF-induced Arf6 activation and cell migration, establishing that the CNK3-IPCEF1 fusion protein is required for HGF-dependent Arf6 activation. Identification of fused protein by molecular cloning/expression analysis; siRNA knockdown with Arf6 activation assay and migration assay in MDCK and CaCo-2 cells Experimental cell research High 22085542
2021 Enforced expression of Ipcef1 in Th17 cells abolishes TLR2-dependent increases in migratory capacity and severely impairs the ability of Th17 cells to induce experimental autoimmune encephalomyelitis (EAE), identifying IPCEF1 as a regulator of Th17 cell migration downstream of TLR2 signaling. Retroviral enforced expression of Ipcef1 in Th17 cells; in vitro migration assay; in vivo EAE disease model Cell reports Medium 34192530
2009 IPCEF1 mRNA is expressed in adult rat dorsal root ganglia (DRG), and peripheral nerve injury (spinal nerve ligation/transection or sciatic nerve transection) significantly upregulates IPCEF1 mRNA in injured DRGs, suggesting a role for IPCEF1 in nerve injury-induced membrane receptor trafficking in vivo. RT-PCR quantification of IPCEF1 mRNA in rat DRG following peripheral nerve injury models Naunyn-Schmiedeberg's archives of pharmacology Low 19756519

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND). PLoS genetics 108 26305897
2018 Eleven loci with new reproducible genetic associations with allergic disease risk. The Journal of allergy and clinical immunology 53 29679657
2003 Interaction protein for cytohesin exchange factors 1 (IPCEF1) binds cytohesin 2 and modifies its activity. The Journal of biological chemistry 53 12920129
2011 CNK3 and IPCEF1 produce a single protein that is required for HGF dependent Arf6 activation and migration. Experimental cell research 27 22085542
2021 Oxidative Stress Genes in Diabetes Mellitus Type 2: Association with Diabetic Kidney Disease. Oxidative medicine and cellular longevity 23 34545296
2021 Toll-like receptor 2 induces pathogenicity in Th17 cells and reveals a role for IPCEF in regulating Th17 cell migration. Cell reports 21 34192530
2015 Somatic amplifications and deletions in genome of papillary thyroid carcinomas. Endocrine 21 25863487
2009 Peripheral nerve injury up-regulates expression of interactor protein for cytohesin exchange factor 1 (IPCEF1) mRNA in rat dorsal root ganglion. Naunyn-Schmiedeberg's archives of pharmacology 12 19756519
2021 Circular RNA profiling reveals a potential role of hsa_circ_IPCEF1 in papillary thyroid carcinoma. Molecular medicine reports 10 34165176
2022 Screening and validation of lymph node metastasis risk-factor genes in papillary thyroid carcinoma. Frontiers in endocrinology 9 36465624
2022 Construction of a Signature Model to Predict the Radioactive Iodine Response of Papillary Thyroid Cancer. Frontiers in endocrinology 4 35634509
2024 IPCEF1: Expression Patterns, Clinical Correlates and New Target of Papillary Thyroid Carcinoma. Journal of Cancer 2 39513122
2026 RNAseq-based meta-analyses revealed tumor suppressor-inducer fusion events in liver, oral, and ovarian cancer in the Indian population: a cancer cell surviving mechanism. Nucleosides, nucleotides & nucleic acids 0 41661231
2026 Placental DNA methylation mediates the prenatal maternal stress-childhood allergy association: A cohort study. Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology 0 41937365

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