Affinage

CNKSR3

Connector enhancer of kinase suppressor of ras 3 · UniProt Q6P9H4

Round 2 corrected
Length
555 aa
Mass
61.9 kDa
Annotated
2026-04-28
112 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CNKSR3 (CNK3) is an aldosterone-induced scaffold protein that coordinates epithelial sodium channel (ENaC) regulation in the renal cortical collecting duct. It is a direct transcriptional target of the mineralocorticoid receptor, with its promoter containing two functional aldosterone-responsive elements bound by MR (PMID:19567370). CNKSR3 assembles a ~1.0–1.2 MDa plasma membrane complex containing ENaC, SGK1, and the E3 ubiquitin ligase Nedd4-2 in a PDZ domain–dependent manner, thereby enhancing ENaC-mediated transepithelial sodium transport and concurrently suppressing MEK/MAPK phosphorylation (PMID:22851176, PMID:19567370). In epithelial cells, the CNKSR3 locus encodes a fused CNK3/IPCEF1 protein that is required for HGF-induced Arf6 activation and cell migration (PMID:22085542).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2009 Medium

    Establishing that CNKSR3 is a mineralocorticoid receptor target gene required for ENaC-mediated sodium transport answered how aldosterone transcriptionally controls ENaC activity through novel intermediaries, and simultaneously linked CNKSR3 to MAPK pathway suppression.

    Evidence ChIP of MR at the cnksr3 promoter, stable overexpression and shRNA knockdown in CCD cell lines, electrophysiology, and phospho-MEK Western blot

    PMID:19567370

    Open questions at the time
    • Not independently replicated in a second laboratory or in vivo model
    • Mechanism by which CNKSR3 suppresses MEK phosphorylation is undefined
    • Direct physical interaction between CNKSR3 and ENaC pathway components was not demonstrated
  2. 2011 Medium

    Discovering that the CNKSR3 locus produces a fused CNK3/IPCEF1 protein in epithelial cells revealed a second signaling axis — HGF/Arf6-dependent cell migration — broadening the functional scope of CNKSR3 beyond sodium transport.

    Evidence siRNA knockdown of CNK3/IPCEF1 in MDCK and CaCo-2 cells, Arf6-GTP pull-down assay, Transwell migration assay, RT-PCR and Western blot confirming fused transcript

    PMID:22085542

    Open questions at the time
    • Single-study finding not independently confirmed
    • Relative contributions of the CNK3 versus IPCEF1 moieties to Arf6 activation are unresolved
    • Whether the fused protein operates in the renal collecting duct context is unknown
  3. 2012 High

    Demonstrating that CNKSR3 physically scaffolds ENaC, SGK1, and Nedd4-2 into a large membrane complex via its PDZ domain resolved the molecular mechanism through which it promotes aldosterone-stimulated sodium transport.

    Evidence Reciprocal co-immunoprecipitation, size-exclusion chromatography/native gel analysis, PDZ domain deletion mutagenesis, and functional ENaC current measurements in aldosterone-treated renal epithelial cells

    PMID:22851176

    Open questions at the time
    • No in vivo knockout or knockin model confirming physiological relevance
    • Structural basis of PDZ-mediated interactions with each partner is unknown
    • Whether scaffold assembly is dynamically regulated beyond aldosterone induction is unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the in vivo renal phenotype of CNKSR3 loss, the structural details of PDZ-mediated complex assembly, how CNKSR3 suppresses MEK phosphorylation, and whether the CNK3/IPCEF1 fusion protein and the ENaC-scaffold function operate in the same or distinct cell types.
  • No animal model phenotype reported
  • No structural data for CNKSR3 or its complexes
  • Relationship between the ENaC-scaffold and Arf6/migration functions is undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-382551 Transport of small molecules 2

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 CNKSR3 (CNK3) is a direct transcriptional target of the mineralocorticoid receptor (MR): the cnksr3 promoter contains two functional aldosterone-responsive regions bound by MR (confirmed by chromatin immunoprecipitation), and CNKSR3 mRNA is upregulated in response to physiological aldosterone concentrations. CNKSR3 is highly expressed in the renal cortical collecting duct (CCD). CCD cell lines stably overexpressing CNKSR3 showed increased ENaC-mediated transepithelial sodium transport, while CNKSR3 silencing reduced it, establishing that CNKSR3 expression is required for ENaC-mediated sodium transport. In parallel, CNKSR3 expression correlated with decreased MEK phosphorylation, suggesting it modulates MAPK pathway activity. Chromatin immunoprecipitation (ChIP) of MR at the cnksr3 promoter; stable overexpression and shRNA knockdown cell lines; electrophysiological measurement of transepithelial sodium transport; Western blot for MEK phosphorylation FASEB journal : official publication of the Federation of American Societies for Experimental Biology Medium 19567370
2011 CNK3 (CNKSR3) and IPCEF1 encode a single fused protein in MDCK and CaCo-2 epithelial cells. This CNK3/IPCEF1 protein is required for HGF-induced Arf6 activation and cell migration: siRNA knockdown of CNK3/IPCEF1 impaired HGF-induced Arf6 activation and reduced cell migration in response to HGF treatment, placing CNK3 as a scaffold downstream of HGF signaling for Arf6-dependent epithelial motility. siRNA knockdown; Arf6 GTP-loading (activation) assay; migration assay; RT-PCR and Western blot confirming fused transcript/protein Experimental cell research Medium 22085542
2012 CNKSR3 (CNK3) acts as a molecular scaffold that coordinates assembly of a large (~1.0–1.2 MDa) plasma membrane ENaC-regulatory complex in response to aldosterone. CNK3 physically interacts with ENaC, the E3 ubiquitin ligase Nedd4-2, and the kinase SGK1; it enhances interactions among these components; and it stimulates ENaC function in a PDZ domain-dependent, aldosterone-induced manner. Loss of the PDZ domain abolishes the stimulatory effect, demonstrating domain-specificity of the scaffold function. Co-immunoprecipitation; size-exclusion chromatography/native gel to define complex size; PDZ domain deletion mutagenesis; functional ENaC current measurements; aldosterone treatment of renal epithelial cells The Journal of biological chemistry High 22851176

Source papers

Stage 0 corpus · 112 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2000 Interactions of the PDZ-protein MAGI-1 with adenovirus E4-ORF1 and high-risk papillomavirus E6 oncoproteins. Oncogene 244 11077444
2012 Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. Nature genetics 241 22797727
2012 Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2. Annals of neurology 232 22451204
2020 Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. Nature cell biology 194 32203420
1997 MAGI-1, a membrane-associated guanylate kinase with a unique arrangement of protein-protein interaction domains. The Journal of biological chemistry 171 9395497
2000 MAGI-1 interacts with beta-catenin and is associated with cell-cell adhesion structures. Biochemical and biophysical research communications 146 10772923
2003 JAM4, a junctional cell adhesion molecule interacting with a tight junction protein, MAGI-1. Molecular and cellular biology 141 12773569
2005 MAGI-1 is required for Rap1 activation upon cell-cell contact and for enhancement of vascular endothelial cadherin-mediated cell adhesion. Molecular biology of the cell 128 16339077
2017 The human cytoplasmic dynein interactome reveals novel activators of motility. eLife 118 28718761
2002 Interaction of two actin-binding proteins, synaptopodin and alpha-actinin-4, with the tight junction protein MAGI-1. The Journal of biological chemistry 115 12042308
2010 Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Molecular medicine (Cambridge, Mass.) 108 20379614
2020 Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases. Molecular cell 88 32707033
2002 MAGI-1: a widely expressed, alternatively spliced tight junction protein. Experimental cell research 82 11969287
2010 A systematic analysis of human papillomavirus (HPV) E6 PDZ substrates identifies MAGI-1 as a major target of HPV type 16 (HPV-16) and HPV-18 whose loss accompanies disruption of tight junctions. Journal of virology 74 21123374
2004 Endothelial adhesion molecule ESAM binds directly to the multidomain adaptor MAGI-1 and recruits it to cell contacts. Experimental cell research 72 15383320
2001 The membrane-associated guanylate kinase protein MAGI-1 binds megalin and is present in glomerular podocytes. Journal of the American Society of Nephrology : JASN 60 11274227
2005 MAGI1 recruits Dll1 to cadherin-based adherens junctions and stabilizes it on the cell surface. The Journal of biological chemistry 58 15908431
2008 TRIP6, a novel molecular partner of the MAGI-1 scaffolding molecule, promotes invasiveness. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 57 19017743
2009 Neuron-specific regulation of associative learning and memory by MAGI-1 in C. elegans. PloS one 55 19551147
2005 MAGI-1 is a component of the glomerular slit diaphragm that is tightly associated with nephrin. Laboratory investigation; a journal of technical methods and pathology 55 16155592
2023 A central chaperone-like role for 14-3-3 proteins in human cells. Molecular cell 54 36931259
2011 Identification of MAGI1 as a tumor-suppressor protein induced by cyclooxygenase-2 inhibitors in colorectal cancer cells. Oncogene 52 21666716
2009 Cnksr3 is a direct mineralocorticoid receptor target gene and plays a key role in the regulation of the epithelial sodium channel. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 52 19567370
2004 Delta proteins and MAGI proteins: an interaction of Notch ligands with intracellular scaffolding molecules and its significance for zebrafish development. Development (Cambridge, England) 48 15509766
2019 MAGI1 Mediates eNOS Activation and NO Production in Endothelial Cells in Response to Fluid Shear Stress. Cells 47 31035633
2008 MAGI-1, a candidate stereociliary scaffolding protein, associates with the tip-link component cadherin 23. The Journal of neuroscience : the official journal of the Society for Neuroscience 45 18971469
2011 The structural and dynamic response of MAGI-1 PDZ1 with noncanonical domain boundaries to the binding of human papillomavirus E6. Journal of molecular biology 44 21238461
2019 MAGI1 as a link between endothelial activation and ER stress drives atherosclerosis. JCI insight 43 30944250
2001 Identification of mNET1 as a candidate ligand for the first PDZ domain of MAGI-1. Biochemical and biophysical research communications 43 11350080
2014 Restoration of MAGI-1 expression in human papillomavirus-positive tumor cells induces cell growth arrest and apoptosis. Journal of virology 42 24696483
2012 MAGI1 copy number variation in bipolar affective disorder and schizophrenia. Biological psychiatry 40 22381734
2009 MAGI-1 modulates AMPA receptor synaptic localization and behavioral plasticity in response to prior experience. PloS one 39 19242552
2022 In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker. Analytical chemistry 38 35575683
2012 A genome-wide functional screen shows MAGI-1 is an L1CAM-dependent stabilizer of apical junctions in C. elegans. Current biology : CB 38 22981773
2005 Identification and characterization of a novel tight junction-associated family of proteins that interacts with a WW domain of MAGI-1. Biochimica et biophysica acta 38 16019084
2022 A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins. Viruses 37 35337019
2009 MAGI-1 interacts with Slo1 channel proteins and suppresses Slo1 expression on the cell surface. American journal of physiology. Cell physiology 36 19403801
2010 Surface plasmon resonance analysis of the binding of high-risk mucosal HPV E6 oncoproteins to the PDZ1 domain of the tight junction protein MAGI-1. Journal of molecular recognition : JMR 34 20842623
2017 MAGI1 inhibits migration and invasion via blocking MAPK/ERK signaling pathway in gastric cancer. Chinese journal of cancer research = Chung-kuo yen cheng yen chiu 33 28373751
2019 Long noncoding RNA MAGI1-IT1 regulates cardiac hypertrophy by modulating miR-302e/DKK1/Wnt/beta-catenin signaling pathway. Journal of cellular physiology 32 31222747
2014 Regulation and involvement in cancer and pathological conditions of MAGI1, a tight junction protein. Anticancer research 32 24982328
2011 CNK3 and IPCEF1 produce a single protein that is required for HGF dependent Arf6 activation and migration. Experimental cell research 27 22085542
2012 Scaffold protein connector enhancer of kinase suppressor of Ras isoform 3 (CNK3) coordinates assembly of a multiprotein epithelial sodium channel (ENaC)-regulatory complex. The Journal of biological chemistry 26 22851176
2021 MAGI1, a Scaffold Protein with Tumor Suppressive and Vascular Functions. Cells 25 34198584
2019 Long noncoding RNA MAGI1-IT1 promoted invasion and metastasis of epithelial ovarian cancer via the miR-200a/ZEB axis. Cell cycle (Georgetown, Tex.) 25 31122127
2013 Single nucleotide polymorphism array analysis of uveal melanomas reveals that amplification of CNKSR3 is correlated with improved patient survival. The American journal of pathology 25 23357503
2013 Human T-cell leukemia virus type 1 Tax protein interacts with and mislocalizes the PDZ domain protein MAGI-1. Cancer science 24 23279616
2007 Cleavage of MAGI-1, a tight junction PDZ protein, by caspases is an important step for cell-cell detachment in apoptosis. Apoptosis : an international journal on programmed cell death 24 17191119
2012 Differential gene expression profile in PBMCs from subjects with AERD and ATA: a gene marker for AERD. Molecular genetics and genomics : MGG 23 22457146
2010 Interaction of endothelial cell-selective adhesion molecule and MAGI-1 promotes mature cell-cell adhesion via activation of RhoA. Genes to cells : devoted to molecular & cellular mechanisms 23 20298433
2016 MAGI-1 Interacts with Nephrin to Maintain Slit Diaphragm Structure through Enhanced Rap1 Activation in Podocytes. The Journal of biological chemistry 21 27707879
2012 The PDZ1 and PDZ3 domains of MAGI-1 regulate the eight-exon isoform of the coxsackievirus and adenovirus receptor. Journal of virology 21 22718816
2018 Significance of miR-15a-5p and CNKSR3 as Novel Prognostic Biomarkers in Non-Small Cell Lung Cancer. Anti-cancer agents in medicinal chemistry 20 30019650
2015 A deletion at ADAMTS9-MAGI1 locus is associated with psoriatic arthritis risk. Annals of the rheumatic diseases 20 25990289
2011 Regulation of glutamate transporter GLT-1 by MAGI-1. Journal of neurochemistry 20 21426345
2021 Multifaceted Regulation of Akt by Diverse C-Terminal Post-translational Modifications. ACS chemical biology 19 34941261
2012 Biochemical and morphological characterization of MAGI-1 in neuronal tissue. Journal of neuroscience research 19 22605569
2025 Multimodal cell maps as a foundation for structural and functional genomics. Nature 18 40205054
2012 Regulation of interferon-β by MAGI-1 and its interaction with influenza A virus NS1 protein with ESEV PBM. PloS one 18 22911767
2010 The C. elegans MAGI-1 protein is a novel component of cell junctions that is required for junctional compartmentalization. Developmental biology 18 21034729
2019 Magi-1 scaffolds NaV1.8 and Slack KNa channels in dorsal root ganglion neurons regulating excitability and pain. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 17 30860870
2022 Molecular insights into the interaction of HPV-16 E6 variants against MAGI-1 PDZ1 domain. Scientific reports 16 35115618
2021 MAGI1 localizes to mature focal adhesion and modulates endothelial cell adhesion, migration and angiogenesis. Cell adhesion & migration 16 33823745
2020 MiR-486-5p-directed MAGI1/Rap1/RASSF5 signaling pathway contributes to hydroquinone-induced inhibition of erythroid differentiation in K562 cells. Toxicology in vitro : an international journal published in association with BIBRA 16 32198055
2008 Defining the minimal interacting regions of the tight junction protein MAGI-1 and HPV16 E6 oncoprotein for solution structure studies. Protein expression and purification 16 18467125
2021 Long Non-coding RNA TMEM220-AS1 Suppressed Hepatocellular Carcinoma by Regulating the miR-484/MAGI1 Axis as a Competing Endogenous RNA. Frontiers in cell and developmental biology 15 34422806
2020 MAGI1, a New Potential Tumor Suppressor Gene in Estrogen Receptor Positive Breast Cancer. Cancers 15 31963297
2019 Graphene oxide disrupts the protein-protein interaction between Neuroligin/NLG-1 and DLG-1 or MAGI-1 in nematode Caenorhabditis elegans. The Science of the total environment 15 31627046
2022 CLEC16A interacts with retromer and TRIM27, and its loss impairs endosomal trafficking and neurodevelopment. Human genetics 14 36538041
2020 MAGI1-IT1 stimulates proliferation in non-small cell lung cancer by upregulating AKT1 as a ceRNA. European review for medical and pharmacological sciences 14 32016970
2011 MAGI1 inhibits cancer cell migration and invasion of hepatocellular carcinoma via regulating PTEN. Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences 14 21685691
2024 SRC inhibition enables formation of a growth suppressive MAGI1-PP2A complex in isocitrate dehydrogenase-mutant cholangiocarcinoma. Science translational medicine 13 38748774
2019 MAGI1 mediates tumor metastasis through c-Myb/miR-520h/MAGI1 signaling pathway in renal cell carcinoma. Apoptosis : an international journal on programmed cell death 13 31352641
2019 Silencing Of MAGI1 Promotes The Proliferation And Inhibits Apoptosis Of Glioma Cells Via The Wnt/β-Catenin And PTEN/AKT Signaling Pathways. OncoTargets and therapy 13 32009799
2017 MAGI-1 expression is decreased in several types of human T-cell leukemia cell lines, including adult T-cell leukemia. International journal of hematology 12 29043551
2024 Lactate promoted cisplatin resistance in NSCLC by modulating the m6A modification-mediated FOXO3/MAGI1-IT1/miR-664b-3p/IL-6R axis. Neoplasia (New York, N.Y.) 11 38184887
2021 MAGI1 inhibits the AMOTL2/p38 stress pathway and prevents luminal breast tumorigenesis. Scientific reports 11 33707576
2015 The PDZ3 domain of the cellular scaffolding protein MAGI-1 interacts with the Coxsackievirus and adenovirus receptor (CAR). The international journal of biochemistry & cell biology 11 25622559
2020 p90RSK-MAGI1 Module Controls Endothelial Permeability by Post-translational Modifications of MAGI1 and Hippo Pathway. Frontiers in cardiovascular medicine 10 33304925
2017 The Association of a Genetic Variant in SCAF8-CNKSR3 with Diabetic Kidney Disease and Diabetic Retinopathy in a Chinese Population. Journal of diabetes research 10 28401168
2007 Cellular localization of MAGI-1 caspase cleavage products and their role in apoptosis. Biological chemistry 10 17976012
2019 MAGI1 Inhibits the Proliferation, Migration and Invasion of Glioma Cells. OncoTargets and therapy 9 31908493
2018 Structural Basis of Highly Specific Interaction between Nephrin and MAGI1 in Slit Diaphragm Assembly and Signaling. Journal of the American Society of Nephrology : JASN 9 30006415
2015 Disorder-to-order transition of MAGI-1 PDZ1 C-terminal extension upon peptide binding: thermodynamic and dynamic insights. Biochemistry 9 25590897
2013 MAGI-1 acts as a scaffolding molecule for NGF receptor-mediated signaling pathway. Biochimica et biophysica acta 7 23769981
2025 MAGI1 attenuates osteoarthritis by regulating osteoclast fusion in subchondral bone through the RhoA-ROCK1 signaling pathway. Journal of orthopaedic translation 6 40322041
2025 EndoMAP.v1 charts the structural landscape of human early endosome complexes. Nature 6 40437099
2021 MAGI-1 PDZ2 Domain Blockade Averts Adenovirus Infection via Enhanced Proteolysis of the Apical Coxsackievirus and Adenovirus Receptor. Journal of virology 6 33762416
2022 The magic of MAGI-1: A scaffolding protein with multi signalosomes and functional plasticity. Biology of the cell 5 35389514
2022 MAGI1 inhibits interferon signaling to promote influenza A infection. Frontiers in cardiovascular medicine 5 36082118
2024 A Potential Role for MAGI-1 in the Bi-Directional Relationship Between Major Depressive Disorder and Cardiovascular Disease. Current atherosclerosis reports 4 38958925
2017 Molecular cloning, alternative splicing and mRNA expression analysis of MAGI1 and its correlation with laying performance in geese. British poultry science 4 28067534
2024 MiR-205-5p-Mediated MAGI1 Inhibition Attenuates the Injury Induced by Diabetic Nephropathy. Pharmacology 3 38325349
2021 The Long Noncoding RNA MAGI1-IT1 Regulates the miR-302d-3p/IGF1 Axis to Control Gastric Cancer Cell Proliferation. Cancer management and research 3 33833579
2019 Intron polymorphisms of MAGI-1 and ACSF2 and effects on their expression in different goose breeds. Gene 3 30902784
2024 SAX-7/L1CAM acts with the adherens junction proteins MAGI-1, HMR-1/Cadherin, and AFD-1/Afadin to promote glial-mediated dendrite extension. bioRxiv : the preprint server for biology 2 38260503
2023 MAGI1 Prevents Senescence and Promotes the DNA Damage Response in ER+ Breast Cancer. Cells 2 37566008
2021 Corrigendum: p90RSK-MAGI1 Module Controls Endothelial Permeability by Post-translational Modifications of MAGI1 and Hippo Pathway. Frontiers in cardiovascular medicine 2 33681312
2025 Proximity-based proteomics (BioID) uncovers the Rho GTPase interactome in kidney podocytes. Frontiers in cell and developmental biology 1 41306285
2024 Regulation of tissue factor activity by interaction with the first PDZ domain of MAGI1. Thrombosis journal 1 38233821
2026 OGT-mediated O-GlcNAcylation of MAGI1 exacerbates high glucose-triggered inflammation and dedifferentiation of vascular smooth muscle cells by activating the PI3K/AKT pathway. Hereditas 0 41546072
2026 Conformational selection and linker-dependent specificity in the MAGI-1 WW tandem. International journal of biological macromolecules 0 41786191
2026 Human MAGI1 expression in endothelial cells protects from the development of localized and systemic scleroderma in mice. Arthritis research & therapy 0 41814414
2026 Adjacent domains drive the emergence of misfolded intermediates in the folding pathway of the PDZ4 from MAGI1. BBA advances 0 41852832
2025 Quantitative proteomic analysis unveils a critical role of VARS1 in hepatocellular carcinoma aggressiveness through the modulation of MAGI1 expression. Molecular cancer 0 39810176