Affinage

HROB

Homologous recombination OB-fold protein · UniProt Q8N3J3

Length
647 aa
Mass
69.8 kDa
Annotated
2026-04-28
13 papers in source corpus 7 papers cited in narrative 8 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HROB (C17orf53) is an OB-fold-containing nuclear protein that functions as a dedicated loader and activator of the MCM8-MCM9 helicase complex during homologous recombination and interstrand crosslink repair. It binds single-stranded DNA and RPA1, directly contacts both MCM8 and MCM9 subunits at the stable heterodimer interface, and stimulates MCM8-9 ATPase and helicase activities to drive recombination-associated DNA synthesis downstream of RAD51, acting in a pathway parallel to the HELQ helicase (PMID:31467087, PMID:32528060, PMID:38678026). HROB is expressed in a cell-cycle-dependent manner with peak levels in S phase, and its ssDNA- and RPA-binding activities are required for cell survival after crosslinking damage (PMID:32853826, PMID:39766854). Loss of HROB in mice causes meiotic arrest and infertility, phenocopying MCM8/MCM9 deficiency (PMID:31467087).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2019 High

    Identification of HROB as the MCM8-9 helicase loader resolved how this replicative helicase is recruited to DNA damage sites for recombination-associated DNA synthesis, establishing a T4 gp59-like loading paradigm in vertebrate HR.

    Evidence Knockout mouse and cell lines with HR assays, recruitment imaging at damage sites, genetic epistasis with HELQ

    PMID:31467087

    Open questions at the time
    • Mechanism by which HROB stimulates MCM8-9 activity was unknown
    • Whether HROB binds DNA or RPA directly was not addressed
    • Structural basis of the HROB–MCM8-9 interaction was undefined
  2. 2020 High

    Biochemical reconstitution showed HROB directly binds ssDNA and RPA1 and stimulates MCM8-9 helicase activity in vitro, establishing it as a bona fide activator — not merely a recruitment scaffold — and linking these activities to long-tract gene conversion and replication fork progression through interstrand crosslinks.

    Evidence In vitro helicase and ssDNA-binding assays, reciprocal Co-IP, ICL sensitivity in MCM8IP-deficient cells (two independent labs)

    PMID:32528060 PMID:32853826

    Open questions at the time
    • Whether HROB influences MCM8-9 hexamer assembly or acts post-assembly was unknown
    • Which subunit interface HROB contacts was not mapped
    • Relationship to the Fanconi anemia pathway (e.g., FANCD2) was not mechanistically resolved
  3. 2024 High

    Structure-function analysis revealed that MCM8-9 assembles as a hexamer from dimers with two alternating interfaces, and HROB binds specifically at the stable (obligate) heterodimer interface to promote DNA unwinding — likely by coordinating ATP hydrolysis with translocation — without affecting hexamer ring formation on ssDNA.

    Evidence Single-molecule imaging, in vitro ATPase assays, interface mutagenesis, molecular modeling

    PMID:38678026

    Open questions at the time
    • Atomic-resolution structure of the HROB–MCM8-9 complex is lacking
    • How HROB coordinates ATPase firing at the labile versus stable interface remains mechanistically unclear
    • In vivo validation of the proposed hexameric translocation model is absent
  4. 2024 Medium

    Cell-cycle profiling established that HROB expression peaks in S phase and is downregulated in quiescence, and FRET-based assays detected proximity to replication machinery components, suggesting a regulated connection between HROB and DNA replication beyond its known repair role.

    Evidence Flow cytometry FRET, cell-cycle fractionation, ectopic overexpression with replication readouts

    PMID:39766854

    Open questions at the time
    • Identity of the replication machinery components detected by FRET was not resolved to specific factors
    • The mechanism by which HROB overexpression inhibits replication is undefined
    • Whether the S-phase expression pattern reflects a replication function distinct from repair is untested
  5. 2025 Medium

    A reported interaction with ZC3HC1 linked HROB to cell-cycle regulation through CCNB1 ubiquitination and degradation, suggesting a non-canonical role in controlling the G2/M transition independent of its MCM8-9 loading function.

    Evidence Co-immunoprecipitation, phosphorylation and ubiquitination assays, overexpression/loss-of-function with proliferation readouts

    PMID:40654113

    Open questions at the time
    • Not yet independently replicated by a second laboratory
    • Whether this ZC3HC1 pathway operates in physiological contexts or only upon overexpression is unclear
    • Relationship between the MCM8-9 loading function and CCNB1 regulation has not been tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key open questions include the atomic structure of the HROB–MCM8-9 complex, the mechanism by which HROB coordinates ATPase-driven translocation, whether HROB has a direct role in unperturbed DNA replication, and whether its reported cell-cycle regulatory function via ZC3HC1/CCNB1 is physiologically relevant.
  • No high-resolution structure of the HROB–MCM8-9 complex exists
  • Physiological relevance of the ZC3HC1–CCNB1 axis awaits independent confirmation
  • Whether HROB functions at replication forks in the absence of damage is untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0003677 DNA binding 2
Localization
GO:0005634 nucleus 3
Pathway
R-HSA-73894 DNA Repair 6 R-HSA-1640170 Cell Cycle 2
Complex memberships
MCM8-MCM9-HROB

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 HROB (C17orf53) is an OB-fold-containing factor that recruits the MCM8-MCM9 helicase to sites of DNA damage to promote recombination-associated DNA synthesis downstream of RAD51, acting analogously to bacteriophage T4 gp59 helicase loader. Genetic epistasis, loss-of-function (knockout mouse and cell lines), recruitment assays at DNA damage sites, phenotypic readouts (HR defects, meiotic arrest, infertility) Genes & development High 31467087
2019 The HROB-MCM8-MCM9 pathway acts redundantly with the HELQ helicase; cells lacking both HROB and HELQ have severely impaired HR, placing them in two parallel routes for HR completion downstream of RAD51. Genetic epistasis (double-mutant HROB/HELQ cells), HR assays Genes & development High 31467087
2020 HROB (MCM8IP/C17orf53) directly binds single-stranded DNA and RPA1, directly associates with the MCM8-9 helicase complex, and stimulates the helicase activity of MCM8-9 in vitro; these interactions are required for HR-dependent DNA synthesis (long-tract gene conversion) and replication fork progression after crosslinking damage. Co-immunoprecipitation, in vitro helicase activity assay, ssDNA binding assay, loss-of-function (MCM8IP-deficient cells) with HR and fork progression readouts Nature communications High 32528060
2020 HROB (C17orf53) is a ssDNA- and RPA-binding protein; both activities are important for its function in interstrand crosslink (ICL) repair, and it works together with MCM8/9 to promote cell survival after ICL damage. Biochemical binding assays (ssDNA, RPA), genome-wide ATR-inhibitor fitness screen, multi-omics interaction mapping, ICL sensitivity assays in loss-of-function cells DNA repair High 32853826
2024 HROB makes transient contacts with both MCM8 and MCM9 subunits and binds the MCM8-9 heterodimer with highest affinity. MCM8-9 unwinds DNA as a hexamer assembled from dimers on DNA in the presence of ATP, with two alternating interfaces—one stable (obligate heterodimer, where HROB binds) and one labile (mediating hexamer assembly). HROB does not affect hexamer ring formation on ssDNA but promotes DNA unwinding downstream, likely by coordinating ATP hydrolysis with structural transitions during translocation; the ATPase site at the labile interface contributes disproportionately more to unwinding than that at the stable interface. Molecular modeling/biochemistry (interaction interface mapping), in vitro helicase assay, single-molecule experiments, ATPase assays, mutagenesis of interface residues Nature communications High 38678026
2024 HROB is a nuclear protein expressed in a cell-cycle-dependent manner with peak levels in S phase and downregulation in quiescence; FRET-based assays detected associations between HROB and proteins of the DNA replication machinery; ectopic overexpression of HROB nearly completely shuts down DNA replication. Flow cytometry FRET assay, cell-cycle fractionation/expression analysis, ectopic overexpression with DNA replication readout Genes Medium 39766854
2025 HROB interacts with ZC3HC1 and reduces its phosphorylation at Ser354; this de-phosphorylation facilitates K27-linked ubiquitination of CCNB1, promoting its proteasomal degradation and impairing G2-to-M phase transition, thereby suppressing cell proliferation. Co-immunoprecipitation, phosphorylation assays, ubiquitination assays, loss-of-function/overexpression with cell cycle and proliferation readouts Cancer science Medium 40654113
2025 HROB is required for MCM9 recruitment to ICL-induced nuclear foci; the BRCv motif and HROB are needed for MCM8/9 foci formation but not for FANCD2 binding, indicating HROB functions in the functional activation step of MCM8/9 rather than in physical association with FANCD2. Immunofluorescence, co-immunoprecipitation, knockout cell lines (MCM8, MCM9), epistasis analysis (γH2AX and survival assays in combined knockouts) bioRxivpreprint Medium bio_10.1101_2025.08.07.669127

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2019 Control of homologous recombination by the HROB-MCM8-MCM9 pathway. Genes & development 62 31467087
2020 MCM8IP activates the MCM8-9 helicase to promote DNA synthesis and homologous recombination upon DNA damage. Nature communications 44 32528060
2021 Meiotic genes in premature ovarian insufficiency: variants in HROB and REC8 as likely genetic causes. European journal of human genetics : EJHG 36 34707299
2020 C17orf53 is identified as a novel gene involved in inter-strand crosslink repair. DNA repair 24 32853826
2019 Ways to unwind with HROB, a new player in homologous recombination. Genes & development 11 31575675
2024 Mechanism of DNA unwinding by MCM8-9 in complex with HROB. Nature communications 10 38678026
2022 Pan-Cancer Analysis Identified Homologous Recombination Factor With OB-Fold (HROB) as a Potential Biomarker for Various Tumor Types. Frontiers in genetics 4 35903352
2024 HROB Is Implicated in DNA Replication. Genes 1 39766854
2023 Mechanism of DNA unwinding by hexameric MCM8-9 in complex with HROB. Research square 1 37461676
2023 Genetic analysis of novel pathogenic gene HROB in a family with primary ovarian insufficiency. Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences 1 38105698
2026 Biallelic Germline Inactivation of HROB Causes Primary Gonadal Insufficiency and is Potentially Associated with Colonic Polyposis Predisposition. American journal of medical genetics. Part A 0 41878782
2025 HROB Induces Lung Adenocarcinoma Progression via ZC3HC1-CCNB1 Axis Regulation and Cell Cycle Dysregulation. Cancer science 0 40654113
2023 Mechanism of DNA unwinding by hexameric MCM8-9 in complex with HROB. bioRxiv : the preprint server for biology 0 37398313