Affinage

HPS6

BLOC-2 complex member HPS6 · UniProt Q86YV9

Length
775 aa
Mass
83.0 kDa
Annotated
2026-06-10
11 papers in source corpus 4 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HPS6 is a subunit of the stable BLOC-2 complex (with HPS3 and HPS5) that functions in the biogenesis and maturation of lysosome-related organelles, existing as both a soluble pool and a peripheral membrane protein (PMID:15030569). Beyond its structural role in BLOC-2, HPS6 acts as a cargo adaptor that directly binds the dynactin p150Glued subunit to couple lysosomes to the dynein-dynactin retrograde motor, driving their centripetal transport to the perinuclear region; loss of HPS6 impairs lysosomal acidification, degradative capacity, and late endosome–lysosome fusion (PMID:25189619). In endothelial cells, HPS6 is required for Weibel-Palade body maturation and von Willebrand factor (VWF) tubulation, in part by binding the v-ATPase subunit ATP6V0D1 and delivering v-ATPase to the WPB limiting membrane to maintain the acidic luminal pH needed for VWF tubule formation (PMID:27889498, PMID:35252216). HPS6/BLOC-2 is not required for constitutive lysosomal enzyme secretion (PMID:15030569).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2004 High

    Established HPS6 as a defined biochemical entity by showing it is a stable subunit of the BLOC-2 complex, framing all later function within the biogenesis of lysosome-related organelles.

    Evidence Reciprocal Co-IP from HeLa extracts plus size-exclusion chromatography and density gradient fractionation

    PMID:15030569

    Open questions at the time
    • Stoichiometry and subunit architecture of BLOC-2 not resolved
    • Membrane-recruitment mechanism for the peripheral pool not defined
  2. 2004 Medium

    Tested whether BLOC-2 governs bulk lysosomal secretion and showed it does not, narrowing HPS6 function to organelle biogenesis rather than constitutive enzyme release.

    Evidence Beta-hexosaminidase secretion assay in HPS6-deficient fibroblasts (negative result)

    PMID:15030569

    Open questions at the time
    • A negative result does not exclude roles in regulated secretion
    • Single assay/single lab
  3. 2014 High

    Defined a direct mechanistic role by identifying HPS6 as a cargo adaptor linking lysosomes to the dynein-dynactin motor, explaining how lysosome positioning is coupled to maturation and acidification.

    Evidence Co-IP of HPS6 with p150Glued plus siRNA knockdown in HeLa cells with live-cell imaging, acidification, degradation, and fusion assays

    PMID:25189619

    Open questions at the time
    • Whether this adaptor activity requires intact BLOC-2 is unclear
    • Binding interface on p150Glued not mapped
    • Knockdown only partially blocks transport, implying redundancy
  4. 2016 Medium

    Extended HPS6 function to endothelial Weibel-Palade bodies, showing it is required for WPB maturation and VWF tubulation and thus regulated VWF release.

    Evidence HPS6-deficient mouse model; plasma VWF after DDAVP; EM and immunofluorescence of WPBs

    PMID:27889498

    Open questions at the time
    • Molecular mechanism behind the tubulation defect not defined in this study
    • Single lab
  5. 2022 Medium

    Provided the molecular basis for the WPB phenotype by showing HPS6 binds ATP6V0D1 and delivers v-ATPase to the WPB membrane to maintain acidic luminal pH required for VWF tubulation.

    Evidence Co-IP of HPS6 with ATP6V0D1 plus parallel siRNA phenocopy of HPS6 and ATP6V0D1 in HUVECs with WPB/VWF imaging

    PMID:35252216

    Open questions at the time
    • Direct demonstration of luminal pH change upon HPS6 loss not shown
    • Whether trafficking is BLOC-2-dependent or adaptor-dependent unresolved
    • Single lab, two methods

Open questions

Synthesis pass · forward-looking unresolved questions
  • How HPS6's BLOC-2 membership, dynein-dynactin adaptor activity, and v-ATPase trafficking roles are mechanistically integrated remains unresolved.
  • No structural model of HPS6 or its binding interfaces
  • Unclear whether cargo-adaptor and v-ATPase functions require intact BLOC-2
  • No defined recruitment signal for the peripheral membrane pool

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 1 GO:0060090 molecular adaptor activity 1
Localization
GO:0031410 cytoplasmic vesicle 2 GO:0005764 lysosome 1 GO:0005829 cytosol 1
Pathway
R-HSA-1852241 Organelle biogenesis and maintenance 2 R-HSA-5653656 Vesicle-mediated transport 1
Complex memberships
BLOC-2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2004 HPS6 is a subunit of the stable ~340 kDa BLOC-2 (Biogenesis of Lysosome-related Organelles Complex-2) protein complex, together with HPS3 and HPS5. The endogenous proteins co-immunoprecipitate from HeLa cell extracts and co-fractionate by size-exclusion chromatography and density gradient centrifugation. HPS6 (and BLOC-2) exists in both a soluble pool and as a peripheral membrane protein. Co-immunoprecipitation from HeLa cell extracts, size-exclusion chromatography, density gradient centrifugation Traffic (Copenhagen, Denmark) High 15030569
2004 Fibroblasts deficient in BLOC-2 subunit HPS6 display normal basal secretion of the lysosomal enzyme beta-hexosaminidase, indicating BLOC-2/HPS6 is not required for constitutive lysosomal enzyme secretion. Beta-hexosaminidase secretion assay in HPS6-deficient fibroblasts Traffic (Copenhagen, Denmark) Medium 15030569
2014 HPS6 directly interacts with the dynactin p150Glued subunit and acts as a cargo adaptor for the dynein-dynactin retrograde motor complex to mediate centripetal transport of lysosomes from the cell periphery to the perinuclear region. siRNA knockdown of HPS6 partially blocks centripetal lysosome movement, impairs lysosomal acidification and degradative capacity, delays lysosome-mediated protein degradation, and impairs fusion between late endosomes/multivesicular bodies and lysosomes. Co-immunoprecipitation (HPS6–p150Glued interaction), siRNA knockdown in HeLa cells with live-cell imaging of lysosome positioning, lysosomal degradation assays, acidification assays, and late endosome–lysosome fusion assays Journal of cell science High 25189619
2016 HPS6 deficiency in mouse endothelial cells impairs VWF tubulation within Weibel-Palade bodies (WPBs) and reduces regulated VWF release into plasma after desmopressin stimulation, indicating that the BLOC-2 subunit HPS6 is required for proper WPB maturation and VWF tubule formation. HPS6-deficient mouse model; plasma VWF measurement after DDAVP stimulation; electron microscopy and immunofluorescence of WPBs Journal of genetics and genomics = Yi chuan xue bao Medium 27889498
2022 HPS6 interacts with ATP6V0D1 (a subunit of v-ATPase) and is required for trafficking v-ATPase to the WPB limiting membrane. HPS6 knockdown in HUVECs causes misshapen WPBs, decreased WPB number, and impaired VWF tubulation—phenotypes that are recapitulated by ATP6V0D1 knockdown. The model is that HPS6-mediated v-ATPase delivery maintains the acidic luminal pH required for VWF tubule formation during WPB biogenesis. Co-immunoprecipitation (HPS6–ATP6V0D1 interaction), siRNA knockdown of HPS6 or ATP6V0D1 in HUVECs, electron/fluorescence microscopy of WPB morphology and VWF tubulation Frontiers in cell and developmental biology Medium 35252216

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2004 Characterization of BLOC-2, a complex containing the Hermansky-Pudlak syndrome proteins HPS3, HPS5 and HPS6. Traffic (Copenhagen, Denmark) 87 15030569
2014 HPS6 interacts with dynactin p150Glued to mediate retrograde trafficking and maturation of lysosomes. Journal of cell science 31 25189619
2016 BLOC-2 subunit HPS6 deficiency affects the tubulation and secretion of von Willebrand factor from mouse endothelial cells. Journal of genetics and genomics = Yi chuan xue bao 22 27889498
2022 HPS6 Regulates the Biogenesis of Weibel-Palade Body in Endothelial Cells Through Trafficking v-ATPase to Its Limiting Membrane. Frontiers in cell and developmental biology 14 35252216
2016 A novel two-nucleotide deletion in HPS6 affects mepacrine uptake and platelet dense granule secretion in a family with Hermansky-Pudlak syndrome. Pediatric blood & cancer 12 27917594
2016 Novel HPS6 mutations identified by whole-exome sequencing in two Japanese sisters with suspected ocular albinism. Journal of human genetics 11 27225848
2016 Identification of a novel mutation in HPS6 in a patient with hemophilia B and oculocutaneous albinism. Molecular genetics and metabolism 8 27641950
2018 Severe bleeding with subclinical oculocutaneous albinism in a patient with a novel HPS6 missense variant. American journal of medical genetics. Part A 7 30369044
2021 Hermansky-Pudlak syndrome: Five Chinese patients with novel variants in HPS1 and HPS6. European journal of medical genetics 3 33878481
2023 Novel Variants of HPS6 Cause Suspected Ocular Albinism: A Report of 2 Cases and the Profile of HPS6 Variants. Ophthalmic research 2 38091959
2021 Two Novel Homozygous HPS6 Mutations (Double Mutant) Identified by Whole-Exome Sequencing in a Saudi Consanguineous Family Suspected for Oculocutaneous Albinism. Life (Basel, Switzerland) 1 35054407

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