| 1992 |
A nuclear factor (HIF-1) is induced by hypoxia via de novo protein synthesis and binds to a site in the human erythropoietin gene enhancer required for transcriptional activation, establishing HIF-1 as a hypoxia-responsive transcriptional activator. |
DNase I footprinting, EMSA, reporter gene transfection, cycloheximide inhibition |
Molecular and cellular biology |
High |
1448077
|
| 1993 |
HIF-1 DNA-binding activity is induced by hypoxia in a wide variety of mammalian cell types (not only EPO-producing cells), establishing HIF-1 as a general mediator of transcriptional responses to hypoxia. |
EMSA, reporter gene transfection, mutagenesis across multiple cell lines |
Proceedings of the National Academy of Sciences of the United States of America |
High |
8387214
|
| 1994 |
HIF-1 directly binds to HRE sequences in the promoters of glycolytic enzyme genes (aldolase A, PGK1, enolase 1, LDHA, PFKL) and activates their transcription under hypoxia, linking HIF-1 to metabolic reprogramming. |
EMSA with affinity-purified HIF-1, reporter gene transfection with HRE sequences, RNA induction assays |
The Journal of biological chemistry |
High |
8089148
|
| 1995 |
HIF-1 is a heterodimer of two bHLH-PAS proteins: HIF-1α (most closely related to Drosophila Sim) and HIF-1β (ARNT). Both subunits are induced at 1% O₂ and decay upon reoxygenation. |
Protein purification, biochemical characterization, molecular cloning, RNA/protein level measurements under hypoxia |
Proceedings of the National Academy of Sciences of the United States of America |
High |
7539918
|
| 1995 |
HIF-1 purified as a heterodimer (~120 kDa HIF-1α and 91–94 kDa HIF-1β subunits); both subunits contact DNA directly; HIF-1 binds specifically to the wild-type EPO enhancer HIF-1 binding site. |
Affinity chromatography purification, UV cross-linking, glycerol gradient sedimentation, EMSA |
The Journal of biological chemistry |
High |
7836384
|
| 1996 |
HIF-1 directly activates VEGF transcription by binding to a hypoxia-response element (HRE) in the VEGF 5'-flanking region; dominant-negative HIF-1α abolishes hypoxic VEGF induction; HIF-1β (ARNT)-null cells fail to induce VEGF mRNA. |
Reporter gene assays, HRE mutagenesis, dominant-negative cotransfection, ARNT-null cell lines |
Molecular and cellular biology |
High |
8756616
|
| 1998 |
HIF-1α contains an oxygen-dependent degradation (ODD) domain (~200 aa in the central region) that controls its ubiquitin-proteasome degradation; deletion of the entire ODD yields a stable, functional HIF-1α under normoxia; ODD alone confers O₂-dependent instability when fused to a stable protein. |
Domain deletion mutagenesis, fusion-protein stability assays, heterodimerization and transactivation assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
9653127
|
| 1999 |
pVHL targets HIF-α subunits for oxygen-dependent proteolysis: VHL-defective cells constitutively stabilize HIF-α; re-expression of pVHL restores O₂-dependent instability; pVHL and HIF-α co-immunoprecipitate and the interaction is iron-dependent. |
VHL re-expression in VHL-null cells, co-immunoprecipitation, iron chelation experiments |
Nature |
High |
10353251
|
| 1999 |
Hsp90 interacts with the bHLH-PAS domain of HIF-1α under normoxia but not hypoxia; Hsp90 is not co-translocated to the nucleus with HIF-1α; Hsp90 activity is required for HIF-1 activation (inhibited by geldanamycin). |
EGFP-HIF-1α co-immunoprecipitation in COS-7 cells, domain mapping, geldanamycin pharmacological inhibition |
FEBS letters |
Medium |
10544245
|
| 2000 |
pVHL, through its β-domain, directly binds HIF-α and targets it for ubiquitination in an α-domain-dependent manner, providing the first evidence that pVHL functions analogously to an F-box protein recruiting substrates to the ubiquitination machinery. |
Direct binding assays, ubiquitination assays, domain mutagenesis |
Nature cell biology |
High |
10878807
|
| 2001 |
HIF-1α is targeted for VHL-mediated ubiquitylation through O₂-regulated hydroxylation of proline residue P564 by a HIF-α prolyl-hydroxylase (HIF-PH/PHD); the reaction requires dioxygen and Fe²⁺ as cofactors, identifying PHD as the direct cellular oxygen sensor. |
Peptide binding assays, site-directed mutagenesis (P564), mass spectrometry, in vitro hydroxylation with Fe²⁺/O₂ |
Science |
High |
11292861
|
| 2001 |
pVHL binds HIF-1α-derived peptide only when a conserved proline is hydroxylated; proline hydroxylation requires molecular O₂ and Fe²⁺, placing this modification as the key oxygen-sensing step in HIF-1α degradation. |
Peptide binding assay, site-directed mutagenesis, Fe²⁺/O₂ dependency experiments |
Science |
High |
11292862
|
| 2001 |
FIH-1 binds both HIF-1α and pVHL; FIH-1 inhibits HIF-1α transactivation function; VHL also acts as a transcriptional corepressor by recruiting histone deacetylases to inhibit HIF-1α transactivation independently of protein degradation. |
Yeast two-hybrid, co-immunoprecipitation, reporter assays, HDAC recruitment assays |
Genes & development |
High |
11641274
|
| 2001 |
Jab1 (COP9 signalosome subunit 5) directly interacts with HIF-1α, enhances HIF-1 transcriptional activity, increases HIF-1α protein stability, and interferes with p53–HIF-1α binding in a Jab1-dependent manner. |
Yeast two-hybrid, GST pull-down, co-immunoprecipitation, reporter assays |
The Journal of biological chemistry |
Medium |
11707426
|
| 2001 |
A conserved family of HIF prolyl-hydroxylase (HPH/PHD) enzymes hydroxylates the ODD proline of HIF-1α; forced HIF-1α expression under normoxia is attenuated by HPH co-expression; RNAi knockdown of HPH in Drosophila cells elevates a hypoxia-inducible gene under normoxia. |
Sequence homology, co-expression normoxic stabilization assay, Drosophila cell RNAi |
Science |
High |
11598268
|
| 2002 |
FIH-1 is an asparaginyl hydroxylase (Fe[II]-dependent, O₂-dependent dioxygenase) that hydroxylates a conserved asparagine in the C-terminal transactivation domain (CAD) of HIF-1α, blocking p300/CBP coactivator recruitment under normoxia. |
In vitro hydroxylation assay, mass spectrometry, Asn→Ala mutagenesis, p300 interaction assays |
Genes & development |
High |
12080085
|
| 2002 |
Hypoxic induction of the HIF CAD requires abrogation of asparagine hydroxylation, which in normoxia prevents p300 coactivator interaction; Asn→Ala substitution yields constitutive p300 interaction and strong transcriptional activity; full HIF induction requires abrogation of both Pro and Asn hydroxylation. |
Dioxygenase inhibitors, Asn mutagenesis, p300 interaction assays, transcriptional reporter assays |
Science |
High |
11823643
|
| 2002 |
mTOR signaling promotes HIF-1α stabilization and HIF-1 transactivation; rapamycin inhibits hypoxia- and CoCl₂-induced HIF-1α accumulation; the ODD domain is the critical target of the rapamycin-sensitive mTOR pathway for HIF-1α stabilization. |
Rapamycin pharmacological inhibition, wild-type/rapamycin-resistant mTOR transfection, GAL4-HIF-1α domain mapping, reporter assays |
Molecular and cellular biology |
High |
12242281
|
| 2002 |
Calcium/calmodulin signaling and ERK pathway activation contribute to HIF-1 transcriptional activity under hypoxia; ionomycin additively activates HIF-1 without affecting HIF-1α protein level; calmodulin dominant-negative or BAPTA (Ca²⁺ chelator) inhibits hypoxia-induced HIF-1 activation; PD98059 (MEK inhibitor) blocks HIF-1 activation, placing Ca²⁺/calmodulin upstream of ERK. |
Pharmacological inhibitors, dominant-negative calmodulin, intracellular Ca²⁺ chelation, reporter assays |
Annals of the New York Academy of Sciences |
Medium |
12485909
|
| 2003 |
PHD2 is the key oxygen sensor that sets low steady-state HIF-1α levels in normoxia; siRNA silencing of PHD2 alone is sufficient to stabilize and activate HIF-1α in all human cells tested under normoxia; silencing PHD1 or PHD3 has no effect on HIF-1α stability. |
siRNA knockdown of PHD1, PHD2, PHD3 individually in multiple human cell lines, HIF-1α stability and transcriptional activity assays |
The EMBO journal |
High |
12912907
|
| 2003 |
HIF-1α (not HIF-2α) is specifically required for glycolytic gene expression; HIF-2α can regulate a subset of broadly expressed hypoxia-inducible genes, demonstrating distinct non-redundant transcriptional programs for the two HIF-α paralogs. |
DNA microarray analysis of HIF-1α−/− cells, tetracycline-regulated stabilized HIF-1α or HIF-2α expression in HEK293 cells |
Molecular and cellular biology |
High |
14645546
|
| 2005 |
Succinate accumulation from SDH inhibition inhibits HIF-α prolyl hydroxylases in the cytosol, leading to HIF-1α stabilization and activation, thus linking mitochondrial TCA cycle dysfunction to HIF-1 oncogenic signaling. |
SDH inhibition/knockdown, prolyl hydroxylase activity assay with succinate, HIF-1α stability assays |
Cancer cell |
High |
15652751
|
| 2005 |
HIF-1α promotes genetic instability by transcriptionally repressing MSH2 and MSH6 (MutSα mismatch repair complex) through displacing Myc from Sp1 binding sites at their promoters, in a p53-dependent manner. |
Reporter assays, chromatin immunoprecipitation, siRNA knockdown, co-immunoprecipitation, clinical specimen correlation |
Molecular cell |
High |
15780936
|
| 2007 |
RACK1 competes with HSP90 for binding to the PAS-A domain of HIF-1α and promotes O₂/PHD/VHL-independent proteasomal degradation of HIF-1α by recruiting Elongin-C/B E3 ubiquitin ligase; RACK1 is required for HSP90 inhibitor-induced HIF-1α degradation. |
Co-immunoprecipitation, domain mapping, ubiquitination assays, RACK1 siRNA knockdown |
Cell cycle |
High |
17361105
|
| 2007 |
MgcRacGAP directly binds HIF-1α (verified in vitro and in vivo); MgcRacGAP overexpression inhibits HIF-1α transcriptional activity without affecting HIF-1α protein levels or subcellular localization; inhibition depends on the MgcRacGAP domain that interacts with HIF-1α. |
Yeast two-hybrid, in vitro pull-down, co-immunoprecipitation in mammalian cells, reporter assays, domain mutagenesis |
Cellular physiology and biochemistry |
Medium |
17982282
|
| 2007 |
HIF-1 regulates COX4 subunit composition in mammalian cells under hypoxia: HIF-1 activates transcription of COX4-2 and LON (a mitochondrial protease that degrades COX4-1), switching COX subunit composition to optimize respiratory efficiency at low O₂. |
ChIP, reporter assays, siRNA knockdown, oxygen consumption/ROS/ATP measurements, in vivo mouse model |
Cell |
High |
17418790
|
| 2008 |
HIF-1 directly binds the HRE in the TWIST proximal promoter to transcriptionally activate TWIST, thereby promoting epithelial-mesenchymal transition (EMT) and cancer metastasis; siRNA knockdown of TWIST reverses HIF-1α-driven EMT. |
ChIP, reporter assays, siRNA knockdown, EMT/invasion assays, clinical specimen analysis |
Nature cell biology |
High |
18297062
|
| 2008 |
HIF1 transcription factor is activated by mechanical wounding of keratinocytes (via PI3K pathway, independently of O₂), and directly regulates laminin-332 (laminα3 chain promoter) expression to promote keratinocyte migration and wound re-epithelialization. |
HIF-1α protein stabilization assays, PI3K inhibition, siRNA knockdown of HIF-1α, reporter assay of laminin α3 promoter, scratch wound assay |
Journal of cell science |
Medium |
18713836
|
| 2009 |
Acriflavine directly binds HIF-1α and HIF-2α and inhibits HIF-1 dimerization and transcriptional activity; this small molecule prevents tumor growth and vascularization in prostate cancer xenografts. |
Cell-based reporter screening, direct binding assay, dimerization assay, xenograft tumor models |
Proceedings of the National Academy of Sciences of the United States of America |
High |
19805192
|
| 2009 |
TNFα enhances HIF-1α protein expression (not mRNA) through IKKβ in breast cancer cells; IKKβ stable overexpression increases HIF-1α protein; IKKβ siRNA depletion or pharmacological inhibition (Bay 11-7082) reduces TNFα-induced HIF-1α; IKKβ-knockout MEFs show reduced VEGF expression. |
Western blot, siRNA/shRNA knockdown, IKKβ stable overexpression, pharmacological IKKβ inhibitor, IKKβ-null MEFs |
Biochemical and biophysical research communications |
Medium |
19766100
|
| 2011 |
PKM2 directly interacts with HIF-1α and functions as a transcriptional coactivator, enhancing HIF-1 target gene transactivation by promoting p300 recruitment to HREs; PHD3 hydroxylates PKM2 at P403/P408, enhancing PKM2–HIF-1α interaction and coactivator function; this creates a positive feedback loop driving glucose metabolism reprogramming in cancer cells. |
Co-immunoprecipitation, ChIP, mass spectrometry (hydroxylation), anti-hydroxyproline antibody, PHD3 knockdown, metabolic assays (glucose uptake, lactate, O₂ consumption) |
Cell |
High |
21620138
|
| 2011 |
HIF-1 directly activates RORγt transcription and forms a tertiary complex with RORγt and p300 at the IL-17 promoter to drive TH17 differentiation; concurrently HIF-1 binds Foxp3 and targets it for proteasomal degradation, attenuating Treg development; this occurs under both normoxic and hypoxic conditions. |
ChIP, reporter assays, co-immunoprecipitation, proteasome inhibition, HIF-1α conditional knockout mice (T cell-specific), EAE model |
Cell |
High |
21871655
|
| 2012 |
HIF1A directly binds HRE elements in the WASF3 (WAVE3) gene promoter (demonstrated by ChIP) and activates its transcription under hypoxia, promoting cancer cell motility and invasion; WASF3 knockdown abrogates the hypoxic migratory response. |
ChIP, luciferase reporter assays, siRNA knockdown of WASF3, scratch wound migration assay |
International journal of cancer |
Medium |
22581642
|
| 2015 |
Microbiota-derived butyrate drives O₂ consumption by intestinal epithelial cells, stabilizing HIF-1 and enhancing barrier function; antibiotic depletion of microbiota reduces colonic butyrate and HIF expression; butyrate effects on barrier function are lost in HIF-null cells, linking butyrate metabolism to HIF-1 stabilization. |
Antibiotic microbiota depletion, butyrate supplementation, germ-free mice, HIF-null cells, O₂ sensing dye assays |
Cell host & microbe |
High |
25865369
|
| 2016 |
TIP60 (KAT5) histone acetyltransferase complex is a conserved coactivator of HIF1: HIF1A interacts with and recruits TIP60 to chromatin; TIP60 is required for HIF1A-dependent chromatin modification and RNA Pol II activation at HREs but not for HIF1A binding to target genes. |
Co-immunoprecipitation, ChIP-seq, genetic knockdown in Drosophila and human colorectal cancer cells, RNA Pol II ChIP |
Cell reports |
High |
27320910
|
| 2017 |
KDM4A histone demethylase controls HIF-1α levels by removing the repressive H3K9me3 mark at the HIF1A locus; KDM4A depletion or inactivation leads to H3K9me3 accumulation at the HIF1A gene, reducing HIF-1α mRNA and protein, and decreasing hypoxic tumor-aggressive phenotypes. |
KDM4A siRNA knockdown, ChIP (H3K9me3 at HIF1A locus), RT-qPCR, HIF-1α protein/mRNA levels, invasion/migration assays |
Scientific reports |
Medium |
28894274
|
| 2018 |
HIF1 binds to the PKM gene by chromatin immunoprecipitation and mediates an isoform switch from PKM1 to PKM2 after myocardial infarction, with coordinated upregulation of associated splicing factors (hnRNPA1, hnRNPA2B1, Ptbp1). |
Chromatin immunoprecipitation (ChIP) of HIF1 at PKM locus, RNA-seq, qRT-PCR, pyruvate kinase activity assays |
Physiological genomics |
Medium |
29652636
|
| 2019 |
HIF-1α transcriptionally upregulates p53 by binding to five response elements in the p53 promoter under hypoxia; this HIF-1α-induced p53 is transcriptionally inactive but acts as a chaperone protein for HIF-1α, stabilizing its binding to downstream DNA response elements and increasing HIF-1 target gene synthesis. |
Reporter assays, ChIP, Co-immunoprecipitation, siRNA knockdown of HIF-1α, normoxia/hypoxia comparison |
Nucleic acids research |
Medium |
31538203
|
| 2019 |
HIF1A and NFAT5 coordinately boost antibacterial defense in macrophages under high-Na⁺ conditions: HIF1A-dependent autophagy induction and NFAT5-dependent autolysosomal targeting of intracellular E. coli are both required; this defense is independent of NOS2 and phagocyte oxidase. |
HIF1A siRNA/genetic knockdown, NFAT5 knockdown, autophagy flux assays, bacterial CFU assays, GSEA of transcriptome |
Autophagy |
Medium |
30982460
|
| 2020 |
HIF1a in oligodendrocyte progenitor cells (OPCs) activates non-canonical target genes (including Ascl2, Dlx3) through interaction with the OPC-specific transcription factor OLIG2; these non-canonical targets suppress Sox10 and block OPC differentiation into oligodendrocytes; MEK/ERK inhibition restores Sox10 expression without affecting canonical HIF1a activity. |
ChIP-seq in OPCs, OLIG2 co-IP, Ascl2/Dlx3 overexpression, Sox10 reporter assays, MEK/ERK inhibitor rescue, human oligocortical spheroids |
Cell stem cell |
High |
33091368
|
| 2021 |
HIF-1α in cardiac fibroblasts (CFs) suppresses mitochondrial ROS to prevent excessive post-ischemic CF proliferation and scarring; CF-specific Hif-1a deletion increases mitochondrial ROS, excessive CF proliferation, and contractile dysfunction after MI; the mitochondrial-targeted antioxidant MitoTEMPO rescues Hif-1a mutant phenotypes. |
CF-specific Hif-1a knockout mice, MI model, scRNA-seq, 3D cardiac microtissues, MitoParaquat/MitoTEMPO pharmacological manipulation, ROS measurements |
Cell stem cell |
High |
34762860
|
| 2021 |
m6A modification of Hif1a mRNA by FTO deficiency increases Hif1a mRNA translation via YTHDC2 recognition, elevating HIF1A protein; HIF1A then activates thermogenic gene transcription (Ppargc1a, Prdm16, Pparg), promoting white-to-beige adipocyte browning. |
FTO adipose-specific knockout mice, m6A-seq, RIP for YTHDC2, Hif1a KO rescue experiments, thermogenic gene expression, UCP1 assays |
EMBO reports |
High |
34569703
|
| 2022 |
PADI4 directly interacts with and citrullinates HIF-1α at R698; this citrullination blocks VHL binding and prevents HIF-1α ubiquitination and proteasomal degradation, stabilizing HIF-1α; the PADI4 antagonist dihydroergotamine mesylate suppresses tumor progression. |
Co-immunoprecipitation, in vitro citrullination assay, mass spectrometry identification of citrullinated R698, VHL binding assay, ubiquitination assay, PADI4 inhibitor treatment |
Nature communications |
High |
39227578
|
| 2022 |
Intermittent (rapid/cyclic) hypoxia increases HIF-1α protein via a distinct pathway involving KDM4A/KDM4B/KDM4C histone demethylases: intermittent hypoxia increases KDM4 activity, reduces H3K9me3 at the HIF1A locus, and increases HIF1A mRNA; this contrasts with chronic hypoxia, which decreases KDM4 activity and increases H3K9me3 globally and at the HIF1A locus. |
H3K9me3 ChIP at HIF1A locus, KDM4 activity assays, qRT-PCR, siRNA knockdown, comparison of intermittent vs chronic hypoxia protocols |
The Journal of biological chemistry |
Medium |
36174675
|
| 2022 |
STAT1 is a transcriptional suppressor of HIF1A: ATG7 deficiency upregulates STAT1 via an autophagy-independent pathway (through increased ZNF148 nuclear translocation), increased STAT1 binding to HIF1A promoter, and suppressed HIF1A expression, thereby impairing ischemia-induced angiogenesis. |
EC-specific Atg7 KO mice, ChIP (STAT1 at HIF1A promoter), co-immunoprecipitation (ATG7-ZNF148), HIF1A overexpression rescue, fludarabine STAT1 inhibition |
Autophagy |
High |
36300763
|
| 2023 |
USP51 deubiquitinase directly binds Elongin C (ELOC) and forms a complex with the VHL E3 ligase to deubiquitinate HIF1A, stabilizing it; HIF1A in turn transcriptionally upregulates USP51, forming a positive feedback loop; SENP1-mediated deSUMOylation of ELOC at K32 promotes USP51–ELOC interaction and HIF1A stabilization. |
Co-immunoprecipitation (USP51/VHL/ELOC complex), ubiquitination assay, ChIP (HIF1A binding to USP51 promoter), SUMOylation site mutagenesis (ELOC K32), in vitro deubiquitination assay |
Cell death and differentiation |
High |
37816999
|
| 2023 |
BAP1 deubiquitylase binds HIF-1α (through its C-terminal domain residues I675, F678, I679, L691), deubiquitylates it, and stabilizes HIF-1α during hypoxia; BAP1 mutations abolishing this interaction reduce nuclear HIF-1α in mesothelioma biopsies and primary cells. |
Co-immunoprecipitation, computational modeling of binding interface, BAP1 mutagenesis (I675A/F678A/I679A/L691A), siRNA BAP1 knockdown, HIF-1α protein level assays in hypoxia |
Proceedings of the National Academy of Sciences of the United States of America |
High |
36656861
|