Affinage

HDGFL1

Hepatoma-derived growth factor-like protein 1 · UniProt Q5TGJ6

Round 2 corrected
Length
251 aa
Mass
27.2 kDa
Annotated
2026-04-28
19 papers in source corpus 1 papers cited in narrative 1 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HDGFL1 (also known as HRP-1) is a testis-specific member of the HDGF family whose expression is restricted to the nuclei of male germ cells from the pachytene spermatocyte through the round spermatid stage, implicating it in nuclear functions during meiotic and early post-meiotic spermatogenesis (PMID:10462493). Its absence in ovarian tissue, in cryptorchid testes, and in certain azoospermic mutant mouse strains links it specifically to active male germ-cell differentiation rather than somatic testicular function (PMID:10462493). The precise molecular activity of HDGFL1 within the germ-cell nucleus remains uncharacterized.

Mechanistic history

Synthesis pass · year-by-year structured walk · 1 step
  1. 1999 Medium

    The first characterization of HDGFL1 established that, unlike the broadly expressed HDGF, this paralog is confined to male germ-cell nuclei during meiosis and early spermiogenesis, answering whether HDGF-family members have tissue-restricted roles.

    Evidence Northern blot and immunohistochemistry on normal, cryptorchid, and azoospermic mutant mouse testes

    PMID:10462493

    Open questions at the time
    • Single-study observation not independently replicated
    • No loss-of-function experiment to determine whether HDGFL1 is required for spermatogenesis
    • Molecular activity (e.g., DNA/chromatin binding, growth factor signaling) not investigated

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular function of HDGFL1 in germ-cell nuclei — whether it acts as a chromatin regulator, transcription factor, or growth factor — and whether its loss causes male infertility remain entirely open questions.
  • No knockout or knockdown phenotype reported
  • No binding partners or target genes identified
  • No structural or biochemical characterization of the PWWP/HATH domain in HDGFL1

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-1474165 Reproduction 1

Evidence

Reading pass · 1 per-paper finding extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 HDGFL1 (HRP-1, hepatoma-derived growth factor-related protein 1), a member of the HDGF gene family, is expressed in a testis-specific manner in mice. Its mRNA and protein are detected exclusively in the nuclei of germ cells (not somatic cells), with expression from pachytene spermatocyte through round spermatid stages. HRP-1 expression is absent in the ovary and is not detected in the testes of cryptorchid mice or certain azoospermic mutant mouse strains, indicating a role specifically in the meiotic/post-meiotic phases of spermatogenesis. Northern blot analysis and immunohistochemistry on normal and azoospermic mouse testes Biochemical and biophysical research communications Medium 10462493

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2019 Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3. Nature chemical biology 75 31285596
2005 Effects of di-(2-ethylhexyl)-phthalate (DEHP) and its metabolites on fatty acid homeostasis regulating proteins in rat placental HRP-1 trophoblast cells. Toxicological sciences : an official journal of the Society of Toxicology 68 15647598
2006 Expression and transport activity of breast cancer resistance protein (Bcrp/Abcg2) in dually perfused rat placenta and HRP-1 cell line. The Journal of pharmacology and experimental therapeutics 65 16809480
2005 Effects of di-(2-ethylhexyl)-phthalate and its metabolites on the lipid profiling in rat HRP-1 trophoblast cells. Archives of toxicology 41 16328440
2022 Structure-Based Discovery of a Series of NSD2-PWWP1 Inhibitors. Journal of medicinal chemistry 22 35704853
2023 Sequential genome-wide CRISPR-Cas9 screens identify genes regulating cell-surface expression of tetraspanins. Cell reports 20 36724073
2014 Genome-wide admixture and association study of serum iron, ferritin, transferrin saturation and total iron binding capacity in African Americans. Human molecular genetics 20 25224454
1997 Permeability and metabolic properties of a trophoblast cell line (HRP-1) derived from normal rat placenta. Experimental cell research 18 9223380
2023 TRIM21 ameliorates hepatic glucose and lipid metabolic disorders in type 2 diabetes mellitus by ubiquitination of PEPCK1 and FASN. Cellular and molecular life sciences : CMLS 17 37249651
1999 Hepatoma-derived growth factor-related protein (HRP)-1 gene in spermatogenesis in mice. Biochemical and biophysical research communications 16 10462493
2024 Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches. Journal of medicinal chemistry 10 38748070
2015 Genome-wide association study of parity in Bangladeshi women. PloS one 8 25742292
2010 Mild intellectual disability associated with a progeny of father-daughter incest: genetic and environmental considerations. Journal of child sexual abuse 3 20509080
2025 Structural and Molecular Insight into the PWWP1 Domain of NSD2 from the Discovery of Novel Binders Via DNA-Encoded Library Screening. ACS medicinal chemistry letters 1 40959233
2026 Fluorogenic Ligand Enables Identification of NSD3-Overexpressed Tumors by Targeting the PWWP1 Domain of NSD3. Analytical chemistry 0 41820229
2025 Fragment-Based Screening of NSD2-PWWP1 Identifies Novel Covalent Allosteric Ligands That Diminish Methyllysine and DNA Binding Abilities of NSD2. Journal of medicinal chemistry 0 41264880