Affinage

GYS2

Glycogen [starch] synthase, liver · UniProt P54840

Length
703 aa
Mass
81.0 kDa
Annotated
2026-06-10
19 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GYS2 is the hepatic glycogen synthase that catalyzes glycogen synthesis and serves as a transcriptionally controlled node coupling feeding state and the circadian clock to glycogen storage (PMID:20430893, PMID:24049741). Its transcription is directly driven by the core clock machinery: CLOCK binds two tandem E-box elements in the Gys2 promoter to impose circadian rhythmicity on hepatic glycogen synthesis (PMID:20430893), BMAL1 binds Gys2 promoter and intron regions with hepatocyte-specific Bmal1 loss abolishing this rhythmic expression (PMID:38183795), and PER2 associates with the Gys2 locus to drive the feeding-induced transcriptional response, such that Per2-deficient livers show reduced glycogen synthase during refeeding (PMID:24049741). Beyond classical GSK3-dependent acute control, insulin upregulates GYS2 transcription—shown in human endometrial epithelial cells where insulin both increases GYS2 mRNA and inactivates GSK3α/β to raise intracellular glycogen (PMID:29726999). GYS2 protein additionally functions in a tumor-suppressive p53 circuit in liver: it competitively binds MDM2 to block MDM2-mediated p53 ubiquitination and enhances p300-induced acetylation of p53 at K373/382, while p53 reciprocally represses GYS2 transcription via an HBx/HDAC1 complex, forming a negative feedback loop, and GYS2 overexpression suppresses hepatoma cell proliferation and migration with elevated p53 (PMID:30584071, PMID:38183795).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2010 High

    Established that Gys2 transcription is under direct circadian clock control, explaining the daily rhythm of hepatic glycogen synthesis rather than treating GYS2 as a purely metabolically regulated enzyme.

    Evidence Reporter assays, in vivo liver ChIP for CLOCK at tandem E-boxes, and Clock mutant mice

    PMID:20430893

    Open questions at the time
    • Does not resolve how clock-driven transcription integrates with acute post-translational control of GYS2 activity
    • Did not test BMAL1 contribution directly
  2. 2013 High

    Showed that the clock component PER2 is required for the feeding-induced transcriptional response of Gys2, linking nutrient timing to glycogen storage capacity.

    Evidence ChIP at Gys2 genomic regions, Per2(Brdm1) knockout mice, and protein/activity readouts across fasting-refeeding

    PMID:24049741

    Open questions at the time
    • Mechanism by which PER2 promotes rather than represses transcription at this locus not defined
    • Coordination with CLOCK/BMAL1 binding not directly mapped
  3. 2013 Low

    Provided evolutionary evidence that GYS2 coding sequence was a target of adaptive selection in fruit bats, implicating it in dietary carbohydrate adaptation.

    Evidence Comparative coding-region sequencing across bat species with phylogenetic selection tests

    PMID:24258790

    Open questions at the time
    • Computational only; no functional validation of Q72H, K371Q, or E666D substitutions on enzyme activity
    • No mechanistic link to glycogen synthesis rate established
  4. 2018 Medium

    Defined a non-enzymatic role for GYS2 protein in stabilizing p53, expanding GYS2 from a metabolic enzyme to a tumor-suppressive signaling component in hepatocellular carcinoma.

    Evidence Co-IP, ubiquitination and acetylation assays, and overexpression/knockdown in vitro and in vivo tumor models

    PMID:30584071

    Open questions at the time
    • Single-lab biochemistry without reciprocal independent confirmation of the MDM2-competition mechanism
    • Structural basis of GYS2-MDM2 binding unresolved
    • Whether catalytic activity is required for p53 stabilization untested
  5. 2018 Medium

    Demonstrated that insulin upregulates GYS2 transcriptionally in addition to relieving GSK3 inhibition, identifying insulin (not progesterone) as the regulator of glycogen synthesis in endometrial epithelium.

    Evidence Primary human endometrial epithelial cells with insulin/MPA treatment, glycogen quantification, GSK3 phosphorylation, and GYS2 mRNA measurement

    PMID:29726999

    Open questions at the time
    • Transcription factor mediating insulin-induced GYS2 expression not identified
    • Generalizability beyond endometrial tissue not tested
  6. 2023 Medium

    Confirmed BMAL1 as a direct positive regulator of rhythmic Gys2 expression and connected GYS2 to growth suppression, tying the circadian and p53 axes together.

    Evidence ChIP-seq, hepatocyte-specific Bmal1 knockout with 24-h qPCR time course, and proliferation/migration assays in HepG2 cells

    PMID:38183795

    Open questions at the time
    • Causal link between clock-driven GYS2 levels and p53-dependent tumor suppression not directly demonstrated
    • Whether reduced rhythmicity alters glycogen flux in vivo not quantified

Open questions

Synthesis pass · forward-looking unresolved questions
  • How GYS2's enzymatic glycogen-synthesis function mechanistically intersects with its p53-stabilizing role, and the transcription factors mediating insulin's effect, remain undefined.
  • No structural model of GYS2-MDM2 interaction
  • Insulin-responsive transcriptional pathway for GYS2 unidentified
  • Integration of circadian, insulin, and p53 inputs on a single GYS2 pool not reconstituted

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 3
Pathway
R-HSA-1430728 Metabolism 3 R-HSA-9909396 Circadian clock 3
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 CLOCK protein drives transcriptional activation of Gys2 via two tandemly located E-box elements in the Gys2 promoter, and CLOCK binds these E-box elements in liver chromatin in vivo, thereby regulating circadian rhythms of hepatic glycogen synthesis. Transient reporter assay, chromatin immunoprecipitation (ChIP) of liver tissue, real-time reporter assay, Clock mutant mouse model The Journal of biological chemistry High 20430893
2013 PER2 promotes hepatic glycogen storage by interacting with genomic regions of Gys2 (as well as PTG and GL) to induce their expression; Per2-deficient mice show reduced hepatic glycogen synthase protein levels during refeeding, indicating PER2 is required for the feeding-induced transcriptional response of Gys2. Chromatin immunoprecipitation (ChIP), Per2(Brdm1) knockout mouse model, protein quantification during controlled fasting/refeeding, glycogen phosphorylase activity assay Molecular metabolism High 24049741
2018 GYS2 protein competitively binds MDM2 to prevent MDM2-mediated ubiquitination and degradation of p53, and also enhances p300-induced acetylation of p53 at K373/382; in turn, p53 represses GYS2 transcription via the HBx/HDAC1 complex, forming a negative feedback loop. Co-immunoprecipitation, overexpression and knockdown in vitro and in vivo tumor models, ubiquitination assay, acetylation assay Cancer research Medium 30584071
2018 In human endometrial epithelial cells, insulin increases GYS2 gene expression 3.7-fold and inactivates GSK3α/β (relieving inhibition of glycogen synthase), resulting in a 4.4-fold increase in intracellular glycogen; progesterone does not alter glycogen content, establishing insulin—not progesterone—as the direct regulator of GYS2-dependent glycogen synthesis in this tissue. Primary human endometrial epithelial cell culture, insulin/MPA treatment, intracellular glycogen quantification, enzyme activity/phosphorylation assays, gene expression analysis The Journal of clinical endocrinology and metabolism Medium 29726999
2023 BMAL1 directly binds to promoter and intron regions of Gys2 in mouse liver (validated by ChIP-seq), and hepatocyte-specific Bmal1 knockout abolishes the circadian rhythmic expression of Gys2 and reduces its overall expression level; overexpression of GYS2 in HepG2 cells inhibits proliferation and migration with elevated p53 expression. ChIP-seq (public datasets), L-Bmal1-/- mouse model, real-time quantitative PCR over 24-h time course, CCK8 proliferation assay, wound healing assay Biochemical and biophysical research communications Medium 38183795
2013 Comparative sequencing of the Gys2 coding region across Old World and New World fruit bat species identified three parallel amino acid substitutions (Q72H, K371Q, E666D); natural selection drove two of these substitutions (Q72H and E666D), indicating that GYS2 underwent parallel adaptive evolution in frugivorous bats related to carbohydrate metabolism. Coding-region sequencing of Gys2 across bat species, phylogenetic tests for positive/parallel selection Journal of molecular evolution Low 24258790

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 CLOCK regulates circadian rhythms of hepatic glycogen synthesis through transcriptional activation of Gys2. The Journal of biological chemistry 125 20430893
2013 PER2 promotes glucose storage to liver glycogen during feeding and acute fasting by inducing Gys2 PTG and G L expression. Molecular metabolism 62 24049741
2018 A GYS2/p53 Negative Feedback Loop Restricts Tumor Growth in HBV-Related Hepatocellular Carcinoma. Cancer research 53 30584071
2012 Genome-wide association study identifies GYS2 as a novel genetic factor for polycystic ovary syndrome through obesity-related condition. Journal of human genetics 43 22951595
2018 Insulin Regulates Glycogen Synthesis in Human Endometrial Glands Through Increased GYS2. The Journal of clinical endocrinology and metabolism 21 29726999
2020 Hepatic glycogen synthase (GYS2) deficiency: seven novel patients and seven novel variants. JIMD reports 12 32395408
2012 Mutational analysis of the GYS2 gene in patients diagnosed with ketotic hypoglycaemia. Journal of pediatric endocrinology & metabolism : JPEM 11 23426827
2023 Identification of BMAL1-Regulated circadian genes in mouse liver and their potential association with hepatocellular carcinoma: Gys2 and Upp2 as promising candidates. Biochemical and biophysical research communications 10 38183795
2021 Lupin protein isolate improves insulin sensitivity and steatohepatitis in vivo and modulates the expression of the Fasn, Gys2, and Gsk3b genes. Food science & nutrition 10 34026071
2020 A patient with glycogen storage disease type 0 and a novel sequence variant in GYS2: a case report and literature review. The Journal of international medical research 10 32779500
2015 Pediatric patient with hyperketotic hypoglycemia diagnosed with glycogen synthase deficiency due to the novel homozygous mutation in GYS2. Molecular genetics and metabolism reports 10 26937415
2021 Novel GYS2 mutations in a Japanese patient with glycogen storage disease type 0a. Molecular genetics and metabolism reports 8 33489759
2018 Glycogen storage disease type 0 due to a novel frameshift mutation in glycogen synthase 2 (GYS2) gene in a child presenting with fasting hypoglycemia and postprandial hyperglycemia. The Turkish journal of pediatrics 5 30968641
2013 The glycogen synthase 2 gene (Gys2) displays parallel evolution between Old World and New World fruit bats. Journal of molecular evolution 4 24258790
2020 Multi-scale modeling identifies the role of p53-Gys2 negative feedback loop in cellular homeostasis. Mathematical biosciences and engineering : MBE 2 32987529
2017 Group 3 medulloblastoma in a patient with a GYS2 germline mutation and glycogen storage disease 0a. Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery 2 29167993
2024 Single nucleotide polymorphisms of GYS2 gene and its association with milk production traits of dairy cows. Animal biotechnology 1 39629739
2023 Whole-Exome sequencing identifies GYS2 biallelic variants in individuals with suspected epilepsy. Seizure 1 37574425
2021 [Glycogen storage syndrome type 0 caused by GYS2 gene variation and phenotypic differences between two siblings]. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 0 34729754

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