Affinage

GORAB

RAB6-interacting golgin · UniProt Q5T7V8

Length
369 aa
Mass
42.3 kDa
Annotated
2026-06-10
100 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GORAB is a trans-Golgi golgin that scaffolds COPI-mediated retrograde transport and is required for normal protein glycosylation, with its loss causing the progeroid skin-and-bone disorder gerodermia osteodysplastica (PMID:18997784, PMID:30631079). It associates loosely with trans-Golgi membranes—being rapidly displaced by Brefeldin A—through an internal IGRAB domain that binds both the small GTPase RAB6 and the GTP-bound active form of ARF5 (PMID:18997784, PMID:26000619). At the trans-Golgi, GORAB assembles into stable membrane domains that, via interaction with the COPI-binding protein SCYL1, recruit COPI to enable retrieval of trans-Golgi glycosylation enzymes; loss of GORAB impairs this retrieval and produces deficient glycosylation of secretory cargo (PMID:30631079). Pathogenic missense mutations map to the IGRAB domain and disrupt this machinery: p.Ala220Pro mislocalizes GORAB to the cytoplasm and abolishes both RAB6 and ARF5 binding, while p.Ser175Phe displaces it to vesicular structures and selectively impairs ARF5 binding (PMID:26000619), and other mutations perturb SCYL1 binding or domain assembly (PMID:30631079). In vivo, conditional deletion of Gorab in long bones recapitulates skeletal aging, with reduced cortical bone, delayed mineralization, and diminished whole-bone strength, establishing GORAB as required for bone integrity (PMID:29108851). Separately, GORAB has been reported to act in a nuclear MDM2/p53 axis—stabilizing p53 by suppressing MDM2-mediated ubiquitination (PMID:20849854) and inhibiting neurite outgrowth and axonal regeneration by inducing Mdm2 transcription to lower p53 levels (PMID:23051735)—a role less integrated with its Golgi function.

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2008 High

    Established GORAB's identity and disease relevance by showing it is a Golgi-localized RAB6-binding golgin whose loss causes gerodermia osteodysplastica, defining the secretory pathway as the disease mechanism.

    Evidence Patient mutation identification with subcellular localization and protein interaction assays

    PMID:18997784

    Open questions at the time
    • Did not define the membrane-targeting domain or the molecular consequence of RAB6 binding
    • No link yet to a downstream transport step or cargo
  2. 2009 Low

    Confirmed loss-of-function as the pathogenic mechanism by showing a missense mutation produces a null-equivalent phenotype in gerodermia osteodysplastica families.

    Evidence Homozygosity mapping and linkage analysis in Saudi families

    PMID:19681135

    Open questions at the time
    • Genetic mapping only, no direct functional assay of the missense allele
    • Does not extend the molecular model
  3. 2010 Medium

    Proposed a nuclear function by showing GORAB overexpression stabilizes p53 through suppression of MDM2-specific ubiquitination, coupling it to growth arrest and apoptosis.

    Evidence Ubiquitination assays with MDM2 specificity control, transcriptional reporters, proliferation/apoptosis/tumorigenicity assays

    PMID:20849854

    Open questions at the time
    • Relies on overexpression; endogenous relevance unestablished
    • Mechanism of MDM2 inhibition not resolved
    • Not reconciled with the Golgi localization established earlier
  4. 2012 Medium

    Extended the p53 connection to neuronal biology by showing GORAB represses neurite outgrowth and axonal regeneration via transcriptional induction of Mdm2 and consequent p53 degradation.

    Evidence Overexpression/shRNA in PC12 cells and primary neurons, neurite assays, Mdm2 promoter assay, siRNA epistasis, in vivo regeneration model

    PMID:23051735

    Open questions at the time
    • Direction of p53 effect (degradation here vs. stabilization in 2010) not reconciled
    • Transcriptional activator role not biochemically defined
    • Mdm2 siRNA rescue only partial
  5. 2015 High

    Defined the membrane-targeting mechanism by mapping an IGRAB domain that binds RAB6 and active ARF5, and tied two disease mutations to specific binding/localization defects.

    Evidence Yeast two-hybrid, fluorescence microscopy, Brefeldin A displacement, site-directed mutagenesis of pathogenic mutations

    PMID:26000619

    Open questions at the time
    • Did not establish the downstream transport step served by RAB6/ARF5 binding
    • Functional role of ARF5 vs RAB6 binding distinct contributions unresolved
  6. 2017 Medium

    Demonstrated a tissue-level in vivo requirement by showing conditional Gorab deletion in long bones recapitulates skeletal aging with reduced mineralization and bone strength.

    Evidence Cre-lox conditional knockout with microCT, FTIR, strain gauge, finite element analysis, three-point bending

    PMID:29108851

    Open questions at the time
    • Molecular pathway connecting Golgi/glycosylation defect to bone phenotype not resolved
    • Cell-type-specific mechanism in osteoblasts not defined
  7. 2019 High

    Provided the unifying molecular function: GORAB forms stable trans-Golgi domains that recruit COPI via SCYL1 to enable retrieval of glycosylation enzymes, explaining the glycosylation defect underlying disease.

    Evidence Co-immunoprecipitation, GORAB knockout/knockdown, COPI recruitment and glycosylation assays, pathogenic mutation analysis

    PMID:30631079

    Open questions at the time
    • Specific enzymes whose retrieval depends on GORAB not exhaustively identified
    • Structural basis of domain assembly unresolved
    • Relationship between Golgi function and the MDM2/p53 axis not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the trans-Golgi COPI-scaffolding function relates mechanistically to the reported nuclear MDM2/p53 activity, and how either pathway causes the skin and bone pathology, remains unresolved.
  • No experiment links Golgi/glycosylation function to p53 regulation
  • Causal chain from glycosylation defect to gerodermia osteodysplastica phenotype not defined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0060090 molecular adaptor activity 1 GO:0140110 transcription regulator activity 1
Localization
GO:0005794 Golgi apparatus 3
Pathway
R-HSA-392499 Metabolism of proteins 1 R-HSA-5653656 Vesicle-mediated transport 1

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2008 GORAB (SCYL1BP1) localizes to the Golgi apparatus and interacts with the small GTPase RAB6, identifying it as a golgin. Loss-of-function mutations in SCYL1BP1 cause gerodermia osteodysplastica, a disorder affecting skin and bone, establishing the Golgi/secretory pathway as the disease mechanism. Mutation identification in patients, subcellular localization experiments, protein-protein interaction assays Nature genetics High 18997784
2015 GORAB localizes preferentially to trans-Golgi markers and is rapidly displaced upon Brefeldin A treatment, indicating a loose membrane association. An internal Golgi-targeting RAB6 and ARF5 binding (IGRAB) domain mediates binding to both RAB6 and ARF5 (in its active GTP-bound form). Two pathogenic missense mutations (p.Ala220Pro and p.Ser175Phe) fall within the IGRAB domain: p.Ala220Pro causes cytoplasmic mislocalization and abolishes both RAB6 and ARF5 binding, while p.Ser175Phe displaces GORAB to vesicular structures and selectively impairs ARF5 binding. Yeast two-hybrid screening, subcellular localization by fluorescence microscopy, Brefeldin A treatment, site-directed mutagenesis of disease-associated missense mutations The Journal of investigative dermatology High 26000619
2019 GORAB acts as a COPI scaffolding factor at the trans-Golgi. It forms stable domains at the trans-Golgi that, via interactions with the COPI-binding protein SCYL1, promote COPI recruitment to these domains. Loss of GORAB impairs COPI-mediated retrieval of trans-Golgi enzymes, resulting in deficient glycosylation of secretory cargo proteins. Pathogenic GORAB mutations perturb either SCYL1 binding or GORAB assembly into domains. Co-immunoprecipitation, GORAB knockout/knockdown, COPI recruitment assays, glycosylation assays of secretory cargo, analysis of pathogenic missense mutations Nature communications High 30631079
2012 SCYL1BP1 (GORAB) inhibits nerve growth factor-mediated neurite outgrowth in PC12 cells and impairs morphogenesis of primary cortical neurons by reducing p53 protein levels in a manner dependent on its transcriptional activator domain. SCYL1BP1 directly induces Mdm2 transcription, leading to Mdm2-mediated degradation of p53; siRNA knockdown of Mdm2 partially rescues the neurite outgrowth defects. In vivo, SCYL1BP1 suppresses axonal regeneration, while shRNA-mediated knockdown enhances it. Overexpression and shRNA knockdown in PC12 cells and primary neurons, neurite outgrowth assay, p53 protein measurement, Mdm2 promoter transcription assay, siRNA epistasis, in vivo axonal regeneration model Molecular biology of the cell Medium 23051735
2010 Overexpression of SCYL1BP1 (GORAB) stabilizes p53 protein by suppressing MDM2-mediated ubiquitination of p53. This effect is specific to MDM2, as SCYL1BP1 does not alter p53 ubiquitination by HPV E6. Elevated SCYL1BP1 leads to increased p21 and GADD45 transcription, reduced proliferation, increased apoptosis, and inhibition of tumorigenicity. Ubiquitination assay, p53 protein level measurement, transcriptional reporter assays, cell proliferation and apoptosis assays, tumorigenicity assay FEBS letters Medium 20849854
2009 Mutations in SCYL1BP1 (GORAB) identified in Saudi families with gerodermia osteodysplastica include a missense mutation that produces a phenotype indistinguishable from null mutations, supporting that loss of GORAB golgin function is the pathogenic mechanism. Homozygosity mapping, linkage analysis, mutation identification American journal of medical genetics. Part A Low 19681135
2017 Conditional deletion of Gorab in long bones (GorabPrx1 mice) results in decreased cortical bone area, thickness, and moments of inertia, delayed mineralization (reduced mineral/matrix ratio, increased acid phosphate content), higher tissue-level strains, and reduced whole-bone strength and stiffness, recapitulating features of skeletal aging and establishing a functional role for GORAB in bone integrity in vivo. Conditional gene knockout (Cre-lox), microCT imaging, FTIR imaging, in vivo strain gauge, finite element analysis, three-point bending tests Journal of biomechanics Medium 29108851

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2004 The Gene Ontology (GO) database and informatics resource. Nucleic acids research 3212 14681407
2006 The Gene Ontology (GO) project in 2006. Nucleic acids research 870 16381878
2014 Small cell lung cancer: where do we go from here? Cancer 506 25336398
2008 HIF-1 regulation: not so easy come, easy go. Trends in biochemical sciences 279 18809331
2002 Adipogenesis and aging: does aging make fat go MAD? Experimental gerontology 274 12175476
2008 Gephyrin: where do we stand, where do we go? Trends in neurosciences 252 18403029
2016 Neutrophil Extracellular Traps Go Viral. Frontiers in immunology 215 27698656
2019 Antibiotic Discovery: Where Have We Come from, Where Do We Go? Antibiotics (Basel, Switzerland) 203 31022923
2002 Yeast go the whole HOG for the hyperosmotic response. Trends in genetics : TIG 199 12142009
2016 Retrograde signaling: Organelles go networking. Biochimica et biophysica acta 167 26997501
2004 To go or not to go: Migration of human mesenchymal progenitor cells stimulated by isoforms of PDGF. Journal of cellular biochemistry 147 15389881
1990 Where does serum amylase come from and where does it go? Gastroenterology clinics of North America 142 1702756
2020 Gene Therapy in Cancer Treatment: Why Go Nano? Pharmaceutics 139 32151052
2012 Epidemiology of Graves' orbitopathy (GO) and relationship with thyroid disease. Best practice & research. Clinical endocrinology & metabolism 133 22632364
2016 PIWIs Go Viral: Arbovirus-Derived piRNAs in Vector Mosquitoes. PLoS pathogens 132 28033427
2008 Gerodermia osteodysplastica is caused by mutations in SCYL1BP1, a Rab-6 interacting golgin. Nature genetics 129 18997784
2004 Ether a go-go potassium channels as human cervical cancer markers. Cancer research 127 15466192
2018 FKBP Ligands-Where We Are and Where to Go? Frontiers in pharmacology 121 30568592
2006 Round and round we go: cyclic peptides in disease. Current medicinal chemistry 121 16918350
2023 Where should siRNAs go: applicable organs for siRNA drugs. Experimental & molecular medicine 117 37430086
2011 Macrophage podosomes go 3D. European journal of cell biology 107 20801545
2009 Molecular mechanisms of go signaling. Neuro-Signals 107 19212138
2010 Should I stay or should I go? Becoming a granule cell. Trends in neurosciences 99 20138673
2020 Round, round we go - strategies for enzymatic cofactor regeneration. Natural product reports 94 32582886
2012 Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Database : the journal of biological databases and curation 94 22301074
1999 Identification of ether à go-go and calcium-activated potassium channels in human melanoma cells. The Journal of membrane biology 91 10489423
2006 Ether à go-go potassium channel expression in soft tissue sarcoma patients. Molecular cancer 90 17022811
2002 Nogo on the go. Neuron 89 12408839
2002 DNA hypermethylation: when tumour suppressor genes go silent. Human genetics 86 12189484
2011 Concise review: mesenchymal tumors: when stem cells go mad. Stem cells (Dayton, Ohio) 85 21425403
2011 Targeted therapies: how personal should we go? Nature reviews. Clinical oncology 85 22083042
2006 Ether à go-go potassium channels and cancer. Cancer letters 85 16473665
2020 Phospholipid ebb and flow makes mitochondria go. The Journal of cell biology 84 32614384
2015 Tight Junctions Go Viral! Viruses 83 26404354
2020 Synucleinopathies: Where we are and where we need to go. Journal of neurochemistry 82 31957016
2006 Acid suppression therapy: where do we go from here? Digestive diseases (Basel, Switzerland) 79 16699262
2013 MicroRNA-34a inhibits human osteosarcoma proliferation by downregulating ether à go-go 1 expression. International journal of medical sciences 75 23569431
2008 Cell death by necrosis, a regulated way to go. Current molecular medicine 71 18473819
2018 Ether-à-go-go K+ channels: effective modulators of neuronal excitability. The Journal of physiology 68 29333676
2003 Letting lipids go: hormone-sensitive lipase. Current opinion in lipidology 67 12840660
2010 Where to go with FTO? Trends in endocrinology and metabolism: TEM 60 21131211
2004 Expression of ether à go-go potassium channels in human gliomas. Neuroscience letters 60 15364405
2016 Diagnostic Immunohistochemistry: What Can Go Wrong and How to Prevent It. Archives of pathology & laboratory medicine 56 27575264
2022 To go or not to go? Biological logic gating engineered T cells. Journal for immunotherapy of cancer 50 35379738
2018 Melanoma: Where we are and where we go. Journal of cellular physiology 47 30362507
2016 How Far Do We Go With Genetic Evaluation? Gene, Panel, and Tumor Testing. American Society of Clinical Oncology educational book. American Society of Clinical Oncology. Annual Meeting 47 27249773
2022 How low can they go? Aerobic respiration by microorganisms under apparent anoxia. FEMS microbiology reviews 46 35094062
2016 Go in! Go out! Inducible control of nuclear localization. Current opinion in chemical biology 46 27372352
2019 Gō model revisited. Biophysics and physicobiology 45 31984178
2011 Transcriptional and post-transcriptional mechanisms for oncogenic overexpression of ether à go-go K+ channel. PloS one 45 21655246
2019 GORAB scaffolds COPI at the trans-Golgi for efficient enzyme recycling and correct protein glycosylation. Nature communications 44 30631079
2009 When is it time for reverse transcription to start and go? Retrovirology 43 19261185
2002 Characterization of the GO system of Pseudomonas aeruginosa. FEMS microbiology letters 42 12445642
2012 We still have a long way to go to effectively deliver genes! Journal of applied biomaterials & functional materials 41 23015375
1999 New ether-à-go-go K(+) channel family members localized in human telencephalon. The Journal of biological chemistry 40 10455180
2024 Immunotherapy for esophageal cancer: Where are we now and where can we go. World journal of gastroenterology 39 38817664
2019 IL-33 in obesity: where do we go from here? Inflammation research : official journal of the European Histamine Research Society ... [et al.] 38 30656387
2003 Hibernation: when good clocks go cold. Journal of biological rhythms 38 12932080
2012 SCYL1BP1 modulates neurite outgrowth and regeneration by regulating the Mdm2/p53 pathway. Molecular biology of the cell 37 23051735
2008 G protein-coupled receptors go extracellular: RhoA integrates the integrins. Molecular interventions 37 18829842
2004 When biotech proteins go off-patent. Trends in biotechnology 37 15283985
2021 Targeting TREM2 for Parkinson's Disease: Where to Go? Frontiers in immunology 34 35003116
2013 The elusive compass of clostridial neurotoxins: deciding when and where to go? Current topics in microbiology and immunology 34 23239350
2008 Unphosphorylated STATs go nuclear. Current opinion in genetics & development 34 18840523
2017 Genomic testing for localized prostate cancer: where do we go from here? Current opinion in urology 33 28661898
2015 Existence and control of Go/No-Go decision transition threshold in the striatum. PLoS computational biology 32 25910230
2011 Novel curcumin analogs, GO-Y030 and GO-Y078, are multi-targeted agents with enhanced abilities for multiple myeloma. Anticancer research 32 22110192
2015 GORAB Missense Mutations Disrupt RAB6 and ARF5 Binding and Golgi Targeting. The Journal of investigative dermatology 30 26000619
2003 Pregnancy in dialysis patients: where do we go from here? Seminars in dialysis 30 12969389
2020 Biocatalytic membrane: Go far beyond enzyme immobilization. Engineering in life sciences 29 33204231
2018 Quorum Sensing and Quorum Quenching in Agrobacterium: A "Go/No Go System"? Genes 29 29659511
2009 A novel missense mutation in SCYL1BP1 produces geroderma osteodysplastica phenotype indistinguishable from that caused by nullimorphic mutations. American journal of medical genetics. Part A 28 19681135
2007 Improved functional expression of recombinant human ether-a-go-go (hERG) K+ channels by cultivation at reduced temperature. BMC biotechnology 28 18096051
1991 Growth cone transduction: Go and GAP-43. Journal of cell science. Supplement 27 1840457
2022 Kv Channel Ancillary Subunits: Where Do We Go from Here? Physiology (Bethesda, Md.) 25 35797055
2016 Lipid droplets go nuclear. The Journal of cell biology 25 26728852
2021 Nanozymes go oral: nanocatalytic medicine facilitates dental health. Journal of materials chemistry. B 24 33427841
2019 Gene-edited babies: What went wrong and what could go wrong. PLoS biology 24 31039144
1999 Glaucoma genetics: where are we? Where will we go? Current opinion in ophthalmology 24 10537763
2012 Sexing mammalian sperm - Where do we go from here? The Journal of reproduction and development 23 23124700
2009 Developmental adaptation: where we go from here. American journal of human biology : the official journal of the Human Biology Council 23 19214999
2017 Examining tissue composition, whole-bone morphology and mechanical behavior of GorabPrx1 mice tibiae: A mouse model of premature aging. Journal of biomechanics 22 29108851
2006 X-chromosome kiss and tell: how the Xs go their separate ways. Cold Spring Harbor symposia on quantitative biology 22 17381325
2023 Durotaxis and negative durotaxis: where should cells go? Communications biology 21 37973823
2016 Management of Hypertension in Diabetic Nephropathy: How Low Should We Go? Blood purification 21 26766168
2016 Oct-1, to go or not to go? That is the PolII question. Biochimica et biophysica acta 21 27063953
2022 Gene Therapy and Hemophilia: Where Do We Go from Here? Journal of blood medicine 20 36226233
2024 Purinergic enzymes on extracellular vesicles: immune modulation on the go. Frontiers in immunology 19 38426088
2020 Papillomaviruses Go Retro. Pathogens (Basel, Switzerland) 19 32272661
2016 Touch, act and go: landing and operating on nucleosomes. The EMBO journal 19 26787641
2016 Topoisomerases: Resistance versus Sensitivity, How Far We Can Go? Medicinal research reviews 19 27687257
2020 Viruses go modular. The Journal of biological chemistry 18 32111739
2014 Adenosine pathway and cancer: where do we go from here? Expert opinion on therapeutic targets 18 24958495
2014 Microexons go big. Cell 18 25525868
2012 Should I stay or should I go? Ephs and ephrins in neuronal migration. Neuro-Signals 18 22456188
2010 Occupational rhinitis and asthma: where do we stand, where do we go? Current allergy and asthma reports 18 20425505
2013 PTEN plasticity: how the taming of a lethal gene can go too far. Trends in cell biology 17 23578748
2010 Interactions at human ether-à-go-go-related gene channels. Toxicological sciences : an official journal of the Society of Toxicology 17 20071423
2010 Overexpression of SCYL1-BP1 stabilizes functional p53 by suppressing MDM2-mediated ubiquitination. FEBS letters 17 20849854
2003 Expression and role of the ether-à-go-go-related (MERG1A) potassium-channel protein during preimplantation mouse development. Biology of reproduction 17 14668215

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