Affinage

GIMAP2

GTPase IMAP family member 2 · UniProt Q9UG22

Length
337 aa
Mass
38.0 kDa
Annotated
2026-06-10
7 papers in source corpus 4 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/4 claims corpus-supported (75%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GIMAP2 is a TRAFAC-class guanine nucleotide-binding protein that functions as a GTP-dependent, self-assembling scaffold on intracellular membranes (PMID:21059949). Crystal structures across nucleotide states establish that nucleotide-free and GDP-bound GIMAP2 is monomeric, with a distinctive amphipathic helix α7 packed against switch II, and that GTP binding drives assembly into linear oligomers through two distinct G-domain interfaces: a switch I-stabilized dimerization interface spanning the nucleotide-binding site and a second interface exposed when switch II rearrangement releases α7 (PMID:21059949). These GTP-loaded oligomers act as scaffolds at the surface of lipid droplets and the endoplasmic reticulum (PMID:21059949, PMID:32306002). GIMAP2's own GTPase activity is intrinsically weak and is stimulated in trans by heterodimerization with GIMAP7, which supplies a catalytic arginine, establishing that GTP turnover in the GIMAP family is governed by homo- and heterodimerization (PMID:23454188). Beyond this nucleotide-cycling and scaffolding mechanism, the downstream cellular consequences of GIMAP2 activity remain largely uncharacterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2010 High

    Resolved how nucleotide state controls GIMAP2 conformation and self-assembly, defining it as a GTP-switch scaffold rather than a conventional signaling GTPase.

    Evidence X-ray crystallography of GIMAP2 in nucleotide-free, GDP-, and GTP-bound states with mutagenesis of oligomerization interfaces

    PMID:21059949

    Open questions at the time
    • Does not identify what cargo or effectors the oligomeric scaffold recruits
    • Intrinsic GTPase rate and the trigger for nucleotide exchange in cells not defined
  2. 2010 Medium

    Placed the GTP-dependent oligomer in a cellular context, showing GIMAP2 assembles on lipid droplet surfaces in T cells.

    Evidence Cellular localization and biochemical fractionation in Jurkat T cells linked to structural data

    PMID:21059949

    Open questions at the time
    • Functional consequence of lipid droplet scaffolding not established
    • Single cell type; generality across tissues untested
  3. 2013 High

    Explained how GIMAP2 GTPase activity is regulated, showing GIMAP7 acts as a trans-activating partner that supplies a catalytic arginine.

    Evidence Crystal structure of GTP-bound GIMAP7 homodimer plus in vitro GTP hydrolysis assays of GIMAP7-stimulated GIMAP2 turnover

    PMID:23454188

    Open questions at the time
    • Whether GIMAP2-GIMAP7 heterodimers form at physiological levels in cells not shown
    • Upstream signals controlling heterodimer formation unknown
  4. 2020 Medium

    Confirmed GIMAP2 membrane localization in a non-lymphoid (breast cancer) cell line, extending the scaffold model beyond T cells.

    Evidence Super-resolution immunofluorescence of endogenous and mCherry-tagged GIMAP2 co-stained with ER and lipid droplet markers in MDA-MB-436 cells

    PMID:32306002

    Open questions at the time
    • Co-localization does not establish functional role at the ER
    • No interaction partners identified in this system
  5. 2021 Low

    First attempt to connect GIMAP2 to a cellular phenotype, linking its loss to cell cycle arrest and apoptotic pathway changes in cancer cells.

    Evidence siRNA knockdown in oral squamous cell carcinoma lines with immunoblotting of cell cycle and apoptosis markers

    PMID:34992682

    Open questions at the time
    • Correlative knockdown without rescue; off-target effects not excluded
    • No mechanistic link between the scaffolding/GTPase activity and the observed CDK4/6, p53/p21, or Bcl-2/Bax changes
    • Effects observed in a single tumor context

Open questions

Synthesis pass · forward-looking unresolved questions
  • The effectors and physiological substrates recruited by the GIMAP2 GTP-dependent oligomeric scaffold, and how its membrane scaffolding connects to cell cycle or apoptotic outcomes, remain unknown.
  • No identified downstream effector bound by the oligomer
  • No mechanistic bridge between GTPase cycling and the cancer-cell phenotypes
  • Physiological function in T cells not directly tested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003924 GTPase activity 2 GO:0005198 structural molecule activity 2
Localization
GO:0005811 lipid droplet 2 GO:0005783 endoplasmic reticulum 1
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 Crystal structures of GIMAP2 in nucleotide-free, GDP-bound, and GTP-bound states revealed that nucleotide-free and GDP-bound GIMAP2 are monomeric, with a TRAFAC-class guanine nucleotide-binding domain and a unique amphipathic helix α7 packing against switch II. GTP induces oligomerization via two distinct interfaces: switch I stabilization mediates dimerization across the nucleotide-binding site (involving the GIMAP specificity motif and nucleotide base), while structural rearrangements in switch II release α7 to allow oligomerization via a second interface. Mutagenesis confirmed the linear oligomer architecture. X-ray crystallography of multiple GIMAP2 constructs in different nucleotide states; site-directed mutagenesis to validate oligomerization interfaces Proceedings of the National Academy of Sciences of the United States of America High 21059949
2010 GIMAP2 oligomers function at the surface of lipid droplets in a Jurkat T cell line, demonstrating a role as a GTP-dependent protein scaffold on intracellular membranes. Cellular localization assay in Jurkat T cells; biochemical fractionation linked to structural data Proceedings of the National Academy of Sciences of the United States of America Medium 21059949
2013 GIMAP7, identified on lipid droplets, stimulates GTP hydrolysis by GIMAP2 via heterodimerization through an analogous mechanism to GIMAP7 homodimerization, where a catalytic arginine supplied in trans activates GTPase activity. This demonstrates that GTPase activity in the GIMAP family is controlled by homo- and heterodimerization. Crystal structure of GTP-bound GIMAP7 homodimer; in vitro GTP hydrolysis assays measuring GIMAP7-stimulated hydrolysis of GIMAP2; identification of catalytic arginine by structural analysis Structure (London, England : 1993) High 23454188
2020 GIMAP2 localizes to the endoplasmic reticulum and to the surface of lipid droplets in MDA-MB-436 cells, as confirmed by immunofluorescence of both endogenous and exogenous (mCherry-tagged) GIMAP2 co-stained with organelle-specific dyes imaged by super-resolution microscopy. Immunofluorescence staining of endogenous and exogenous GIMAP2-mCherry fusion protein; co-localization with organelle dyes (mitochondria, ER, lipid droplets) by super-resolution N-SIM microscopy Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences Medium 32306002
2021 GIMAP2 knockdown in oral squamous cell carcinoma cells caused cell cycle arrest associated with downregulation of CDK4, CDK6, and phosphorylated Rb, and upregulation of p53 and p21; additionally, knockdown affected anti-apoptotic function by upregulating Bcl-2 and downregulating Bax and Bak. siRNA-mediated GIMAP2 knockdown in OSCC cell lines; immunoblotting for CDK4, CDK6, pRb, p53, p21, Bcl-2, Bax, Bak; cell growth and apoptosis assays Oncology letters Low 34992682

Source papers

Stage 0 corpus · 7 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Genome-wide association study identifies GIMAP as a novel susceptibility locus for Behcet's disease. Annals of the rheumatic diseases 93 23041938
2010 Structural basis of oligomerization in septin-like GTPase of immunity-associated protein 2 (GIMAP2). Proceedings of the National Academy of Sciences of the United States of America 51 21059949
2013 Structural insights into the mechanism of GTPase activation in the GIMAP family. Structure (London, England : 1993) 42 23454188
2011 GTP-dependent scaffold formation in the GTPase of Immunity Associated Protein family. Small GTPases 11 21686278
2021 Aberrant GIMAP2 expression affects oral squamous cell carcinoma progression by promoting cell cycle and inhibiting apoptosis. Oncology letters 5 34992682
2010 Purification, crystallization and preliminary X-ray analysis of human GIMAP2. Acta crystallographica. Section F, Structural biology and crystallization communications 5 20516611
2020 [Subcellular localization of GTPase of immunity-associated protein 2]. Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences 0 32306002

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