Affinage

FCN1

Ficolin-1 · UniProt O00602

Length
326 aa
Mass
35.1 kDa
Annotated
2026-06-09
11 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 3/4 claims corpus-supported (75%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

FCN1 encodes M-ficolin (ficolin-1), a pattern-recognition molecule whose collagen-like domain directly binds the CH1 and CH3 domains of IgG1, an interaction mappable and competable with synthetic IgG1 domain peptides (PMID:28900133). Non-synonymous coding variants define its functional output: Ser268Pro abolishes M-ficolin production entirely, while Ala218Thr and Asn289Ser cripple its ligand-binding capacity, evidenced by reduced binding to Group B Streptococcus (PMID:23209787). Expression and secretion of ficolin-1 from monocytes are governed by FCN1 promoter polymorphisms at positions -542 and -144, which set both mRNA levels and secreted protein output (PMID:22673311). Within macrophages, FCN1 acts as a proinflammatory amplifier, promoting LPS-induced IL-1β maturation through the NLRP3–caspase-1 axis (PMID:36932401). Beyond these findings, the structural basis of complement activation by FCN1 has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2012 Medium

    Establishing how FCN1 expression is set, promoter polymorphisms were shown to control transcript abundance and secreted ficolin-1, linking genetic variation to quantitative immune output.

    Evidence FCN1 promoter SNP genotyping with monocyte qRT-PCR and ELISA on culture supernatants

    PMID:22673311

    Open questions at the time
    • Transcription factors binding the -542/-144 region not identified
    • Functional consequence of altered ficolin-1 levels on complement activation not tested
  2. 2012 High

    To connect coding variation with function, mutagenesis defined residues required for M-ficolin production versus ligand binding, distinguishing null from binding-deficient alleles.

    Evidence Recombinant protein expression of variant M-ficolin with Group B Streptococcus binding assay, corroborated by clinical genotype-phenotype data

    PMID:23209787

    Open questions at the time
    • Structural basis of how Ala218Thr/Asn289Ser impair binding not resolved
    • Effect on downstream complement activation not measured
  3. 2017 Medium

    Addressing what M-ficolin recognizes beyond microbial ligands, its collagen-like domain was shown to directly bind IgG1, implicating it in antibody-associated recognition.

    Evidence In vitro Western blot binding assay with synthetic CH1/CH3 peptide inhibition

    PMID:28900133

    Open questions at the time
    • Physiological/in vivo relevance of the IgG1 interaction not established
    • Single lab, no reciprocal or structural validation
  4. 2023 Medium

    Probing an intracellular/inflammatory role, FCN1 overexpression was found to enhance IL-1β maturation via NLRP3-caspase-1, positioning it as a proinflammatory amplifier in macrophages.

    Evidence FCN1 overexpression in THP-1-derived macrophages with immunoblotting for IL-1β, NLRP3, caspase-1

    PMID:36932401

    Open questions at the time
    • Gain-of-function only; loss-of-function not tested
    • Mechanism linking FCN1 to NLRP3 activation unknown
    • Single lab, single method

Open questions

Synthesis pass · forward-looking unresolved questions
  • How FCN1's pattern recognition couples mechanistically to lectin-pathway complement activation and to intracellular inflammasome signaling remains unresolved.
  • No structural model of FCN1 ligand complexes
  • Link between extracellular recognition and macrophage NLRP3 activation not established
  • MASP partners and complement readouts not characterized in this corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Pathway
R-HSA-168256 Immune System 2
Partners

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2017 The collagen-like domain of FCN1 (M-ficolin) directly binds to IgG1 in vitro through portions of the CH1 and CH3 domains of IgG1, as demonstrated by Western blot binding assays; synthetic peptides corresponding to the CH1 and CH3 domains of IgG1 efficiently inhibited this association. Western blot binding assay (in vitro), synthetic peptide inhibition Scientific reports Medium 28900133
2012 The Ser268Pro (rs150625869) non-synonymous mutation in FCN1 leads to complete loss of M-ficolin production. The Ala218Thr (rs148649884) and Asn289Ser (rs138055828) mutations cripple the ligand-binding capability of M-ficolin, as demonstrated by reduced binding to Group B Streptococcus in recombinant protein assays. Recombinant protein expression and ligand-binding assay (Group B Streptococcus binding), corroborated by clinical genotype-phenotype data PloS one High 23209787
2012 Promoter polymorphisms in FCN1 (positions -542 and -144) regulate both FCN1 mRNA expression and ficolin-1 protein secretion by monocytes; individuals homozygous for minor alleles at these positions have significantly higher FCN1 mRNA levels and higher ficolin-1 levels in monocyte culture supernatants. FCN1 mRNA expression in isolated monocytes/granulocytes (qRT-PCR implied), ELISA for ficolin-1 in monocyte culture supernatants, genotyping of FCN1 promoter SNPs Genes and immunity Medium 22673311
2023 FCN1 overexpression in THP-1-derived macrophages promotes LPS-induced activation and maturation of the proinflammatory cytokine IL-1β via the NLRP3-caspase-1 axis. FCN1 overexpression in THP-1-derived macrophages, immunoblotting for IL-1β, NLRP3, and caspase-1 Journal of translational medicine Medium 36932401

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 MBL2, FCN1, FCN2 and FCN3-The genes behind the initiation of the lectin pathway of complement. Molecular immunology 122 19501910
2012 Variation in FCN1 affects biosynthesis of ficolin-1 and is associated with outcome of systemic inflammation. Genes and immunity 64 22673311
2007 Polymorphisms in the ficolin 1 gene (FCN1) are associated with susceptibility to the development of rheumatoid arthritis. Rheumatology (Oxford, England) 52 18032536
2023 Identification of FCN1 as a novel macrophage infiltration-associated biomarker for diagnosis of pediatric inflammatory bowel diseases. Journal of translational medicine 33 36932401
2012 Non-synonymous polymorphisms in the FCN1 gene determine ligand-binding ability and serum levels of M-ficolin. PloS one 23 23209787
2017 FCN1 (M-ficolin), which directly associates with immunoglobulin G1, is a molecular target of intravenous immunoglobulin therapy for Kawasaki disease. Scientific reports 16 28900133
2024 FPR1 signaling aberrantly regulates S100A8/A9 production by CD14+FCN1hi macrophages and aggravates pulmonary pathology in severe COVID-19. Communications biology 15 39402337
2020 Ficolin-1 gene (FCN1) -144 C/A polymorphism is associated with adverse outcome of severe pneumonia in the under-five Egyptian children: A multicenter study. Pediatric pulmonology 8 32142211
2024 Sputum Transcriptomics Reveals FCN1+ Macrophage Activation in Mild Eosinophilic Asthma Compared to Non-Asthmatic Eosinophilic Bronchitis. Allergy, asthma & immunology research 7 38262391
2022 Effect of Polymorphisms in the FCN1, FCN2, and FCN3 Genes on the Susceptibility to Develop Rheumatoid Arthritis: A Systematic Review. International journal of rheumatology 5 36569030
2021 FCN1 polymorphisms are not the markers of dental caries susceptibility in Polish children: A case-control study. Oral diseases 3 33600013

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