Affinage

FAM117B

Protein FAM117B · UniProt Q6P1L5

Round 2 corrected
Length
589 aa
Mass
62.0 kDa
Annotated
2026-04-28
40 papers in source corpus 5 papers cited in narrative 5 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

FAM117B is a KEAP1-binding protein that competitively displaces NRF2 from the KEAP1–NRF2 complex, thereby inhibiting NRF2 ubiquitination and activating NRF2-dependent transcriptional programs that promote cell survival and chemoresistance (PMID:36719368). FAM117B also physically interacts with and activates DYRK1A kinase, establishing a FAM117B→DYRK1A→PLK2 signaling axis that drives cancer cell proliferation and metastasis (PMID:41504297). In airway epithelial cells, FAM117B operates downstream of GLCCI1 and DYRK1A to activate NRF2 signaling and protect mitochondrial function during allergic inflammation (PMID:40490147).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2013 Medium

    Proteomic mapping of the KEAP1 interactome established that ETGE-motif-containing proteins competitively displace NRF2 from KEAP1, providing the mechanistic framework within which FAM117B was later classified as a KEAP1 competitor.

    Evidence Affinity purification mass spectrometry of the KEAP1 interactome with competitive binding assays

    PMID:23382044

    Open questions at the time
    • FAM117B was not individually validated in this study; its membership in the KEAP1-competitor class was inferred from later work
    • The stoichiometry and affinity of FAM117B–KEAP1 binding relative to NRF2 remain uncharacterized
  2. 2023 High

    Direct biochemical and functional validation demonstrated that FAM117B binds KEAP1, competitively displaces NRF2, blocks NRF2 ubiquitination, and that FAM117B-driven gastric cancer growth and chemoresistance are NRF2-dependent, establishing the core mechanism linking FAM117B to NRF2 pathway activation.

    Evidence Reciprocal Co-IP, ubiquitination assays, NRF2 knockdown rescue, in vitro and in vivo tumor growth models in gastric cancer

    PMID:36719368

    Open questions at the time
    • Structural basis of the FAM117B–KEAP1 interaction (e.g., whether FAM117B uses a canonical ETGE motif) is unresolved
    • Whether FAM117B expression is itself regulated by NRF2 (potential feedback loop) has not been tested
  3. 2023 Low

    High-throughput interactome mapping placed FAM117B within the DYRK1A protein interaction network, opening the question of whether FAM117B regulates or is regulated by DYRK1A kinase.

    Evidence AP-MS interactome survey across multiple human cell lines

    PMID:37900285

    Open questions at the time
    • No functional validation of the FAM117B–DYRK1A interaction was performed; awaits reciprocal Co-IP and functional assays
    • Whether FAM117B is a substrate or regulator of DYRK1A was not addressed
  4. 2025 Medium

    Placing FAM117B downstream of GLCCI1/DYRK1A and upstream of NRF2, this study showed the DYRK1A/FAM117B axis protects mitochondrial function in allergic airway inflammation by inhibiting NRF2 ubiquitination, bridging the DYRK1A interaction to the KEAP1/NRF2 mechanism.

    Evidence OVA-induced allergic asthma mouse model, bronchial epithelial cells with GLCCI1 overexpression, mitochondrial readouts (membrane potential, ROS, ATP, mtDNA), NRF2 ubiquitination assays

    PMID:40490147

    Open questions at the time
    • How DYRK1A biochemically activates FAM117B (e.g., direct phosphorylation, stabilization) is not defined
    • Single-lab finding; independent replication in additional asthma models needed
  5. 2026 Medium

    Epistatic rescue experiments established a linear FAM117B→DYRK1A→PLK2 signaling axis in which FAM117B activates DYRK1A-mediated phosphorylation and stabilization of PLK2, driving colorectal cancer proliferation and metastasis.

    Evidence Co-IP, phosphorylation assays, knockdown/overexpression epistasis, in vivo colorectal cancer and liver metastasis models

    PMID:41504297

    Open questions at the time
    • The molecular mechanism by which FAM117B activates DYRK1A (allosteric activation, scaffolding, or other) is unknown
    • Whether the DYRK1A–PLK2 axis and the KEAP1–NRF2 axis represent parallel or convergent outputs of FAM117B has not been tested
    • Single-lab finding; independent confirmation in additional cancer types needed

Open questions

Synthesis pass · forward-looking unresolved questions
  • The biochemical mechanism by which FAM117B activates DYRK1A, whether FAM117B is itself a DYRK1A phosphosubstrate, the structural basis of FAM117B–KEAP1 binding, and the integration of the DYRK1A and NRF2 branches of FAM117B signaling remain open questions.
  • No structural data for FAM117B or its complexes exist
  • Whether FAM117B functions in non-cancer, non-asthma physiological contexts is unexplored
  • Regulation of FAM117B expression and protein stability is uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-1643685 Disease 2 R-HSA-8953897 Cellular responses to stimuli 2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 Proteomic analysis of KEAP1-interacting proteins identified that proteins containing an ETGE motif can compete with NRF2 for KEAP1 binding, inhibiting NRF2 ubiquitination. FAM117B was subsequently identified as a KEAP1-interacting protein operating via this competitive binding mechanism. Affinity purification mass spectrometry of KEAP1 interactome; competitive binding assays Cancer research Medium 23382044
2023 FAM117B directly binds KEAP1 and competes with NRF2 for KEAP1 binding, thereby reducing ubiquitin-mediated degradation of NRF2 and activating the KEAP1/NRF2 signaling pathway. FAM117B-driven gastric cancer cell growth and chemoresistance were shown to be NRF2-dependent, as NRF2 knockdown abolished these effects. Co-immunoprecipitation (Co-IP) to demonstrate FAM117B-KEAP1 interaction and competitive displacement of NRF2; ubiquitination assays; NRF2 knockdown rescue experiments; in vitro and in vivo tumor growth assays The Journal of clinical investigation High 36719368
2023 FAM117B was identified as a protein interactor of DYRK1A kinase in multiple human cell line interactome studies, placing FAM117B within the DYRK1A protein interaction network. High-throughput affinity-purification mass spectrometry (AP-MS) interactome mapping Frontiers in cell and developmental biology Low 37900285
2025 GLCCI1 overexpression activates the DYRK1A/FAM117B axis, which in turn activates NRF2 signaling by inhibiting NRF2 ubiquitination degradation, thereby ameliorating mitochondrial dysfunction in allergic asthma. FAM117B acts downstream of DYRK1A and upstream of the KEAP1/NRF2 axis in this pathway. In vivo OVA-induced allergic asthma mouse model; in vitro bronchial epithelial cell experiments; GLCCI1 overexpression; measurement of mitochondrial membrane potential, ROS, ATP, mtDNA; Western blotting; NRF2 ubiquitination assays Cellular signalling Medium 40490147
2026 FAM117B physically interacts with DYRK1A and acts as an upstream regulator of DYRK1A activity. FAM117B promotes DYRK1A-mediated phosphorylation of PLK2, which stabilizes PLK2 protein and drives colorectal cancer proliferation, migration, invasion, and liver metastasis. DYRK1A overexpression reversed the inhibitory effects of FAM117B knockdown, and PLK2 knockdown counteracted DYRK1A overexpression effects, establishing the FAM117B→DYRK1A→PLK2 axis by epistasis. Co-IP, phosphorylation assays, knockdown/overexpression epistasis, in vivo tumor models Cell biology international Medium 41504297

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Discovery and refinement of loci associated with lipid levels. Nature genetics 2409 24097068
2012 Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 1718 22658674
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2018 VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell discovery 829 29507755
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2001 A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. Nature genetics 526 11586298
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2017 Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Proceedings of the National Academy of Sciences of the United States of America 282 28611215
2004 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Nature biotechnology 266 15146197
2013 Proteomic analysis of ubiquitin ligase KEAP1 reveals associated proteins that inhibit NRF2 ubiquitination. Cancer research 214 23382044
2016 An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. Nature communications 211 27173435
2013 The protein interaction landscape of the human CMGC kinase group. Cell reports 174 23602568
2021 Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies. The Lancet. Neurology 159 33773637
2005 Targeted proteomic analysis of 14-3-3 sigma, a p53 effector commonly silenced in cancer. Molecular & cellular proteomics : MCP 153 15778465
2009 Ubiquitin-mediated proteolysis of HuR by heat shock. The EMBO journal 142 19322201
2007 Toward a confocal subcellular atlas of the human proteome. Molecular & cellular proteomics : MCP 114 18029348
2015 Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk. American journal of respiratory and critical care medicine 101 26051272
2020 Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases. Molecular cell 88 32707033
2019 Genome-wide association study of cerebral small vessel disease reveals established and novel loci. Brain : a journal of neurology 88 31430377
2020 Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Cell reports 79 32814053
2023 FAM117B promotes gastric cancer growth and drug resistance by targeting the KEAP1/NRF2 signaling pathway. The Journal of clinical investigation 68 36719368
2013 LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. Nature communications 64 23443559
2015 Phospho-tyrosine dependent protein-protein interaction network. Molecular systems biology 61 25814554
2020 Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D. Nature communications 60 31980649
2019 Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. Nature communications 60 31515488
2023 A central chaperone-like role for 14-3-3 proteins in human cells. Molecular cell 54 36931259
2022 NUDT21 limits CD19 levels through alternative mRNA polyadenylation in B cell acute lymphoblastic leukemia. Nature immunology 46 36138187
2023 Insights from the protein interaction Universe of the multifunctional "Goldilocks" kinase DYRK1A. Frontiers in cell and developmental biology 14 37900285
2025 GLCCI1 ameliorates mitochondrial dysfunction in allergic asthma mice via DYRK1A/FAM117B-dependent NRF2 activation. Cellular signalling 3 40490147
2026 FAM117B Promotes Colorectal Cancer Progression by Enhancing DYRK1A-mediated Phosphorylation of PLK2. Cell biology international 0 41504297
2025 Inhibition of gastric adenocarcinoma proliferation by WSGC@MS: Role of KEAP1/NRF2 signaling pathway and autophagy regulation. Materials today. Bio 0 40688680
2025 Systematic Characterization of LUHMES Cell-Based Parkinson's Disease Models Reveals Potential Novel Drug Targets. Molecular neurobiology 0 41405732
2025 Genome-wide association for sarcoidosis identifies novel risk loci and genetic heritability in African and European ancestries: a meta-analysis from the Finngen, Million Veteran Program, UK Biobank, and Biobank Japan datasets. Orphanet journal of rare diseases 0 41466414