Affinage

Showing RAMACFAM103A1 is a alias.

RAMAC

RNA guanine-N7 methyltransferase activating subunit · UniProt Q9BTL3

Length
118 aa
Mass
14.4 kDa
Annotated
2026-06-10
6 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RAMAC (RAM/FAM103A1) is an obligate activating subunit of the mammalian mRNA cap methyltransferase complex, where it partners with RNMT to drive efficient cap methylation required for gene expression, mRNA translation, and cell viability (PMID:22099306). RAMAC is organized into two functional modules: an N-terminal domain that activates RNMT and a C-terminal RNA-binding domain; while RNMT and RAMAC each bind RNA only weakly as monomers, assembly into the RAM-RNMT complex markedly increases RNA affinity and confers full cap methylation activity, making RAMAC indirectly essential for maintaining mRNA levels, translation, and cell survival (PMID:22099306). Expression of RAMAC itself is transcriptionally repressed by the Mediator head module subunit hMED18 acting through the CDK/cyclin module (PMID:24840924).

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2011 High

    Established that mammalian cap methylation requires not just RNMT but an obligate activating partner, answering how the enzyme achieves sufficient RNA affinity and catalytic output in cells.

    Evidence Biochemical reconstitution of the RAM-RNMT complex with in vitro cap methylation and RNA-binding assays, domain dissection, and translation/viability assays in cells

    PMID:22099306

    Open questions at the time
    • Structural basis for how the N-terminal domain activates RNMT not resolved
    • Sequence/structural determinants of C-terminal RNA recognition not defined
    • Direct versus indirect contribution to specific mRNA targets not dissected
  2. 2014 Medium

    Addressed how RAMAC abundance is controlled by showing its promoter is repressed by a Mediator subunit, linking cap-methylation capacity to transcriptional regulation.

    Evidence siRNA depletion of hMED18 with ChIP of promoter occupancy by hMED18, hMED1, and CDK8 and transcriptional output measurement

    PMID:24840924

    Open questions at the time
    • Single-lab ChIP/knockdown study without independent replication
    • Mechanism by which the CDK/cyclin module enforces repression not detailed
    • Physiological conditions that modulate this repression unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RAMAC-dependent cap methylation is dynamically regulated and whether it acts selectively on specific transcript classes remains open.
  • No structural model of the RAM-RNMT-RNA complex in the corpus
  • No data on transcript selectivity of RAMAC-dependent methylation
  • No characterization of post-translational regulation of RAMAC

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003723 RNA binding 1 GO:0098772 molecular function regulator activity 1
Pathway
R-HSA-8953854 Metabolism of RNA 1
Partners
Complex memberships
RAM-RNMT mRNA cap methyltransferase complex

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2011 RAM (RNMT-Activating Mini protein)/Fam103a1 is an obligate component of the mammalian mRNA cap methyltransferase complex. RAM consists of an N-terminal RNMT-activating domain and a C-terminal RNA-binding domain. As monomers, RNMT and RAM have relatively weak affinity for RNA, but together their RNA affinity is significantly increased. RAM is required for efficient cap methylation both in vitro and in vivo, and is indirectly required to maintain mRNA expression levels, mRNA translation, and cell viability. Biochemical identification and characterization of the RAM-RNMT complex; in vitro cap methylation assays; RNA-binding assays; domain dissection; cell viability and translation assays Molecular cell High 22099306
2014 The promoter of the RAM/FAM103A1 gene is bound by Mediator head module subunit hMED18; depletion of hMED18 causes loss of hMED18 and hMED1 from the RAM/FAM103A1 promoter while CDK8 remains bound, indicating that hMED18 acts as a transcriptional repressor of RAM/FAM103A1 expression through a mechanism involving the CDK/cyclin module. siRNA-mediated depletion of hMED18; ChIP analysis of promoter occupancy by hMED18, hMED1, and hCDK8; transcriptional output measurement Genes to cells : devoted to molecular & cellular mechanisms Medium 24840924

Source papers

Stage 0 corpus · 6 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 RAM/Fam103a1 is required for mRNA cap methylation. Molecular cell 88 22099306
2021 Genome-Wide Association Studies for Milk Somatic Cell Score in Romanian Dairy Cattle. Genes 18 34680890
2024 Proliferative Sickle Cell Retinopathy: Outcomes of Vitreoretinal Surgery. Ophthalmology. Retina 7 38302055
2014 Mediator MED18 subunit plays a negative role in transcription via the CDK/cyclin module. Genes to cells : devoted to molecular & cellular mechanisms 7 24840924
2021 Screening of Potential Key Genes Related to Tubal Factor Infertility Based on Competitive Endogenous RNA Network. Genetic testing and molecular biomarkers 5 34003694
2020 A 15q25.2 microdeletion phenotype for premature ovarian failure in a Chinese girl: a case report and review of literature. BMC medical genomics 3 32894148

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