Affinage

EXPH5

Exophilin-5 · UniProt Q8NEV8

Length
1989 aa
Mass
222.5 kDa
Annotated
2026-06-09
23 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EXPH5 (Slac2-b) is a Rab27 effector that couples GTP-bound Rab27A/B to membrane vesicle docking and regulated secretion across multiple cell types (PMID:19966785, PMID:15039459). Its Slp homology domain binds GTP-Rab27A/B with selectivity over other Rabs, and this domain functions both as a structural determinant of secretory granule exocytosis and as a sensor for the activated, GTP-loaded state of Rab27 (PMID:15039459, PMID:16880209). As a Rab27b effector, EXPH5 acts in the multivesicular endosome docking and exosome/extracellular vesicle secretion pathway, where its depletion phenocopies loss of Rab27b (PMID:19966785). In keratinocytes, EXPH5 directs trafficking of CD63+ vesicles to the plasma membrane and the secretion of extracellular vesicles carrying matrix proteins, thereby coupling vesicle delivery to focal adhesion turnover, keratin intermediate filament integrity, and cell–matrix adhesion; its loss reduces Rab27a expression and disrupts focal adhesion dynamics (PMID:23176819, PMID:32890627). A loss-of-function frameshift mutation in EXPH5 causes inherited skin fragility, with impaired keratinocyte adhesion in the lower epidermis (PMID:23176819). EXPH5 has additionally been recovered as an ATM-regulated phosphoprotein, linking it to a DNA-damage-responsive secretory axis (PMID:39615799).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2004 High

    Establishing that Slac2-b is a bona fide Rab27 effector required showing its domain both binds the GTPase selectively and is functionally required for secretion, which this work demonstrated.

    Evidence Recombinant Slp homology domain binding specificity, Co-IP, and competition in streptolysin O-permeabilized parotid acinar cells with amylase release readout

    PMID:15039459

    Open questions at the time
    • Did not resolve EXPH5 domain architecture beyond the SHD
    • Mechanism of how SHD binding drives granule docking not defined
  2. 2006 Medium

    The question of whether the SHD could report Rab27 activation state was addressed by repurposing it as a GTP-Rab27 capture reagent, establishing it as a functional sensor of activated Rab27.

    Evidence Pull-down with Slac2-b SHD coupled to nucleotide thin-layer chromatography and permeabilized platelet dense granule secretion assay

    PMID:16880209

    Open questions at the time
    • Used SHD as a tool rather than testing endogenous EXPH5 function in platelets
    • Single lab
  3. 2009 High

    Whether EXPH5 contributes to exosome biogenesis was answered by placing it epistatically downstream of Rab27b in the MVE docking/exosome secretion pathway.

    Evidence RNAi knockdown in HeLa cells with exosome secretion assay and epistasis against Rab27b silencing

    PMID:19966785

    Open questions at the time
    • Molecular step EXPH5 controls within MVE docking not pinpointed
    • Cargo selectivity of EXPH5-dependent exosomes not defined
  4. 2012 High

    The physiological consequence of EXPH5 loss in humans was established by linking a frameshift mutation to inherited skin fragility and connecting EXPH5 to keratinocyte adhesion and cytoskeletal integrity.

    Evidence Whole-exome sequencing of patients, shRNA knockdown phenocopy in normal keratinocytes, and immunofluorescence co-localization with Rab27B and β4 integrin

    PMID:23176819

    Open questions at the time
    • Mechanism connecting vesicle trafficking to keratin filament disruption not resolved
    • Relationship between perinuclear vesicle accumulation and adhesion loss unclear
  5. 2020 High

    How EXPH5-dependent vesicle trafficking governs adhesion was clarified by linking CD63+ vesicle delivery and extracellular vesicle secretion of matrix proteins to focal adhesion dynamics.

    Evidence Live-cell imaging, shRNA knockdown, EV secretion assays, and focal adhesion dynamics in patient-derived and normal keratinocytes

    PMID:32890627

    Open questions at the time
    • Identity of the matrix cargo that drives adhesion not fully defined
    • Causal link between reduced Rab27a expression and EXPH5 loss not mechanistically explained
  6. 2024 Medium

    An unexpected regulatory input was revealed by recovering EXPH5 as an ATM-responsive phosphoprotein, suggesting its secretory function is coupled to DNA-damage signaling.

    Evidence Global proteome and phosphoproteomics profiling of ATM/ATR substrates in ATM-depleted neuroblastoma cells

    PMID:39615799

    Open questions at the time
    • EXPH5 was one of many hits without gene-specific functional validation
    • Phosphosite function and effect on Rab27 binding unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How EXPH5 phosphorylation, Rab27 binding, and cargo selection are integrated to control which vesicles dock and secrete in different cell types remains unresolved.
  • No structural model of the EXPH5–Rab27 complex in the timeline
  • Regulatory phosphorylation not functionally linked to secretion
  • Tissue-specific cargo determinants undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0048018 receptor ligand activity 2 GO:0140299 molecular sensor activity 2
Localization
GO:0031410 cytoplasmic vesicle 2 GO:0005886 plasma membrane 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 2 R-HSA-1474244 Extracellular matrix organization 1

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 Slac2-b (EXPH5) silencing inhibited exosome secretion in HeLa cells and phenocopied Rab27b silencing, placing Slac2-b as a Rab27b effector in the MVE docking/exosome secretion pathway. RNAi knockdown with exosome secretion assay; epistasis with Rab27b silencing Nature cell biology High 19966785
2004 The Slp homology domain of Slac2-b specifically binds Rab27A/B but not other Rabs; introduction of this recombinant domain into permeabilized parotid acinar cells strongly inhibited isoproterenol-stimulated amylase release, demonstrating that Slac2-b participates in Rab27B-mediated secretory granule exocytosis. Recombinant domain competition assay in streptolysin O-permeabilized cells; immunoprecipitation; subcellular fractionation Journal of cell science High 15039459
2006 The Slp homology domain of Slac2-b (GTP-Rab27-binding domain) was used as a pull-down tool to quantify GTP-bound Rab27 in platelets, demonstrating that Rab27 is maintained in the GTP-bound form in resting platelets and undergoes GTP hydrolysis upon dense granule secretion; this established Slac2-b's SHD as a functional GTP-Rab27 sensor. Pull-down assay using Slac2-b SHD to capture GTP-Rab27; thin-layer chromatography of nucleotides; permeabilized platelet secretion assay The Journal of biological chemistry Medium 16880209
2012 Loss-of-function frameshift mutation in EXPH5 (p.Pro1929Leufs*8) causes inherited skin fragility with disruption of keratinocyte adhesion in the lower epidermis and increased perinuclear vesicles; shRNA knockdown of Slac2-b in normal keratinocytes recapitulated cytoskeletal disruption (keratin intermediate filaments) and decreased adhesion; Slac2-b co-localizes with Rab27B and β4 integrin at early adhesion initiation sites in spreading keratinocytes. Whole-exome sequencing; shRNA knockdown; immunofluorescence co-localization; skin biopsy analysis; immunostaining American journal of human genetics High 23176819
2020 Slac2-b (EXPH5) coordinates extracellular vesicle secretion to regulate keratinocyte adhesion and migration: EXPH5-mutant and Slac2-b-deficient keratinocytes showed reduced CD63+ vesicle trafficking to the plasma membrane, reduced secretion of extracellular vesicles containing extracellular matrix proteins, reduced Rab27a protein expression, and defective focal adhesion dynamics; live imaging linked CD63+ vesicle trafficking to focal adhesion turnover. Live-cell imaging; shRNA knockdown; extracellular vesicle secretion assay; focal adhesion dynamics analysis; patient-derived keratinocytes The Journal of investigative dermatology High 32890627
2024 EXPH5 was identified as an ATM/ATR substrate by phosphoproteomics in human neuroblastoma cells; stronger downregulation of EXPH5 phosphopeptides after ATM depletion was documented, placing EXPH5 in an ATM-regulated secretory pathway. Global proteome and phosphoproteomics (ATM/ATR substrate profiling) in ATM-depleted neuroblastoma cells Neurobiology of disease Medium 39615799

Source papers

Stage 0 corpus · 23 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Rab27a and Rab27b control different steps of the exosome secretion pathway. Nature cell biology 2160 19966785
2004 The small GTPase Rab27B regulates amylase release from rat parotid acinar cells. Journal of cell science 94 15039459
2012 Germline Mutation in EXPH5 Implicates the Rab27B Effector Protein Slac2-b in Inherited Skin Fragility. American journal of human genetics 58 23176819
2006 Constitutive GDP/GTP exchange and secretion-dependent GTP hydrolysis activity for Rab27 in platelets. The Journal of biological chemistry 49 16880209
2016 Genomic Characterization of Metformin Hepatic Response. PLoS genetics 44 27902686
2015 Recently Identified Forms of Epidermolysis Bullosa. Annals of dermatology 36 26719633
2018 Next generation sequencing identifies double homozygous mutations in two distinct genes (EXPH5 and COL17A1) in a patient with concomitant simplex and junctional epidermolysis bullosa. Human mutation 28 30016581
2023 Revealing EXPH5 as a potential diagnostic gene biomarker of the late stage of COPD based on machine learning analysis. Computers in biology and medicine 21 36746116
2016 Association of Epidermolysis Bullosa Simplex With Mottled Pigmentation and EXPH5 Mutations. JAMA dermatology 18 27384765
2023 Selection signatures for local and regional adaptation in Chinese Mongolian horse breeds reveal candidate genes for hoof health. BMC genomics 16 36658473
2022 Pathomechanisms of epidermolysis bullosa: Beyond structural proteins. Matrix biology : journal of the International Society for Matrix Biology 11 35504439
2020 Slac2-b Coordinates Extracellular Vesicle Secretion to Regulate Keratinocyte Adhesion and Migration. The Journal of investigative dermatology 11 32890627
2014 Mutations in EXPH5 result in autosomal recessive inherited skin fragility. The British journal of dermatology 10 24443915
2015 Dissecting the mechanism of colorectal tumorigenesis based on RNA-sequencing data. Experimental and molecular pathology 9 25576648
2016 A novel homozygous deletion in EXPH5 causes a skin fragility phenotype. Clinical and experimental dermatology 7 27730671
2020 Exome Sequencing Analysis Identifies Rare Variants in ATM and RPL8 That Are Associated With Shorter Telomere Length. Frontiers in genetics 6 32425970
2023 A human identification system for hair shaft using RNA polymorphism. Forensic science international. Genetics 5 37611365
2024 The ataxia-telangiectasia disease protein ATM controls vesicular protein secretion via CHGA and microtubule dynamics via CRMP5. Neurobiology of disease 4 39615799
2025 Predictive effect and clinical diagnosis significance of exosome-related genes for nonalcoholic fatty liver disease-related hepatocellular carcinoma. Scientific reports 3 40595076
2024 Rare variants analyses suggest novel cleft genes in the African population. Scientific reports 3 38902479
2022 Potential di-genic contribution to guttate leukoderma as the predominant feature of epidermolysis bullosa simplex. Experimental dermatology 2 35960249
2024 Identification of Pathogenic Pathways for Recurrence of Focal Segmental Glomerulosclerosis after Kidney Transplantation. Diagnostics (Basel, Switzerland) 1 39125467
2024 Rare Variants Analyses Suggest Novel Cleft Genes in the African Population. Research square 0 38464065

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