Affinage

EXOC6B

Exocyst complex component 6B · UniProt Q9Y2D4

Length
811 aa
Mass
94.2 kDa
Annotated
2026-04-28
29 papers in source corpus 7 papers cited in narrative 7 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EXOC6B encodes a subunit of the octameric exocyst complex that tethers secretory vesicles to the plasma membrane, functioning in regulated exocytosis across multiple cell types. It binds Rab10-GTP to couple insulin signaling to GLUT4 vesicle translocation in adipocytes (PMID:26299925), is required for insulin secretion and expression of exocytotic machinery components (Vamp2, Glut2, Pdx1) in pancreatic β-cells (PMID:35336762), and interacts with post-translationally modified STAT3 to direct its translocation into multivesicular endosomes for secretion, thereby modulating ERK1/2 and GSK3β signaling in embryonic stem cell self-renewal (PMID:39475099). EXOC6B is essential for primary ciliogenesis downstream of its vesicle-tethering function; biallelic loss-of-function variants in humans abrogate exocytosis and impair cilia formation, and knockdown in prechondrocytes attenuates Hedgehog signaling and disrupts chondrogenic differentiation (PMID:36150098, PMID:38305850).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2001 Medium

    Identification of EXOC6B (KIAA0919) as a second mammalian Sec15 homologue within the brain exocyst complex established it as a bona fide exocyst subunit regulated by the small GTPase RalA.

    Evidence GTP-loaded RalA pulldown from rat brain extracts followed by MALDI-TOF MS identification of exocyst subunits including KIAA0919

    PMID:11406615

    Open questions at the time
    • No direct binding assay between RalA and EXOC6B specifically (pulled down as part of whole complex)
    • Functional consequence of RalA–exocyst interaction for EXOC6B-dependent trafficking not tested
  2. 2015 Medium

    Demonstrating that Rab10-GTP directly binds EXOC6B and that its depletion inhibits GLUT4 translocation answered how insulin signaling engages the exocyst, identifying a specific GTPase–effector link for regulated exocytosis in adipocytes.

    Evidence Co-immunoprecipitation/pulldown with GTP-state specificity; siRNA knockdown of Exoc6/Exoc6b with GLUT4 translocation assay in 3T3-L1 adipocytes

    PMID:26299925

    Open questions at the time
    • Structural basis of Rab10–EXOC6B interaction unresolved
    • Relative contributions of EXOC6 versus EXOC6B to GLUT4 trafficking in vivo not delineated
  3. 2022 Medium

    Showing that biallelic EXOC6B loss-of-function in human patient fibroblasts abrogates exocytosis and primary ciliogenesis established that exocyst-mediated vesicle tethering is required for cilia assembly and linked EXOC6B deficiency to a developmental phenotype.

    Evidence Patient-derived fibroblasts with biallelic EXOC6B variants; functional assays for exocytosis, ciliogenesis, and gene expression profiling for osteogenesis/ECM pathways

    PMID:36150098

    Open questions at the time
    • Rescue experiment to confirm causality of EXOC6B variants not reported
    • Which specific vesicle cargo is required for ciliogenesis downstream of EXOC6B remains unknown
  4. 2022 Medium

    Demonstrating that Exoc6/Exoc6b knockdown in pancreatic β-cells impairs insulin secretion, insulin content, and expression of key exocytosis genes extended the exocytotic role of EXOC6B beyond adipocytes to endocrine cells.

    Evidence siRNA knockdown in INS1-832/13 cells; insulin secretion assays; RT-qPCR and Western blot for Ins1/2, Pdx1, Glut2, Vamp2

    PMID:35336762

    Open questions at the time
    • Combined Exoc6/6b knockdown makes individual contribution of EXOC6B uncertain
    • In vivo β-cell phenotype of EXOC6B loss not assessed
  5. 2024 Medium

    Localizing EXOC6B to the ciliary base and showing that its depletion blocks both ciliogenesis and Hedgehog signaling in prechondrocytes defined a mechanism linking exocyst-dependent vesicle delivery to cilium-dependent developmental signaling during chondrogenesis.

    Evidence shRNA knockdown in ATDC5 cells; immunocytochemistry for ciliary-base localization; RT-qPCR/immunoblotting for Hedgehog and chondrogenic markers

    PMID:38305850

    Open questions at the time
    • Direct cargo delivered by EXOC6B to the ciliary base not identified
    • Whether Hedgehog signaling defect is solely secondary to cilia loss or involves additional EXOC6B-dependent trafficking not resolved
  6. 2024 Medium

    Discovering that EXOC6B binds acetylated/phosphorylated STAT3 to mediate its sorting into multivesicular endosomes for secretion revealed a non-canonical exocyst function in signal transduction, linking EXOC6B to ERK1/2 and GSK3β regulation and embryonic stem cell self-renewal.

    Evidence Co-immunoprecipitation of STAT3 with Sec15b; site-directed mutagenesis (K177R/K180R, Y293F); live-cell imaging and fractionation for MVE localization; Sec15b knockout mice; genetic rescue

    PMID:39475099

    Open questions at the time
    • Whether STAT3–EXOC6B interaction occurs independently of the full exocyst complex is unclear
    • In vivo phenotype of Sec15b knockout mice beyond mESC self-renewal not fully described
    • Whether MVE-mediated STAT3 secretion operates in somatic cell types is unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis of EXOC6B's selective interactions with Rab10, STAT3, and other cargo adaptors, the identity of the vesicle cargoes it delivers to the ciliary base, and the in vivo developmental consequences of EXOC6B loss in mammalian models remain to be determined.
  • No high-resolution structure of EXOC6B or its complexes with partners
  • In vivo conditional knockout phenotypes in skeletal and neuronal tissues not characterized
  • Functional redundancy between EXOC6 and EXOC6B not systematically addressed

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005886 plasma membrane 2 GO:0005929 cilium 2 GO:0005768 endosome 1 GO:0031410 cytoplasmic vesicle 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 4 R-HSA-162582 Signal Transduction 3 R-HSA-1266738 Developmental Biology 2
Complex memberships
exocyst complex

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2015 Rab10 in its GTP-bound form directly binds to Exoc6 and Exoc6b (the two highly homologous isotypes of an exocyst subunit); knockdown of Exoc6, Exoc6b, or both inhibits GLUT4 translocation in 3T3-L1 adipocytes, suggesting that Rab10-GTP association with Exoc6/6b is a molecular link between insulin signaling and the exocytic machinery. Co-immunoprecipitation / pulldown of Rab10-GTP with Exoc6/Exoc6b; siRNA knockdown of Exoc6, Exoc6b, or both with GLUT4 translocation readout in 3T3-L1 adipocytes Biochemical and biophysical research communications Medium 26299925
2001 The brain exocyst complex (including rSec6 and rSec8, and identifying KIAA0919 as a second mammalian Sec15 homologue) binds RalA in a GTP-dependent manner in nerve terminals, placing RalA upstream of the exocyst as a regulator of exocytosis sites in mammalian neurons. Pulldown of brain proteins with GTP-loaded RalA followed by MALDI-TOF MS identification; Western blot confirmation of rSec6 and rSec8 binding to active RalA The Journal of biological chemistry Medium 11406615
2022 Biallelic loss-of-function variants in EXOC6B abrogate exocytosis in patient-derived fibroblasts, leading to impaired primary ciliogenesis, as well as reduced osteogenesis differentiation and extracellular matrix-related pathways, establishing EXOC6B as essential for ciliogenesis downstream of its vesicle-tethering function. Patient fibroblast cell lines with biallelic EXOC6B variants; functional assays for exocytosis and primary ciliogenesis; gene expression profiling for osteogenesis/ECM pathways Human mutation Medium 36150098
2024 Exoc6b localizes to the perinuclear region and the base of primary cilia in ATDC5 prechondrocytes; shRNA knockdown of Exoc6b impedes primary ciliogenesis, attenuates Hedgehog signaling (including upon Smoothened agonist stimulation), and disrupts markers of chondrocyte proliferation (Col2a1, Ihh) and hypertrophy (Col10a1, Mmp13, Adamts4, Bglap) during chondrogenic differentiation. shRNA lentiviral knockdown; immunocytochemistry for localization; RT-qPCR and immunoblotting for pathway markers; Alizarin Red staining for ECM mineralization Molecular biology reports Medium 38305850
2022 Exoc6/Exoc6b silencing in rat pancreatic β-cells (INS1-832/13) impairs insulin secretion, insulin content, exocytosis machinery, and glucose uptake, with decreased mRNA/protein levels of Ins1, Ins2, Pdx1, Glut2, and Vamp2, establishing Exoc6b as a component required for β-cell exocytosis. siRNA knockdown of Exoc6/6b in INS1-832/13 cells; insulin secretion assay; RT-qPCR and Western blot for exocytosis markers Biology Medium 35336762
2024 EXOC6B (Sec15b) interacts with STAT3 acetylated on K177/K180 and phosphorylated on Y293 in mouse embryonic stem cells; this interaction mediates STAT3 translocation into multivesicular endosomes (MVEs) and subsequent secretion, which downregulates ERK1/2 phosphorylation and upregulates GSK3β phosphorylation to maintain mESC self-renewal. Co-immunoprecipitation of STAT3 with Sec15b; site-directed mutagenesis (K177R/K180R, Y293F); live-cell imaging and fractionation for MVE localization; Sec15b knockout mice; genetic rescue experiments Advanced science Medium 39475099
2013 EXOC6B haploinsufficiency in patient lymphoblasts (from 2p13.2 microdeletion) results in perturbed expression of Notch signaling pathway genes HES1 and RBPJ, placing EXOC6B upstream of Notch signaling in a cellular context. Expression analysis in patient-derived lymphoblasts by RT-PCR/quantitative PCR for HES1 and RBPJ; comparison with controls Orphanet journal of rare diseases Low 23837398

Source papers

Stage 0 corpus · 29 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. The Plant cell 215 18492870
2010 The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation. The Plant cell 140 20870962
2001 The brain exocyst complex interacts with RalA in a GTP-dependent manner: identification of a novel mammalian Sec3 gene and a second Sec15 gene. The Journal of biological chemistry 119 11406615
1999 Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA research : an international journal for rapid publication of reports on genes and genomes 111 10231032
2017 SCD1 and SCD2 Form a Complex That Functions with the Exocyst and RabE1 in Exocytosis and Cytokinesis. The Plant cell 57 28970336
2015 A potential link between insulin signaling and GLUT4 translocation: Association of Rab10-GTP with the exocyst subunit Exoc6/6b. Biochemical and biophysical research communications 32 26299925
2022 The short inverted repeats-induced circEXOC6B inhibits prostate cancer metastasis by enhancing the binding of RBMS1 and HuR. Molecular therapy : the journal of the American Society of Gene Therapy 27 35974702
2013 Phenotypic and functional consequences of haploinsufficiency of genes from exocyst and retinoic acid pathway due to a recurrent microdeletion of 2p13.2. Orphanet journal of rare diseases 23 23837398
2009 Genomic and geographic distribution of private SNPs and pathways in human populations. Personalized medicine 22 20352079
2016 Responses to crizotinib in patients with ALK-positive lung adenocarcinoma who tested immunohistochemistry (IHC)-positive and fluorescence in situ hybridization (FISH)-negative. Oncotarget 20 27418132
2014 Mosaic deletion of EXOC6B: further evidence for an important role of the exocyst complex in the pathogenesis of intellectual disability. American journal of medical genetics. Part A 20 25256811
2013 Disruption of EXOC6B in a patient with developmental delay, epilepsy, and a de novo balanced t(2;8) translocation. European journal of human genetics : EJHG 20 23422942
2008 Cytogenetic and molecular characterization of a de-novo t(2p;7p) translocation involving TNS3 and EXOC6B genes in a boy with a complex syndromic phenotype. European journal of medical genetics 19 18424204
2015 A novel multiple joint dislocation syndrome associated with a homozygous nonsense variant in the EXOC6B gene. European journal of human genetics : EJHG 17 26669664
2022 Biallelic loss-of-function variants in EXOC6B are associated with impaired primary ciliogenesis and cause spondylo-epi-metaphyseal dysplasia with joint laxity type 3. Human mutation 7 36150098
2022 EXOC6 (Exocyst Complex Component 6) Is Associated with the Risk of Type 2 Diabetes and Pancreatic β-Cell Dysfunction. Biology 6 35336762
2023 A Multibreed Genome-Wide Association Study for Cattle Leukocyte Telomere Length. Genes 5 37628647
2021 A genome-wide association study (GWAS) for pH value in the meat of Berkshire pigs. Journal of animal science and technology 5 33987581
2016 Exome Array Analysis of Susceptibility to Pneumococcal Meningitis. Scientific reports 5 27389768
2022 Diversification of SEC15a and SEC15b isoforms of an exocyst subunit in seed plants is manifested in their specific roles in Arabidopsis sporophyte and male gametophyte. The Plant journal : for cell and molecular biology 4 35306706
2013 Functional characterisation of human cells harbouring a novel t(2p;7p) translocation involving TNS3 and EXOC6B genes. BMC medical genetics 4 23809228
2022 Comprehensive evaluation of circRNAs in cirrhotic cardiomyopathy before and after liver transplantation. International immunopharmacology 3 36462338
2026 Genetic regulation of fatty acid content in adipose tissue. American journal of human genetics 2 41534528
2024 Genome-wide comparative analyses highlight selection signatures underlying saline adaptation in Chilika buffalo. Physiological genomics 2 38949516
2024 LIF Promotes Sec15b-Mediated STAT3 Exosome Secretion to Maintain Stem Cell Pluripotency in Mouse Embryonic Development. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 2 39475099
2024 Early insights into the role of Exoc6B associated with spondyloepimetaphyseal dysplasia with joint laxity type 3 in primary ciliogenesis and chondrogenic differentiation in vitro. Molecular biology reports 1 38305850
2024 Genetic and allelic heterogeneity in 248 Indians with skeletal dysplasia. European journal of human genetics : EJHG 1 39706863
2026 Genomic analysis of the Ixworth chicken: insights into a local dual-purpose breed. BMC genomics 0 41814148
2024 The association between circulating CD34+CD133+ endothelial progenitor cells and reduced risk of Alzheimer's disease in the Framingham Heart Study. Exploration of medicine 0 38854406