Affinage

EMC7

Endoplasmic reticulum membrane protein complex subunit 7 · UniProt Q9NPA0

Length
242 aa
Mass
26.5 kDa
Annotated
2026-06-09
10 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EMC7 is a constitutive subunit of the conserved ER membrane complex (EMC), an eight-subunit transmembrane-domain insertase of the endoplasmic reticulum (PMID:32494008). Within the complex, EMC7 contributes to an assembly centered on a five-TMH fold resembling the prokaryotic YidC insertase that forms a hydrophilic client pocket for inserting transmembrane helices into the ER membrane (PMID:32494008). Beyond its structural role in the EMC, EMC7 acts as a molecular tether at late endosome–ER membrane contact sites: it engages LE-associated Rab7 and binds the ER-resident fusion machinery component syntaxin18, thereby promoting LE-to-ER cargo targeting, as demonstrated for the entry of SV40 polyomavirus (PMID:32111841). Beyond these roles, the broader functional repertoire of EMC7 has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2011 Low

    An early question was where the uncharacterized C15orf24 (EMC7) protein resides in tissue; immunolocalization placed it at the postsynaptic sarcolemma of the neuromuscular junction, giving a first anatomical foothold.

    Evidence Antibody generation and immunolocalization at murine neuromuscular junction sections

    PMID:21429463

    Open questions at the time
    • Single localization experiment with no functional consequence established
    • No molecular activity or interaction partner defined
    • Does not connect the protein to any pathway
  2. 2013 Low

    To find candidate interactors, a split-ubiquitin screen identified the Na+/Mg2+ exchanger SLC41A1 as a transient ER-context binding partner of EMC7, hinting at an ER membrane role.

    Evidence Split-ubiquitin yeast two-hybrid assay

    PMID:23823179

    Open questions at the time
    • Single method (yeast two-hybrid) not confirmed by mass spectrometry or reciprocal co-IP
    • Interaction described as transient, functional significance unclear
    • Does not establish whether the interaction reflects EMC client handling
  3. 2020 High

    The molecular function of EMC7 was resolved by placing it within the EMC: cryo-EM showed it is one of eight subunits of a transmembrane-domain insertase whose YidC-like fold creates a hydrophilic pocket for TMH insertion into the ER membrane.

    Evidence Cryo-EM structure of the yeast EMC with mutational validation of client-pocket hydrophilicity and Emc4 flexibility

    PMID:32494008

    Open questions at the time
    • Structure does not define the specific contribution of EMC7 to client insertion
    • Substrate repertoire handled with EMC7 participation not enumerated
    • Human EMC7 inferred from yeast complex architecture
  4. 2020 Medium

    A distinct, EMC-independent role emerged when EMC7 was shown to tether late endosomes to the ER by binding Rab7 and syntaxin18, enabling LE-to-ER cargo transport exploited during SV40 entry.

    Evidence Knockdown with SV40 infection assays, co-immunoprecipitation of EMC7 with Rab7 and syntaxin18, and organelle transport assays

    PMID:32111841

    Open questions at the time
    • Co-IP partners identified in a single lab without reciprocal structural validation of the tether
    • Whether tethering activity is separable from EMC subunit function is unresolved
    • Generality beyond SV40 cargo not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the EMC insertase activity of EMC7 relates mechanistically to its endosome-ER tethering role, and whether both functions operate simultaneously in the same cells, remains unresolved.
  • No structural model of the EMC7-Rab7-syntaxin18 tether
  • Native client substrates of the human EMC requiring EMC7 not defined
  • Functional significance of NMJ localization and SLC41A1 interaction unintegrated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 1 GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005783 endoplasmic reticulum 2 GO:0005768 endosome 1
Pathway
R-HSA-392499 Metabolism of proteins 1 R-HSA-5653656 Vesicle-mediated transport 1
Complex memberships
ER membrane complex (EMC)

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 Cryo-EM structure of the yeast ER membrane complex (EMC) revealed that Emc7 is one of eight subunits (Emc1-6, Emc7, Emc10) forming the complex, with a large lumenal region, smaller cytosolic region, and a transmembrane region. The complex contains a five-TMH fold centered around Emc3 resembling the prokaryotic YidC insertase, delineating a hydrophilic client protein pocket required for TMH insertion into the ER membrane. Cryo-electron microscopy structure determination with mutational studies validating functional requirements (Emc4 flexibility and hydrophilicity of client pocket) Nature High 32494008
2020 EMC7 (together with EMC4) functions as a molecular tether connecting late endosomes (LE) to the ER by engaging LE-associated Rab7, thereby promoting LE-to-ER targeting of SV40 polyomavirus during viral entry. EMC7 also binds the ER-resident fusion machinery component syntaxin18, which is required for SV40 arrival at the ER. Functional knockdown experiments with SV40 infection assays, co-immunoprecipitation of EMC7 with Rab7 and syntaxin18, organelle transport assays Nature Communications Medium 32111841
2011 C15orf24 (EMC7) protein localizes to the murine postsynaptic sarcolemma of the neuromuscular junction, as demonstrated by antibody staining of murine NMJ sections. Antibody generation against C15orf24 and immunolocalization at murine neuromuscular junction Marine genomics Low 21429463
2013 UPF0480 protein C15orf24 (EMC7) was identified as a binding partner of the Na+/Mg2+ exchanger SLC41A1 in a split-ubiquitin yeast two-hybrid assay, suggesting a transient interaction in the ER context. Split-ubiquitin yeast two-hybrid assay Magnesium research Low 23823179

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Structure of the ER membrane complex, a transmembrane-domain insertase. Nature 110 32494008
2015 The ubiquitous and ancient ER membrane protein complex (EMC): tether or not? F1000Research 76 26512320
2021 NUT Is a Specific Immunohistochemical Marker for the Diagnosis of YAP1-NUTM1-rearranged Cutaneous Poroid Neoplasms. The American journal of surgical pathology 60 33739783
2020 Selective EMC subunits act as molecular tethers of intracellular organelles exploited during viral entry. Nature communications 22 32111841
2015 The Orthology Clause in the Next Generation Sequencing Era: Novel Reference Genes Identified by RNA-seq in Humans Improve Normalization of Neonatal Equine Ovary RT-qPCR Data. PloS one 18 26536597
2024 Licochalcone A induces endoplasmic reticulum stress-mediated apoptosis of endometrial cancer cells via upregulation of GRP78 expression. Environmental toxicology 8 38308464
2013 Nature of SLC41A1 complexes: report on the split-ubiquitin yeast two hybrid assay. Magnesium research 8 23823179
2011 Evolution and comparative genomics of subcellular specializations: EST sequencing of Torpedo electric organ. Marine genomics 5 21429463
2024 Identification of genetic variants associated with clinical features of sickle cell disease. Scientific reports 4 39209956
2025 Leclercia barmai sp. nov., isolated from worm castings of Eisenia fetida, is a urease-positive, 3-nitropropionic acid and glycerol-consuming bacterium. Scientific reports 0 39955304

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