Affinage

EFR3B

Protein EFR3 homolog B · UniProt Q9Y2G0

Length
817 aa
Mass
92.5 kDa
Annotated
2026-06-09
15 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EFR3B is a palmitoylated peripheral plasma membrane protein that serves as the membrane anchor recruiting the lipid kinase PI4KA to the plasma membrane, where it governs phosphoinositide homeostasis (PMID:34663815, PMID:39705356). It does so as a component of the plasma membrane PI4KA complex containing PI4KA, TTC7B, and FAM126A, with its C-terminus undergoing a disorder-to-order transition upon binding to make direct contacts with both TTC7B and FAM126A; complex-disrupting mutations in EFR3, TTC7B, or FAM126A reduce PI4KA recruitment to the plasma membrane (PMID:39705356). This recruitment is regulated by two layers of post-translational control: differential palmitoylation of a tri-cysteine motif (Cys5/Cys7/Cys8) creates distinct lipoforms that control both EFR3B partitioning between liquid-ordered and liquid-disordered membrane domains and its interaction with TMEM150A to tune PI(4,5)P2 resynthesis after PLC signaling (PMID:34569608), and phosphorylation of EFR3B markedly decreases its affinity for TTC7–FAM126, providing a switch that downregulates PI4KA membrane recruitment (PMID:41197736). Through control of plasma membrane phosphoinositide signaling, EFR3B (with EFR3A) contributes to the desensitization and phosphorylation state of AT1a angiotensin receptors and the sustained Ca2+ response to angiotensin II (PMID:25380825). In the brain, EFR3B acts cell-autonomously to maintain the excitability of CA2 hippocampal pyramidal neurons required for social novelty recognition (PMID:38190534).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2014 Medium

    Established a cellular function for EFR3 proteins in GPCR signaling, showing they constrain receptor desensitization rather than acting as inert membrane proteins.

    Evidence siRNA double-knockdown of EFR3A/EFR3B with Ca2+, receptor phosphorylation, and Gq desensitization readouts in HEK293 cells

    PMID:25380825

    Open questions at the time
    • Did not resolve the molecular intermediary linking EFR3 to receptor phosphorylation state
    • Redundancy between EFR3A and EFR3B not dissected
    • Direct binding partners not identified
  2. 2021 High

    Placed EFR3B within the plasma membrane PI4KA complex and linked its assembly to palmitoylation and to calcineurin-mediated dephosphorylation of FAM126A, defining a regulated lipid-kinase recruitment module.

    Evidence Palmitoylation-dependent Co-IP, HDX-MS, calcineurin substrate assay, and PI4P production measurement during GPCR signaling

    PMID:34663815

    Open questions at the time
    • Structural basis of EFR3B contacts within the complex not yet resolved
    • Did not establish EFR3B's own phosphoregulation
  3. 2021 High

    Demonstrated that differential palmitoylation of an EFR3B tri-cysteine motif encodes distinct lipoforms controlling membrane-domain partitioning and TMEM150A interaction, connecting lipid modification to PI(4,5)P2 resynthesis.

    Evidence Mutagenesis of palmitoylation sites, Co-IP with TMEM150A, membrane partitioning and phosphoinositide homeostasis assays

    PMID:34569608

    Open questions at the time
    • Enzymes setting the differential palmitoylation pattern not identified
    • Quantitative coupling between lipoform and downstream PI4P output not fully defined
  4. 2024 High

    Resolved the structural mechanism of recruitment, showing the EFR3 C-terminus folds upon binding to contact both TTC7B and FAM126A and that interface mutations reduce PI4KA membrane targeting.

    Evidence Cryo-EM, HDX-MS, mutational interface analysis, and plasma membrane recruitment assays (peer-reviewed PMID:39705356; preprint PMID:38746453)

    PMID:38746453 PMID:39705356

    Open questions at the time
    • Structural work conducted largely on EFR3A with extension to EFR3B by homology
    • Does not address how palmitoylation modulates the ordered C-terminal contact
  5. 2024 High

    Defined a cell-autonomous in vivo role for EFR3B in maintaining CA2 pyramidal neuron excitability and social novelty recognition, linking the molecular module to a circuit-level behavior.

    Evidence Conditional knockout, region-specific knockdown, re-expression rescue, chemogenetic activation, electrophysiology and behavioral testing in mouse

    PMID:38190534

    Open questions at the time
    • Did not directly tie the behavioral phenotype to PI4KA/phosphoinositide signaling in CA2 neurons
    • Effector channels or pathways downstream of EFR3B in CA2 neurons unidentified
  6. 2025 High

    Identified phosphorylation of EFR3B as a regulatory switch that lowers its affinity for TTC7–FAM126, and quantified isoform-specific binding hierarchies governing PI4KA recruitment strength.

    Evidence Binding affinity measurements across EFR3/TTC7/FAM126 combinations, phosphorylation assays, cryo-EM, HDX-MS, nanobody competition, and bilayer/cell-based PI4P assays

    PMID:41197736

    Open questions at the time
    • Kinase(s) phosphorylating EFR3B in vivo not identified
    • Physiological context where this switch operates not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How EFR3B's palmitoylation-, phosphorylation-, and TMEM150A-dependent regulation of PI4KA is integrated to produce the neuronal excitability and behavioral phenotypes remains unresolved.
  • No demonstration that phosphoinositide signaling underlies the CA2 excitability defect
  • Tissue-specific upstream regulators of EFR3B modification unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0008289 lipid binding 2
Localization
GO:0005886 plasma membrane 4
Pathway
R-HSA-1430728 Metabolism 2 R-HSA-112316 Neuronal System 1 R-HSA-162582 Signal Transduction 1
Complex memberships
PI4KA-TTC7B-FAM126A complex

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 EFR3B (and EFR3A) are palmitoylated plasma membrane proteins; siRNA-mediated depletion of both EFR3A and EFR3B impaired the sustained phase of cytosolic Ca2+ response to angiotensin II (AngII) in HEK293 cells, and caused higher basal receptor phosphorylation and faster Gq desensitization after AngII stimulation, suggesting Efr3s contribute to controlling the phosphorylation state and desensitization of AT1a receptors. siRNA knockdown, cytosolic Ca2+ measurements, GPCR phosphorylation assays, Gq activation assays in HEK293 cells Journal of cell science Medium 25380825
2021 EFR3B is a component of the plasma membrane PI4KA (PI4KIIIα) complex (containing PI4KA, TTC7B, and FAM126A); palmitoylation of CNAβ1 recruits it to this complex, and calcineurin dephosphorylates FAM126A to promote PI4KA complex activity. Palmitoylation-dependent co-immunoprecipitation, hydrogen-deuterium exchange mass spectrometry, calcineurin substrate assay, PI4P production measurement during GPCR signaling Nature communications High 34663815
2021 A tri-cysteine motif (Cys5, Cys7, Cys8) in EFR3B is differentially palmitoylated, creating distinct 'lipoforms'; spacing of palmitoyl groups controls (1) interaction between EFR3B and TMEM150A (a transmembrane protein governing PI4KIIIα complex formation for PI(4,5)P2 resynthesis after PLC signaling), and (2) EFR3B partitioning between liquid-ordered and liquid-disordered plasma membrane regions. Mutagenesis of palmitoylation sites, co-immunoprecipitation with TMEM150A, membrane domain partitioning assays, phosphoinositide homeostasis measurements Journal of cell science High 34569608
2024 The C-terminus of EFR3A (and by extension EFR3B as a homolog) undergoes a disorder-to-order transition upon binding to the PI4KA-TTC7B-FAM126A complex, making direct contacts with both TTC7B and FAM126A; complex-disrupting mutations in TTC7B, FAM126A, and EFR3 decrease PI4KA recruitment to the plasma membrane. Cryo-EM structure determination, hydrogen-deuterium exchange mass spectrometry, mutational analysis of binding interface, plasma membrane recruitment assays Science advances High 39705356
2025 EFR3B phosphorylation markedly decreases its binding affinity to TTC7-FAM126, thereby reducing PI4KA recruitment to the plasma membrane; EFR3A-TTC7B-FAM126A binds with ~10-fold higher affinity than most other EFR3-TTC7-FAM126 combinations. Binding affinity measurements across EFR3 isoform and TTC7/FAM126 combinations, phosphorylation assays, cryo-EM, HDX-MS, nanobody competition assay, lipid bilayer and cell-based PI4P production assays The Journal of biological chemistry High 41197736
2024 Conditional knockout of Efr3b in mouse brain (Nestin-cre) leads to hypoexcitability of CA2 pyramidal neurons and deficits in social novelty recognition; knockdown specifically in CA2 PNs recapitulates this phenotype, and re-expression of Efr3b in CA2 PNs restores excitability and social behavior, demonstrating a cell-autonomous role for Efr3b in regulating CA2 PN excitability. Conditional knockout (Nestin-cre x Efr3bf/f), region-specific knockdown, Efr3b re-expression rescue, chemogenetic (DREADD) activation, behavioral testing (social novelty recognition), electrophysiology of CA2 pyramidal neurons Proceedings of the National Academy of Sciences of the United States of America High 38190534
2024 EFR3B (via its C-terminus, studied as EFR3A ortholog) recruits PI4KA to the plasma membrane by binding the PI4KA-TTC7B-FAM126A complex; this is the preprint version of the same cryo-EM/HDX-MS/mutagenesis study later published in Science Advances. Cryo-EM, HDX-MS, mutational analysis bioRxivpreprint High 38746453

Source papers

Stage 0 corpus · 15 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. PLoS genetics 261 21980299
2014 EFR3s are palmitoylated plasma membrane proteins that control responsiveness to G-protein-coupled receptors. Journal of cell science 44 25380825
2021 Palmitoylation targets the calcineurin phosphatase to the phosphatidylinositol 4-kinase complex at the plasma membrane. Nature communications 42 34663815
2021 A palmitoylation code controls PI4KIIIα complex formation and PI(4,5)P2 homeostasis at the plasma membrane. Journal of cell science 21 34569608
2024 Molecular basis for plasma membrane recruitment of PI4KA by EFR3. Science advances 13 39705356
2024 Efr3b is essential for social recognition by modulating the excitability of CA2 pyramidal neurons. Proceedings of the National Academy of Sciences of the United States of America 10 38190534
2019 Type 1 diabetes loci display a variety of native American and African ancestries in diseased individuals from Northwest Colombia. World journal of diabetes 5 31798789
2024 IMPC-based screening revealed that ROBO1 can regulate osteoporosis by inhibiting osteogenic differentiation. Frontiers in cell and developmental biology 3 39439909
2026 Common variation at 1q23.3, 2p23.3, 2q33.3, and 2p21 influences the risk of acute myeloid leukemia. Blood 2 41610418
2024 Cross-Tissue Regulatory Network Analyses Reveal Novel Susceptibility Genes and Potential Mechanisms for Endometriosis. Biology 2 39596826
2024 Molecular basis for plasma membrane recruitment of PI4KA by EFR3. bioRxiv : the preprint server for biology 1 38746453
2025 A Potential Role of EFR3A in Human Disease States. Biomolecules 0 40305161
2025 The related SNPs and genes to body size using GWAS- latent variable modeling in dromedaries. BMC genomics 0 40629317
2025 Development of an inhibitory TTC7B selective nanobody that blocks EFR3 recruitment of PI4KA. The Journal of biological chemistry 0 41197736
2025 Development of an inhibitory TTC7B selective nanobody that blocks EFR3 recruitment of PI4KA. bioRxiv : the preprint server for biology 0 41473329

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