Affinage

DSN1

Kinetochore-associated protein DSN1 homolog · UniProt Q9H410

Length
356 aa
Mass
40.1 kDa
Annotated
2026-06-09
11 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DSN1 is a core subunit of the MIS12 (Mis12c) kinetochore complex that bridges the inner centromere to the outer microtubule-binding machinery during mitosis [PMID:bio_10.1101_2025.06.03.657598]. Structurally, its N-terminal auto-inhibitory segment folds into two α-helices that engage the Mis12c head and occlude the binding sites for inner kinetochore subunits CENP-C (Mif2) and CENP-U (Ame1); Aurora B (Ipl1) phosphorylation of this segment relieves the auto-inhibition to strengthen inner-outer kinetochore connections, while C-terminal α-helical motifs of Dsn1 together with Mis12 and Nnf1 bind Knl1c and Ndc80c to assemble the KMN network [PMID:bio_10.1101_2025.06.03.657598]. DSN1 phosphorylation also cooperates with CENP-T phosphorylation to support a CENP-T–Mis12c interaction that ensures proper mitotic progression [PMID:bio_10.1101_2024.06.20.599825]. A germline-specific alternative splice isoform lacks the regulatory region required for Aurora kinase phosphorylation, producing constitutive centromere localization; ectopic somatic expression of this isoform causes chromosome segregation errors, and its elimination in mice disrupts oocyte maturation, early embryonic divisions, and fertility (PMID:39178843). DSN1 abundance is controlled at multiple levels: the Mub1/Ubr2 ubiquitin ligase ubiquitylates aberrant Dsn1 for proteasomal degradation as a quality-control mechanism (PMID:23408894), ESRRA directly activates DSN1 transcription upstream of a CDC25C–CDK1–Cyclin B1 axis (PMID:34131395), and METTL3-dependent m6A marks on DSN1 mRNA are read by SRSF9 to stabilize the transcript (PMID:35509101). In cancer cells DSN1 additionally stabilizes c-MYC by competing with FZR1 for binding, thereby attenuating FZR1-mediated c-MYC ubiquitination (PMID:41713835).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2013 High

    Established that Dsn1 protein levels are actively policed at the kinetochore, identifying a ubiquitin-dependent quality control route for aberrant subunit.

    Evidence Kinetochore particle purification, Co-IP/mass spectrometry, and ubiquitylation assays with genetic deletion rescue in yeast

    PMID:23408894

    Open questions at the time
    • Does not define which structural features of Dsn1 mark it as aberrant
    • Mammalian conservation of Mub1/Ubr2-mediated control not addressed
  2. 2021 Medium

    Identified ESRRA as a direct transcriptional activator of DSN1, placing DSN1 upstream of the CDC25C–CDK1–Cyclin B1 G2/M control axis.

    Evidence ChIP, dual-luciferase promoter assay, RNA-seq and flow cytometry with ESRRA knockdown

    PMID:34131395

    Open questions at the time
    • Single lab
    • Mechanistic link between DSN1 and CDC25C-CDK1-CyclinB1 not biochemically resolved
  3. 2022 Medium

    Defined post-transcriptional control of DSN1 by an m6A-reader mechanism, explaining how DSN1 transcript stability is set.

    Evidence m6A affinity and qRT-PCR, RNA stability assays, dual-luciferase reporters with METTL3 knockdown

    PMID:35509101

    Open questions at the time
    • Single lab
    • Physiological/disease context of SRSF9-DSN1 regulation not established
  4. 2024 High

    Showed that a germline-specific DSN1 splice isoform bypasses Aurora-dependent regulation, linking DSN1 phospho-regulation to mammalian fertility and chromosome segregation fidelity.

    Evidence Alternative splice identification, live-cell imaging, somatic overexpression phenotyping, and mouse knockout of the germline isoform

    PMID:38659852 PMID:39178843

    Open questions at the time
    • Why germline cells require phosphorylation-independent localization is unresolved
    • Structural basis of isoform behavior not directly determined
  5. 2024 Medium

    Established an alternative CENP-T–Mis12c attachment route co-regulated by Dsn1 and CENP-T phosphorylation, complementing the CENP-C-dependent pathway.

    Evidence AlphaFold2-guided mutagenesis and viability/binding assays in DT40 cells lacking CENP-C–Mis12c interaction

    PMID:bio_10.1101_2024.06.20.599825

    Open questions at the time
    • Preprint, single lab
    • Relative contribution of CENP-T versus CENP-C pathways in normal cells not quantified
  6. 2024 Low

    Reported a direct DSN1–CENPT interaction driving cell-cycle protein overproduction and chromosomal instability in hepatocellular carcinoma, suggesting an oncogenic dimension to DSN1 function.

    Evidence siRNA/shRNA knockdown, overexpression, co-immunoprecipitation, and xenograft model in HCC cells

    PMID:39560395

    Open questions at the time
    • Interaction inferred with limited mechanistic detail; no structural or reconstitution data
    • Single lab
  7. 2025 High

    Provided the structural mechanism of DSN1 auto-inhibition, showing how its N-terminal segment occludes CENP-C/CENP-U binding until Aurora B phosphorylation licenses kinetochore assembly.

    Evidence Cryo-EM of the budding yeast KMN complex with biochemical binding and genetic validation

    PMID:bio_10.1101_2025.06.03.657598

    Open questions at the time
    • Preprint
    • Human KMN structural confirmation not provided
    • Dynamics of phosphorylation-triggered release not directly visualized
  8. 2026 Medium

    Defined a non-kinetochore moonlighting role in which DSN1 stabilizes c-MYC by competing with FZR1, linking DSN1 to oncogenic protein homeostasis.

    Evidence Cycloheximide chase, proteasome inhibition, Co-IP, c-MYC rescue, and in vivo metastasis assays

    PMID:41713835

    Open questions at the time
    • Single lab
    • Whether this function depends on or is separable from kinetochore DSN1 is unknown
    • Structural basis of DSN1-FZR1 competition undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How DSN1's canonical kinetochore role mechanistically connects to its proposed oncogenic functions (CENPT-driven instability, c-MYC stabilization) remains unresolved.
  • No reconstitution distinguishing kinetochore versus cytoplasmic DSN1 pools
  • Human structural data for auto-inhibition lacking
  • Causality of DSN1 in human tumorigenesis not established by genetic models

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2 GO:0005198 structural molecule activity 1
Localization
GO:0005694 chromosome 2
Pathway
R-HSA-1640170 Cell Cycle 3
Complex memberships
KMN networkMIS12 complex (Mis12c)kinetochore

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 The Mub1/Ubr2 ubiquitin ligase complex associates with kinetochore particles through CENP-C (Mif2) and regulates the levels of yeast Dsn1 via ubiquitylation; deletion of Mub1/Ubr2 restores levels of a mutant Dsn1, indicating a quality control mechanism that targets aberrant Dsn1 for proteasomal degradation. Kinetochore particle purification, Co-IP/mass spectrometry, genetic deletion analysis, ubiquitylation assays PLoS genetics High 23408894
2024 Mammalian germ cells express a germline-specific alternative splice isoform of DSN1 that lacks a key regulatory region required for Aurora kinase phosphorylation, resulting in constitutive centromere/kinetochore localization independent of Aurora B phosphorylation. Expression of this isoform in somatic cells causes constitutive kinetochore localization, chromosome segregation errors, and growth defects. Precise elimination of this germline isoform in mice disrupts oocyte maturation, early embryonic divisions, and reduces fertility. Alternative splicing identification, live-cell imaging, mouse genetic knockout of germline isoform, cell-based overexpression assays, Aurora kinase phosphorylation analysis Current biology : CB High 39178843
2024 A germline-specific DSN1 splice isoform (preprint version of the same study) bypasses Aurora kinase phosphorylation requirement for centromere localization; somatic expression causes constitutive kinetochore localization and chromosome segregation errors; germline isoform knockout in mice impairs oocyte maturation and early embryo divisions. Mouse genetic models, cell-based expression assays, live-cell imaging bioRxivpreprint Medium 38659852
2025 Cryo-EM structures of the budding yeast KMN complex reveal that the N-terminal auto-inhibitory segment of Dsn1 (Dsn1-AI) folds into two α-helices that engage the Mis12c head domain, occluding binding sites for inner kinetochore subunits CENP-C (Mif2) and CENP-U (Ame1), reducing their affinity for Mis12c. Aurora B (Ipl1) phosphorylation of Dsn1-AI releases this auto-inhibition, strengthening inner-outer kinetochore connections. C-terminal α-helical motifs of Dsn1, Mis12/Mtw1, and Nnf1 bind Knl1c and Ndc80c to mediate KMN assembly. Cryo-EM structure determination, biochemical binding assays, genetic experiments bioRxivpreprint High bio_10.1101_2025.06.03.657598
2024 In chicken DT40 cells lacking CENP-C–Mis12C interaction, CENP-T interacts with Mis12C through two distinct binding surfaces; this interaction is cooperatively regulated by dual phosphorylation of Dsn1 (a Mis12C component) and CENP-T, ensuring robust CENP-T–Mis12C interaction and proper mitotic progression. AlphaFold2-guided mutagenesis, cell viability assays in DT40 cells lacking CENP-C–Mis12C interaction, biochemical binding experiments bioRxivpreprint Medium bio_10.1101_2024.06.20.599825
2024 DSN1 directly interacts with Centromere Protein T (CENPT) in hepatocellular carcinoma cells, and elevated DSN1 expression leads to overproduction of cell cycle-related proteins through this interaction, contributing to chromosomal instability. siRNA/shRNA knockdown, overexpression vectors, co-immunoprecipitation implied by 'direct interaction', xenograft model Molecular carcinogenesis Low 39560395
2022 SRSF9 binds to DSN1 mRNA in an m6A-dependent manner (two m6A modification sites identified in the SRSF9-binding region) and stabilizes DSN1 mRNA; METTL3 knockdown impairs SRSF9-mediated stabilization of DSN1 mRNA, establishing METTL3 as the m6A writer enabling SRSF9 (reader) to stabilize DSN1 transcript. Methylated RNA affinity assays, gene-specific m6A qRT-PCR, RNA stability assays, METTL3 knockdown, dual-luciferase reporter assays Journal of translational medicine Medium 35509101
2021 ESRRA acts as a transcription factor that directly binds the DSN1 promoter and activates DSN1 transcription; ESRRA silencing causes G2/M arrest via the CDC25C–CDK1–Cyclin B1 pathway, which is downstream of DSN1. RNA-seq, dual-luciferase assay, ChIP assay, Western blotting, flow cytometry, ESRRA knockdown International journal of biological sciences Medium 34131395
2026 DSN1 competes with c-MYC for binding to FZR1 (an E3 ubiquitin ligase), thereby attenuating FZR1-mediated ubiquitination of c-MYC and preventing its proteasomal degradation; DSN1 knockdown accelerates c-MYC protein degradation through the ubiquitin-proteasome pathway without affecting c-MYC mRNA levels. Cycloheximide chase assay, proteasome inhibition assay, co-immunoprecipitation to identify FZR1-DSN1-c-MYC interaction, rescue experiments with c-MYC overexpression, in vivo metastasis assays Experimental cell research Medium 41713835

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2016 Over-expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression. Oncotarget 68 27329586
2021 ESRRA promotes gastric cancer development by regulating the CDC25C/CDK1/CyclinB1 pathway via DSN1. International journal of biological sciences 43 34131395
2022 SRSF9 promotes colorectal cancer progression via stabilizing DSN1 mRNA in an m6A-related manner. Journal of translational medicine 37 35509101
2013 The Mub1/Ubr2 ubiquitin ligase complex regulates the conserved Dsn1 kinetochore protein. PLoS genetics 26 23408894
2020 Identification of CDCA8, DSN1 and BIRC5 in Regulating Cell Cycle and Apoptosis in Osteosarcoma Using Bioinformatics and Cell Biology. Technology in cancer research & treatment 17 33153400
2009 Searching for Drosophila Dsn1 kinetochore protein. Cell cycle (Georgetown, Tex.) 14 19270503
2024 A conserved germline-specific Dsn1 alternative splice isoform supports oocyte and embryo development. Current biology : CB 10 39178843
2024 A conserved germline-specific Dsn1 alternative splice isoform supports oocyte and embryo development. bioRxiv : the preprint server for biology 1 38659852
2024 DSN1 Interaction With Centromere-Associated Proteins Promotes Chromosomal Instability in Hepatocellular Carcinoma. Molecular carcinogenesis 1 39560395
2026 DSN1 drives breast cancer progression via cell cycle regulation: diagnostic and therapeutic implications. Frontiers in oncology 0 41640445
2026 DSN1 promotes colorectal cancer metastasis by Inhibiting FZR1-Mediated ubiquitination of c-MYC. Experimental cell research 0 41713835

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